PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000392129	[[165696031, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165738139]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165737988]]
ENST00000367881	[[165696031, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165738417]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165738141]]
ENST00000580248	[[165696542, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165766933, 165767050], [165769154, 165769272], [165796706, 165796992]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723467]]
ENST00000464650	[[165696774, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737995, 165738113]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723467]]
ENST00000476143	[[165697322, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165737428, 165737506], [165737918, 165738125]]	[[165723509, 165723511], [165737428, 165737506], [165737918, 165738125]]
ENST00000481278	[[165712405, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737718, 165738074]]	[[165712405, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737718, 165737752]]
ENST00000465705	[[165712415, 165712548], [165721338, 165721406], [165723464, 165723511], [165724090, 165724227], [165728761, 165728821], [165737428, 165737506], [165737918, 165738155]]	[[165724129, 165724227], [165728761, 165728821], [165737428, 165737506], [165737918, 165738141]]
NM_001256165	[[165693527, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737718, 165738159]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737718, 165737752]]
NM_019026	[[165693527, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165738159]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737918, 165738141]]
NR_045818	[[165693527, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737506], [165737995, 165738159]]	None
NM_001256164	[[165693527, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737481], [165737995, 165738159]]	[[165697259, 165697358], [165712403, 165712548], [165721338, 165721406], [165723464, 165723511], [165728761, 165728821], [165737428, 165737481], [165737995, 165738141]]

Promoter

Chrom	Start	End	Description
chr1	165738056	165738067	CAGE_peak_2_at_TMCO1_5end
chr1	165738072	165738083	CAGE_peak_3_at_TMCO1_5end
chr1	165738085	165738139	CAGE_peak_1_at_TMCO1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I165826	165826913	165830228	2.56	[{'connected_gene': 'UCK2', 'score': 555.55}, {'connected_gene': 'TMCO1', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 37.31}, {'connected_gene': 'ENSG00000236364', 'score': 11.27}]
chr1	GH01I165902	165902843	165904807	0.58	[{'connected_gene': 'UCK2', 'score': 17.51}, {'connected_gene': 'ENSG00000236364', 'score': 12.62}, {'connected_gene': 'TMCO1', 'score': 10.79}, {'connected_gene': 'LOC100147773', 'score': 10.72}, {'connected_gene': 'LOC105371586', 'score': 8.16}, {'connected_gene': 'MIR3658', 'score': 0.77}]
chr1	GH01I165894	165894234	165901752	1.47	[{'connected_gene': 'UCK2', 'score': 18.91}, {'connected_gene': 'ENSG00000236364', 'score': 12.92}, {'connected_gene': 'TMCO1', 'score': 10.8}, {'connected_gene': 'LOC100147773', 'score': 10.73}, {'connected_gene': 'LOC105371586', 'score': 8.23}]
chr1	GH01I165874	165874741	165876896	0.86	[{'connected_gene': 'UCK2', 'score': 11.92}, {'connected_gene': 'TMCO1', 'score': 10.81}, {'connected_gene': 'LOC100147773', 'score': 10.71}, {'connected_gene': 'LOC105371586', 'score': 5.35}, {'connected_gene': 'ENSG00000236364', 'score': 0.34}]
chr1	GH01I165884	165883520	165885837	1.12	[{'connected_gene': 'UCK2', 'score': 13.38}, {'connected_gene': 'TMCO1', 'score': 11.5}, {'connected_gene': 'LOC100147773', 'score': 11.4}, {'connected_gene': 'LOC105371586', 'score': 5.39}, {'connected_gene': 'ENSG00000236364', 'score': 0.37}]
chr1	GH01I165869	165868809	165869333	0.2	[{'connected_gene': 'UCK2', 'score': 12.46}, {'connected_gene': 'TMCO1', 'score': 12.1}, {'connected_gene': 'LOC100147773', 'score': 11.98}, {'connected_gene': 'ENSG00000236364', 'score': 11.3}]
chr1	GH01I165870	165870551	165872173	1.35	[{'connected_gene': 'UCK2', 'score': 22.58}, {'connected_gene': 'TMCO1', 'score': 11.46}, {'connected_gene': 'LOC100147773', 'score': 11.35}, {'connected_gene': 'ENSG00000236364', 'score': 11.31}]
chr1	GH01I165863	165862044	165862193	0.69	[{'connected_gene': 'UCK2', 'score': 0.29}, {'connected_gene': 'TMCO1', 'score': 0.29}, {'connected_gene': 'ENSG00000236364', 'score': 0.28}]
chr1	GH01I165850	165850959	165851632	1.1	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.25}]
chr1	GH01I165862	165862401	165862800	0.58	[{'connected_gene': 'UCK2', 'score': 11.12}, {'connected_gene': 'TMCO1', 'score': 0.29}, {'connected_gene': 'ENSG00000236364', 'score': 0.28}]
chr1	GH01I165830	165830603	165831795	0.57	[{'connected_gene': 'UCK2', 'score': 0.77}, {'connected_gene': 'TMCO1', 'score': 0.77}, {'connected_gene': 'ENSG00000236364', 'score': 0.2}]
chr1	GH01I165840	165840401	165840600	0.63	[{'connected_gene': 'UCK2', 'score': 0.39}, {'connected_gene': 'TMCO1', 'score': 0.39}, {'connected_gene': 'ENSG00000236364', 'score': 0.21}]
chr1	GH01I165833	165833001	165833400	0.85	[{'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}, {'connected_gene': 'ENSG00000236364', 'score': 0.2}]
chr1	GH01I165849	165849601	165850000	0.58	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165846	165846484	165846633	0.93	[{'connected_gene': 'UCK2', 'score': 0.37}, {'connected_gene': 'TMCO1', 'score': 0.37}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165847	165847765	165848374	0.49	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165888	165888988	165889761	0.2	[{'connected_gene': 'UCK2', 'score': 12.82}, {'connected_gene': 'LOC105371586', 'score': 5.61}, {'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165890	165890438	165893252	0.63	[{'connected_gene': 'UCK2', 'score': 14.04}, {'connected_gene': 'LOC105371586', 'score': 7.03}, {'connected_gene': 'ENSG00000236364', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165879	165879513	165882728	0.52	[{'connected_gene': 'UCK2', 'score': 12.18}, {'connected_gene': 'LOC105371586', 'score': 6.1}, {'connected_gene': 'ENSG00000236364', 'score': 0.37}, {'connected_gene': 'TMCO1', 'score': 0.23}]
chr1	GH01I165864	165864870	165867482	0.49	[{'connected_gene': 'TMCO1', 'score': 11.06}, {'connected_gene': 'UCK2', 'score': 11.0}, {'connected_gene': 'LOC100147773', 'score': 10.94}, {'connected_gene': 'LOC105371586', 'score': 5.65}, {'connected_gene': 'ENSG00000236364', 'score': 0.29}]
chr1	GH01I165841	165841377	165843773	1.35	[{'connected_gene': 'TMCO1', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.37}, {'connected_gene': 'ENSG00000236364', 'score': 0.22}]
chr1	GH01I165852	165852757	165860412	1.68	[{'connected_gene': 'LOC284685', 'score': 44.02}, {'connected_gene': 'UCK2', 'score': 24.96}, {'connected_gene': 'ENSG00000236364', 'score': 17.4}, {'connected_gene': 'RPS13P1', 'score': 12.12}, {'connected_gene': 'TMCO1', 'score': 11.31}, {'connected_gene': 'LOC100147773', 'score': 11.16}, {'connected_gene': 'LOC105371586', 'score': 4.66}]
chr1	GH01I165767	165767640	165770435	2.09	[{'connected_gene': 'LOC100147773', 'score': 562.79}, {'connected_gene': 'TMCO1', 'score': 550.22}, {'connected_gene': 'LOC284685', 'score': 21.35}, {'connected_gene': 'ALDH9A1', 'score': 18.17}, {'connected_gene': 'GC01P165777', 'score': 0.44}]
chr1	GH01I165772	165772287	165774081	1.05	[{'connected_gene': 'LOC100147773', 'score': 5.84}, {'connected_gene': 'TMCO1', 'score': 5.6}, {'connected_gene': 'GC01P165777', 'score': 0.77}]
chr1	GH01I165747	165747644	165747813	0.65	[{'connected_gene': 'LOC100147773', 'score': 0.34}, {'connected_gene': 'LOC105371581', 'score': 0.28}, {'connected_gene': 'TMCO1', 'score': 0.18}]
chr1	GH01I165748	165748164	165748313	0.52	[{'connected_gene': 'LOC100147773', 'score': 0.34}, {'connected_gene': 'LOC105371581', 'score': 0.28}, {'connected_gene': 'TMCO1', 'score': 0.18}]
chr1	GH01I165877	165877564	165878826	0.98	[{'connected_gene': 'ENSG00000236364', 'score': 12.15}, {'connected_gene': 'UCK2', 'score': 12.06}, {'connected_gene': 'TMCO1', 'score': 10.92}, {'connected_gene': 'LOC100147773', 'score': 10.83}, {'connected_gene': 'LOC105371586', 'score': 5.5}]
chr1	GH01I165883	165883184	165883401	0.78	[{'connected_gene': 'ENSG00000236364', 'score': 0.37}, {'connected_gene': 'UCK2', 'score': 0.22}, {'connected_gene': 'TMCO1', 'score': 0.22}]
chr1	GH01I165837	165837029	165837757	0.85	[{'connected_gene': 'ENSG00000236364', 'score': 11.08}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]
chr1	GH01I165889	165888144	165888766	0.54	[{'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.21}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165868	165868298	165868806	0.2	[{'connected_gene': 'ENSG00000236364', 'score': 0.29}, {'connected_gene': 'UCK2', 'score': 0.26}, {'connected_gene': 'TMCO1', 'score': 0.26}]
chr1	GH01I165836	165836601	165836800	1.02	[{'connected_gene': 'ENSG00000236364', 'score': 11.08}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]
chr1	GH01I165886	165886201	165886685	0.78	[{'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.22}, {'connected_gene': 'TMCO1', 'score': 0.22}]
chr1	GH01I165834	165834211	165835498	0.46	[{'connected_gene': 'ENSG00000236364', 'score': 10.71}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]