PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr15	80351933	80351947	CAGE_peak_5_at_ZFAND6_5end
chr15	80351980	80352061	CAGE_peak_1_at_ZFAND6_5end
chr15	80352070	80352097	CAGE_peak_2_at_ZFAND6_5end
chr15	80352249	80352286	CAGE_peak_4_at_ZFAND6_5end
chr15	80352456	80352465	CAGE_peak_10_at_ZFAND6_5end
chr15	80364901	80364920	CAGE_peak_3_at_ZFAND6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I080141	80141060	80141064	0.57	[{'connected_gene': 'BCL2A1', 'score': 7.61}, {'connected_gene': 'ZFAND6', 'score': 2.83}, {'connected_gene': 'GC15M080141', 'score': 0.77}, {'connected_gene': 'FAH', 'score': 0.39}]
chr15	GH15I079976	79976848	79982803	1.7	[{'connected_gene': 'BCL2A1', 'score': 20.58}, {'connected_gene': 'ST20', 'score': 7.43}, {'connected_gene': 'ZFAND6', 'score': 4.05}, {'connected_gene': 'LOC100420205', 'score': 0.77}]
chr15	GH15I079947	79947779	79948950	1.23	[{'connected_gene': 'BCL2A1', 'score': 22.91}, {'connected_gene': 'ST20', 'score': 11.52}, {'connected_gene': 'MTHFS', 'score': 5.82}, {'connected_gene': 'ZFAND6', 'score': 3.32}, {'connected_gene': 'GC15P079945', 'score': 0.77}]
chr15	GH15I080064	80064645	80064984	0.38	[{'connected_gene': 'BCL2A1', 'score': 10.69}, {'connected_gene': 'FAH', 'score': 6.66}, {'connected_gene': 'ZFAND6', 'score': 0.44}, {'connected_gene': 'GC15M080141', 'score': 0.19}]
chr15	GH15I079902	79902055	79902202	0.88	[{'connected_gene': 'BCL2A1', 'score': 21.73}, {'connected_gene': 'RNU6-667P', 'score': 9.83}, {'connected_gene': 'ZFAND6', 'score': 3.77}, {'connected_gene': 'ST20-MTHFS', 'score': 2.15}, {'connected_gene': 'ST20', 'score': 1.55}, {'connected_gene': 'MTHFS', 'score': 0.77}, {'connected_gene': 'GC15M079918', 'score': 0.37}]
chr15	GH15I079961	79961601	79962874	1.32	[{'connected_gene': 'BCL2A1', 'score': 25.0}, {'connected_gene': 'RNU6-667P', 'score': 9.8}, {'connected_gene': 'ZFAND6', 'score': 6.72}, {'connected_gene': 'ST20-MTHFS', 'score': 4.72}, {'connected_gene': 'MTHFS', 'score': 3.34}, {'connected_gene': 'ST20', 'score': 2.78}, {'connected_gene': 'GC15P079945', 'score': 0.37}]
chr15	GH15I079953	79953811	79956787	1.46	[{'connected_gene': 'BCL2A1', 'score': 12.19}, {'connected_gene': 'RNU6-667P', 'score': 9.54}, {'connected_gene': 'ST20', 'score': 6.34}, {'connected_gene': 'ZFAND6', 'score': 4.86}, {'connected_gene': 'GC15P079945', 'score': 0.39}]
chr15	GH15I079900	79900147	79900408	0.77	[{'connected_gene': 'BCL2A1', 'score': 45.91}, {'connected_gene': 'RNU6-667P', 'score': 9.83}, {'connected_gene': 'ST20-MTHFS', 'score': 6.16}, {'connected_gene': 'ZFAND6', 'score': 6.14}, {'connected_gene': 'MTHFS', 'score': 5.81}, {'connected_gene': 'ST20', 'score': 4.37}, {'connected_gene': 'GC15M079918', 'score': 0.34}]
chr15	GH15I079964	79964588	79972057	2.44	[{'connected_gene': 'BCL2A1', 'score': 581.6}, {'connected_gene': 'MTHFS', 'score': 14.06}, {'connected_gene': 'ST20-MTHFS', 'score': 13.86}, {'connected_gene': 'ST20', 'score': 9.84}, {'connected_gene': 'RNU6-667P', 'score': 9.8}, {'connected_gene': 'LOC101929560', 'score': 6.53}, {'connected_gene': 'ZFAND6', 'score': 5.85}, {'connected_gene': 'GC15P079945', 'score': 0.34}]
chr15	GH15I079973	79973401	79974206	1.24	[{'connected_gene': 'BCL2A1', 'score': 25.86}, {'connected_gene': 'ST20-MTHFS', 'score': 10.78}, {'connected_gene': 'MTHFS', 'score': 7.53}, {'connected_gene': 'ST20', 'score': 7.27}, {'connected_gene': 'ZFAND6', 'score': 4.48}, {'connected_gene': 'LOC100420205', 'score': 0.39}]
chr15	GH15I080491	80491186	80491515	0.62	[{'connected_gene': 'CEMIP', 'score': 10.75}, {'connected_gene': 'ARNT2', 'score': 10.16}, {'connected_gene': 'ZFAND6', 'score': 5.25}, {'connected_gene': 'GC15M080508', 'score': 0.37}, {'connected_gene': 'GC15P080469', 'score': 0.34}]
chr15	GH15I080473	80473201	80475382	1.02	[{'connected_gene': 'CEMIP', 'score': 11.34}, {'connected_gene': 'ARNT2', 'score': 10.36}, {'connected_gene': 'ZFAND6', 'score': 2.75}, {'connected_gene': 'GC15P080469', 'score': 0.77}, {'connected_gene': 'GC15M080508', 'score': 0.29}]
chr15	GH15I080031	80031470	80035287	1.13	[{'connected_gene': 'ZFAND6', 'score': 11.92}, {'connected_gene': 'BCL2A1', 'score': 10.88}, {'connected_gene': 'ST20', 'score': 7.35}, {'connected_gene': 'MTHFS', 'score': 6.43}, {'connected_gene': 'RASGRF1', 'score': 5.0}, {'connected_gene': 'ENSG00000279705', 'score': 0.37}, {'connected_gene': 'ENSG00000275460', 'score': 0.34}]
chr15	GH15I080058	80058532	80063520	2.03	[{'connected_gene': 'ZFAND6', 'score': 561.16}, {'connected_gene': 'BCL2A1', 'score': 10.7}, {'connected_gene': 'FAH', 'score': 9.76}, {'connected_gene': 'TLNRD1', 'score': 5.5}, {'connected_gene': 'GC15M080141', 'score': 0.18}]
chr15	GH15I080070	80070786	80073476	2.1	[{'connected_gene': 'ZFAND6', 'score': 560.78}, {'connected_gene': 'BCL2A1', 'score': 10.76}, {'connected_gene': 'FAH', 'score': 9.37}, {'connected_gene': 'GC15M080141', 'score': 0.2}]
chr15	GH15I080017	80017070	80019591	0.81	[{'connected_gene': 'ZFAND6', 'score': 11.64}, {'connected_gene': 'BCL2A1', 'score': 11.28}, {'connected_gene': 'RNU6-667P', 'score': 9.6}, {'connected_gene': 'ST20', 'score': 7.3}, {'connected_gene': 'ENSG00000279705', 'score': 0.77}, {'connected_gene': 'ENSG00000275460', 'score': 0.28}]
chr15	GH15I080008	80008763	80012675	0.98	[{'connected_gene': 'ZFAND6', 'score': 13.72}, {'connected_gene': 'BCL2A1', 'score': 13.42}, {'connected_gene': 'RNU6-667P', 'score': 10.23}, {'connected_gene': 'MTHFS', 'score': 7.0}, {'connected_gene': 'ST20', 'score': 6.95}, {'connected_gene': 'ENSG00000279705', 'score': 0.77}, {'connected_gene': 'ENSG00000279719', 'score': 0.34}]
chr15	GH15I080026	80026399	80026548	0.2	[{'connected_gene': 'ZFAND6', 'score': 11.1}, {'connected_gene': 'BCL2A1', 'score': 10.95}, {'connected_gene': 'ENSG00000279705', 'score': 0.39}, {'connected_gene': 'ENSG00000275460', 'score': 0.29}]
chr15	GH15I080075	80075031	80075090	0.73	[{'connected_gene': 'ZFAND6', 'score': 550.37}, {'connected_gene': 'BCL2A1', 'score': 10.11}, {'connected_gene': 'GC15M080141', 'score': 0.21}]
chr15	GH15I080178	80178659	80181027	1.02	[{'connected_gene': 'ZFAND6', 'score': 10.53}, {'connected_gene': 'FAH', 'score': 8.11}, {'connected_gene': 'CTXND1', 'score': 5.6}, {'connected_gene': 'GC15P080189', 'score': 0.44}, {'connected_gene': 'ENSG00000259967', 'score': 0.39}]
chr15	GH15I079993	79993366	79994000	0.98	[{'connected_gene': 'ZFAND6', 'score': 11.06}, {'connected_gene': 'RNU6-667P', 'score': 9.79}, {'connected_gene': 'ST20', 'score': 4.82}, {'connected_gene': 'ENSG00000279719', 'score': 0.77}, {'connected_gene': 'ENSG00000279705', 'score': 0.34}]
chr15	GH15I080173	80173419	80173588	1.04	[{'connected_gene': 'ZFAND6', 'score': 11.73}, {'connected_gene': 'RNU6-667P', 'score': 10.23}, {'connected_gene': 'FAH', 'score': 8.39}, {'connected_gene': 'ENSG00000259967', 'score': 0.44}, {'connected_gene': 'GC15P080189', 'score': 0.37}]
chr15	GH15I080536	80536237	80536442	0.42	[{'connected_gene': 'ZFAND6', 'score': 4.25}, {'connected_gene': 'GC15M080508', 'score': 0.31}, {'connected_gene': 'LOC101929586', 'score': 0.31}, {'connected_gene': 'ARNT2', 'score': 0.12}]
chr15	GH15I079994	79994779	79994928	0.49	[{'connected_gene': 'ZFAND6', 'score': 10.85}, {'connected_gene': 'ENSG00000279719', 'score': 0.77}, {'connected_gene': 'ENSG00000279705', 'score': 0.37}]
chr15	GH15I080035	80035319	80035468	0.38	[{'connected_gene': 'ZFAND6', 'score': 11.94}, {'connected_gene': 'ENSG00000279705', 'score': 0.34}, {'connected_gene': 'ENSG00000275460', 'score': 0.34}]
chr15	GH15I080081	80081157	80081945	0.54	[{'connected_gene': 'ZFAND6', 'score': 12.63}, {'connected_gene': 'GC15M080141', 'score': 0.22}]
chr15	GH15I080094	80094160	80094500	0.92	[{'connected_gene': 'ZFAND6', 'score': 0.29}, {'connected_gene': 'GC15M080141', 'score': 0.26}]
chr15	GH15I080093	80093899	80094148	0.92	[{'connected_gene': 'ZFAND6', 'score': 0.29}, {'connected_gene': 'GC15M080141', 'score': 0.26}]
chr15	GH15I080159	80159597	80163275	1.67	[{'connected_gene': 'FAH', 'score': 9.87}, {'connected_gene': 'BCL2A1', 'score': 3.7}, {'connected_gene': 'ZFAND6', 'score': 2.92}, {'connected_gene': 'ENSG00000259967', 'score': 0.77}]
chr15	GH15I080174	80173632	80175239	1.23	[{'connected_gene': 'FAH', 'score': 15.34}, {'connected_gene': 'ZFAND6', 'score': 11.73}, {'connected_gene': 'RNU6-667P', 'score': 10.23}, {'connected_gene': 'ENSG00000259967', 'score': 0.44}, {'connected_gene': 'GC15P080189', 'score': 0.39}]
chr15	GH15I080105	80105033	80106783	0.63	[{'connected_gene': 'FAH', 'score': 9.73}, {'connected_gene': 'GC15M080141', 'score': 0.29}, {'connected_gene': 'ZFAND6', 'score': 0.25}]
chr15	GH15I080151	80151605	80156685	2.27	[{'connected_gene': 'FAH', 'score': 561.86}, {'connected_gene': 'ENSG00000259649', 'score': 24.42}, {'connected_gene': 'ZFAND6', 'score': 10.61}, {'connected_gene': 'ENSG00000259967', 'score': 0.39}]
chr15	GH15I079952	79952406	79953799	0.78	[{'connected_gene': 'RNU6-667P', 'score': 9.54}, {'connected_gene': 'BCL2A1', 'score': 8.53}, {'connected_gene': 'ST20', 'score': 6.35}, {'connected_gene': 'ZFAND6', 'score': 3.53}, {'connected_gene': 'ST20-MTHFS', 'score': 1.47}, {'connected_gene': 'GC15P079945', 'score': 0.44}]
chr15	GH15I079894	79894481	79899998	2.28	[{'connected_gene': 'MTHFS', 'score': 587.4}, {'connected_gene': 'ST20', 'score': 31.93}, {'connected_gene': 'BCL2A1', 'score': 12.02}, {'connected_gene': 'ZFAND6', 'score': 10.73}, {'connected_gene': 'RNU6-667P', 'score': 10.08}, {'connected_gene': 'KIAA1024', 'score': 4.42}, {'connected_gene': 'ENSG00000279394', 'score': 0.37}, {'connected_gene': 'ST20-MTHFS', 'score': 0.31}]
chr15	GH15I079872	79872301	79873394	0.76	[{'connected_gene': 'MTHFS', 'score': 21.29}, {'connected_gene': 'ST20', 'score': 18.13}, {'connected_gene': 'BCL2A1', 'score': 15.78}, {'connected_gene': 'ZFAND6', 'score': 3.7}, {'connected_gene': 'ST20-MTHFS', 'score': 3.49}, {'connected_gene': 'GC15M079834', 'score': 0.44}, {'connected_gene': 'ENSG00000279394', 'score': 0.44}]
chr15	GH15I079883	79883085	79888497	0.87	[{'connected_gene': 'MTHFS', 'score': 37.44}, {'connected_gene': 'ST20', 'score': 18.1}, {'connected_gene': 'BCL2A1', 'score': 11.75}, {'connected_gene': 'RNU6-667P', 'score': 10.37}, {'connected_gene': 'ZFAND6', 'score': 10.23}, {'connected_gene': 'KIAA1024', 'score': 4.42}, {'connected_gene': 'ENSG00000279394', 'score': 0.44}, {'connected_gene': 'ST20-MTHFS', 'score': 0.28}]
chr15	GH15I079987	79987019	79991000	1.34	[{'connected_gene': 'ENSG00000279719', 'score': 550.77}, {'connected_gene': 'BCL2A1', 'score': 14.18}, {'connected_gene': 'RNU6-667P', 'score': 9.79}, {'connected_gene': 'ST20', 'score': 5.79}, {'connected_gene': 'TMED3', 'score': 4.45}, {'connected_gene': 'ZFAND6', 'score': 3.38}, {'connected_gene': 'LOC100420205', 'score': 0.77}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000261749	[[80351909, 80352151], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000561060	[[80351954, 80352151], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430020]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000559157	[[80351976, 80352151], [80407368, 80407412], [80412669, 80412840], [80414089, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430702]]	[[80412686, 80412840], [80414089, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000561012	[[80352017, 80352151], [80390757, 80390920], [80403769, 80403901], [80405117, 80405196], [80412669, 80412746]]	[[80403841, 80403901], [80405117, 80405196], [80412669, 80412746]]
ENST00000564367	[[80352031, 80352151], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80429821, 80429902]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80429821, 80429902]]
ENST00000558494	[[80352055, 80352151], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430702]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000560470	[[80352765, 80353082], [80390757, 80390920], [80412669, 80412747]]	[[80412686, 80412747]]
ENST00000560228	[[80364905, 80364989], [80390757, 80390920], [80403769, 80403901], [80412669, 80412782]]	[[80412686, 80412782]]
ENST00000559835	[[80364919, 80364989], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430702]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000559775	[[80364924, 80364989], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430700]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000558688	[[80364928, 80364989], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423859]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423691]]
ENST00000560392	[[80364929, 80364989], [80365607, 80365672], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162]]	[[80412686, 80412840], [80414053, 80414162]]
ENST00000560976	[[80364929, 80364989], [80365607, 80365672], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423575]]	[[80365641, 80365672], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423575]]
ENST00000558272	[[80364931, 80364989], [80367505, 80367657], [80390757, 80390920], [80412669, 80412840], [80414053, 80414092]]	[[80412686, 80412840], [80414053, 80414092]]
ENST00000558390	[[80364931, 80364989], [80365607, 80365672], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423583]]	[[80365641, 80365672], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423583]]
ENST00000557793	[[80364932, 80364989], [80412669, 80413144]]	None
ENST00000558997	[[80367502, 80367584], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423636]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423636]]
ENST00000558087	[[80367502, 80367584], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430153]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
ENST00000558724	[[80367532, 80367657], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423636]]	[[80367629, 80367657], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423636]]
ENST00000561017	[[80414060, 80414162], [80415041, 80415409]]	None
ENST00000557983	[[80421941, 80423635], [80429821, 80430721]]	None
NM_001242918	[[80351909, 80352151], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80429821, 80429970]]
NM_001242911	[[80351909, 80352151], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242917	[[80351909, 80352151], [80407368, 80407412], [80412669, 80412840], [80414089, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414089, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_019006	[[80351909, 80352151], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242912	[[80351909, 80352151], [80367505, 80367584], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242913	[[80352271, 80352305], [80367505, 80367584], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242914	[[80352501, 80352589], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242915	[[80364902, 80364989], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242916	[[80364902, 80364989], [80390757, 80390920], [80412669, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414162], [80415041, 80415142], [80423521, 80423635], [80429821, 80429970]]
NM_001242919	[[80390757, 80390920], [80412669, 80412840], [80414053, 80414141], [80415101, 80415142], [80423521, 80423635], [80429821, 80430735]]	[[80412686, 80412840], [80414053, 80414141], [80415101, 80415142], [80423521, 80423635], [80429821, 80429970]]