PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000463284	[[22852250, 22852804], [22862295, 22862468]]	None
ENST00000358435	[[22852250, 22852804], [22857618, 22857667], [22862295, 22862470]]	[[22852788, 22852804], [22857618, 22857667], [22862295, 22862398]]
ENST00000483581	[[22852589, 22852804], [22857618, 22857954]]	None
ENST00000405021	[[22852589, 22852804], [22857618, 22857667], [22861772, 22861963]]	[[22852788, 22852804], [22857618, 22857667], [22861772, 22861863]]
ENST00000372879	[[22852591, 22852804], [22857030, 22857167], [22857618, 22857667], [22862295, 22862410]]	[[22852715, 22852804], [22857030, 22857167], [22857618, 22857667], [22862295, 22862398]]
ENST00000496129	[[22857281, 22857667], [22862295, 22862429]]	None
NM_019059	[[22852250, 22852804], [22857618, 22857667], [22862295, 22862471]]	[[22852788, 22852804], [22857618, 22857667], [22862295, 22862398]]

Promoter

Chrom	Start	End	Description
chr7	22862406	22862445	CAGE_peak_2_at_TOMM7_5end
chr7	22862448	22862475	CAGE_peak_1_at_TOMM7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I023062	23062572	23062949	0.88	[{'connected_gene': 'FAM126A', 'score': 10.86}, {'connected_gene': 'TOMM7', 'score': 10.71}, {'connected_gene': 'ENSG00000226329', 'score': 6.12}, {'connected_gene': 'LOC541472', 'score': 4.59}, {'connected_gene': 'GPNMB', 'score': 4.23}, {'connected_gene': 'LOC105375186', 'score': 0.28}, {'connected_gene': 'LOC105375185', 'score': 0.26}]
chr7	GH07I023017	23017001	23017800	0.6	[{'connected_gene': 'FAM126A', 'score': 14.37}, {'connected_gene': 'TOMM7', 'score': 5.3}, {'connected_gene': 'SNHG26', 'score': 4.63}, {'connected_gene': 'LOC105375185', 'score': 0.77}]
chr7	GH07I023067	23067302	23067491	0.31	[{'connected_gene': 'FAM126A', 'score': 16.17}, {'connected_gene': 'TOMM7', 'score': 10.71}, {'connected_gene': 'LOC105375186', 'score': 0.29}, {'connected_gene': 'LOC105375185', 'score': 0.25}]
chr7	GH07I022988	22988249	22991283	0.52	[{'connected_gene': 'FAM126A', 'score': 25.63}, {'connected_gene': 'TOMM7', 'score': 17.52}, {'connected_gene': 'ENSG00000226329', 'score': 6.37}, {'connected_gene': 'GPNMB', 'score': 5.22}, {'connected_gene': 'PIR51294', 'score': 0.18}]
chr7	GH07I022952	22952408	22952551	0.2	[{'connected_gene': 'FAM126A', 'score': 11.16}, {'connected_gene': 'TOMM7', 'score': 4.94}, {'connected_gene': 'PIR51294', 'score': 0.26}]
chr7	GH07I022943	22943642	22946127	0.38	[{'connected_gene': 'FAM126A', 'score': 23.26}, {'connected_gene': 'TOMM7', 'score': 7.98}, {'connected_gene': 'PIR51294', 'score': 0.28}]
chr7	GH07I023011	23011589	23014941	2	[{'connected_gene': 'FAM126A', 'score': 565.68}, {'connected_gene': 'CLK2P1', 'score': 21.68}, {'connected_gene': 'CCDC126', 'score': 15.67}, {'connected_gene': 'TOMM7', 'score': 6.78}, {'connected_gene': 'LOC541472', 'score': 6.75}, {'connected_gene': 'ENSG00000226329', 'score': 5.37}, {'connected_gene': 'PIR51294', 'score': 0.15}]
chr7	GH07I022852	22852408	22861336	2.24	[{'connected_gene': 'SNORD93', 'score': 550.77}, {'connected_gene': 'GC07P022859', 'score': 550.77}, {'connected_gene': 'TOMM7', 'score': 34.51}, {'connected_gene': 'SNHG26', 'score': 30.09}, {'connected_gene': 'FAM126A', 'score': 10.71}, {'connected_gene': 'LOC541472', 'score': 9.75}, {'connected_gene': 'IL6', 'score': 9.74}, {'connected_gene': 'ENSG00000226329', 'score': 7.95}, {'connected_gene': 'STEAP1B', 'score': 1.52}, {'connected_gene': 'GC07P022853', 'score': 0.77}]
chr7	GH07I022896	22896482	22897352	0.72	[{'connected_gene': 'TOMM7', 'score': 9.61}, {'connected_gene': 'PIR51294', 'score': 0.39}, {'connected_gene': 'GC07P022881', 'score': 0.37}, {'connected_gene': 'FAM126A', 'score': 0.13}]
chr7	GH07I022934	22934047	22935611	0.4	[{'connected_gene': 'TOMM7', 'score': 11.08}, {'connected_gene': 'FAM126A', 'score': 10.88}, {'connected_gene': 'PIR51294', 'score': 0.31}]
chr7	GH07I022786	22786204	22787131	0.87	[{'connected_gene': 'TOMM7', 'score': 18.79}, {'connected_gene': 'GC07M022788', 'score': 0.44}, {'connected_gene': 'RPS26P32', 'score': 0.39}]
chr7	GH07I022780	22780913	22782683	0.71	[{'connected_gene': 'TOMM7', 'score': 16.18}, {'connected_gene': 'CLK2P1', 'score': 11.66}, {'connected_gene': 'TRA2A', 'score': 10.68}, {'connected_gene': 'SNHG26', 'score': 10.37}, {'connected_gene': 'CCDC126', 'score': 9.87}, {'connected_gene': 'RPS26P32', 'score': 0.44}, {'connected_gene': 'GC07M022788', 'score': 0.39}]
chr7	GH07I022782	22782722	22782891	0.67	[{'connected_gene': 'TOMM7', 'score': 15.44}, {'connected_gene': 'CLK2P1', 'score': 11.66}, {'connected_gene': 'TRA2A', 'score': 10.68}, {'connected_gene': 'SNHG26', 'score': 10.37}, {'connected_gene': 'CCDC126', 'score': 9.87}, {'connected_gene': 'RPS26P32', 'score': 0.44}, {'connected_gene': 'GC07M022788', 'score': 0.39}]
chr7	GH07I022841	22841502	22844322	0.69	[{'connected_gene': 'TOMM7', 'score': 19.87}, {'connected_gene': 'SNHG26', 'score': 15.49}, {'connected_gene': 'FAM126A', 'score': 4.63}, {'connected_gene': 'GC07P022837', 'score': 0.44}, {'connected_gene': 'GC07P022853', 'score': 0.39}]
chr7	GH07I022809	22809424	22812898	0.49	[{'connected_gene': 'TOMM7', 'score': 59.24}, {'connected_gene': 'SNHG26', 'score': 15.92}, {'connected_gene': 'FAM126A', 'score': 4.24}, {'connected_gene': 'PIR54491', 'score': 0.39}]
chr7	GH07I022819	22819721	22823838	2.04	[{'connected_gene': 'TOMM7', 'score': 610.34}, {'connected_gene': 'GC07P022823', 'score': 550.77}, {'connected_gene': 'SNHG26', 'score': 15.92}, {'connected_gene': 'EEF1A1P6', 'score': 11.71}, {'connected_gene': 'TRA2A', 'score': 9.8}, {'connected_gene': 'FAM126A', 'score': 4.79}, {'connected_gene': 'PIR54491', 'score': 0.34}]
chr7	GH07I022808	22808262	22808431	0.2	[{'connected_gene': 'TOMM7', 'score': 6.6}, {'connected_gene': 'SNHG26', 'score': 6.26}, {'connected_gene': 'PIR54491', 'score': 0.44}]
chr7	GH07I022801	22801862	22803408	0.46	[{'connected_gene': 'TOMM7', 'score': 10.69}, {'connected_gene': 'SNHG26', 'score': 5.07}, {'connected_gene': 'PIR54491', 'score': 0.77}]
chr7	GH07I022862	22862528	22868391	1.03	[{'connected_gene': 'SNHG26', 'score': 27.71}, {'connected_gene': 'TOMM7', 'score': 16.36}, {'connected_gene': 'FAM126A', 'score': 10.72}, {'connected_gene': 'ENSG00000226329', 'score': 7.08}, {'connected_gene': 'SNORD93', 'score': 0.44}]
chr7	GH07I022807	22807318	22808107	0.2	[{'connected_gene': 'SNHG26', 'score': 13.09}, {'connected_gene': 'TOMM7', 'score': 6.26}, {'connected_gene': 'PIR54491', 'score': 0.44}]
chr7	GH07I023019	23019757	23025285	1.24	[{'connected_gene': 'LOC105375185', 'score': 550.77}, {'connected_gene': 'TOMM7', 'score': 6.84}, {'connected_gene': 'LOC541472', 'score': 6.74}, {'connected_gene': 'FAM126A', 'score': 5.05}, {'connected_gene': 'IL6', 'score': 3.81}, {'connected_gene': 'LOC105375186', 'score': 0.18}]