PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000281321	[[147560044, 147560580], [147561018, 147563626]]	[[147560292, 147560580], [147561018, 147561960]]
NM_004575	[[147560044, 147560580], [147561018, 147563623]]	[[147560292, 147560580], [147561018, 147561960]]

Promoter

Chrom	Start	End	Description
chr4	147560042	147560046	CAGE_peak_1_at_POU4F2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I146974	146974776	146975723	0.62	[{'connected_gene': 'TTC29', 'score': 21.86}, {'connected_gene': 'POU4F2', 'score': 9.87}, {'connected_gene': 'GC04M146965', 'score': 0.44}, {'connected_gene': 'ENSG00000248346', 'score': 0.37}, {'connected_gene': 'ENSG00000260090', 'score': 0.29}, {'connected_gene': 'LOC105377473', 'score': 0.26}]
chr4	GH04I146789	146789685	146790072	0.22	[{'connected_gene': 'TTC29', 'score': 7.34}, {'connected_gene': 'LOC105377474', 'score': 0.26}, {'connected_gene': 'POU4F2', 'score': 0.1}]
chr4	GH04I146636	146636516	146636768	0.66	[{'connected_gene': 'POU4F2', 'score': 0.77}, {'connected_gene': 'RNU1-44P', 'score': 0.22}]
chr4	GH04I146638	146638844	146638903	0.87	[{'connected_gene': 'POU4F2', 'score': 550.77}, {'connected_gene': 'RNU1-44P', 'score': 0.22}]
chr4	GH04I146880	146880679	146880936	0.4	[{'connected_gene': 'POU4F2', 'score': 9.66}, {'connected_gene': 'LOC105377474', 'score': 0.25}, {'connected_gene': 'ENSG00000248764', 'score': 0.23}, {'connected_gene': 'TTC29', 'score': 0.2}]
chr4	GH04I146653	146653174	146653402	0.51	[{'connected_gene': 'POU4F2', 'score': 0.39}, {'connected_gene': 'LOC105377474', 'score': 0.1}]
chr4	GH04I146586	146586000	146586201	0.49	[{'connected_gene': 'RNU1-44P', 'score': 0.44}, {'connected_gene': 'POU4F2', 'score': 0.23}]
chr4	GH04I146829	146829115	146829473	0.4	[{'connected_gene': 'LOC105377474', 'score': 0.77}, {'connected_gene': 'TTC29', 'score': 0.13}, {'connected_gene': 'POU4F2', 'score': 0.08}]
chr4	GH04I146787	146787910	146788128	0.4	[{'connected_gene': 'LOC105377474', 'score': 0.25}, {'connected_gene': 'POU4F2', 'score': 0.11}, {'connected_gene': 'TTC29', 'score': 0.1}]
chr4	GH04I146768	146768653	146769033	0.4	[{'connected_gene': 'LOC105377474', 'score': 0.21}, {'connected_gene': 'POU4F2', 'score': 0.13}, {'connected_gene': 'TTC29', 'score': 0.1}]
chr4	GH04I146788	146787685	146787894	0.4	[{'connected_gene': 'LOC105377474', 'score': 0.25}, {'connected_gene': 'POU4F2', 'score': 0.11}, {'connected_gene': 'TTC29', 'score': 0.1}]
chr4	GH04I146333	146333401	146334378	0.9	[{'connected_gene': 'ENSG00000251010', 'score': 11.14}, {'connected_gene': 'POU4F2', 'score': 10.08}, {'connected_gene': 'LOC105377472', 'score': 0.28}, {'connected_gene': 'GC04P146380', 'score': 0.26}, {'connected_gene': 'SLC10A7', 'score': 0.09}]
chr4	GH04I146328	146328220	146331183	0.91	[{'connected_gene': 'ENSG00000251010', 'score': 11.15}, {'connected_gene': 'POU4F2', 'score': 9.82}, {'connected_gene': 'LOC105377472', 'score': 0.29}, {'connected_gene': 'GC04P146380', 'score': 0.25}, {'connected_gene': 'SLC10A7', 'score': 0.08}]
chr4	GH04I146269	146269388	146269629	0.73	[{'connected_gene': 'ENSG00000251010', 'score': 10.92}, {'connected_gene': 'REELD1', 'score': 9.85}, {'connected_gene': 'POU4F2', 'score': 9.32}, {'connected_gene': 'ZNF827', 'score': 1.53}, {'connected_gene': 'LSM6', 'score': 1.49}, {'connected_gene': 'LOC105377472', 'score': 0.31}, {'connected_gene': 'SLC10A7', 'score': 0.07}]