PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000487794	[[139834886, 139835623], [139835702, 139835915], [139835988, 139836136], [139836206, 139836918], [139836998, 139837120]]	None
ENST00000325285	[[139834886, 139835623], [139835702, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837147], [139837220, 139837395], [139837800, 139837958], [139838342, 139838558], [139839045, 139839102]]	[[139835379, 139835623], [139835702, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837147], [139837220, 139837395], [139837800, 139837958], [139838342, 139838535]]
ENST00000483559	[[139834886, 139835623], [139835702, 139835915], [139835988, 139836136], [139836497, 139837147], [139837220, 139837395], [139837800, 139837958], [139838342, 139838558], [139839045, 139839140]]	None
ENST00000459905	[[139834886, 139835623], [139835702, 139835915], [139835988, 139836136], [139836551, 139836918], [139836998, 139837395], [139837800, 139837958], [139838342, 139838558], [139839045, 139839148]]	None
ENST00000433269	[[139835862, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837178]]	[[139835862, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837178]]
ENST00000480818	[[139836998, 139837395], [139837800, 139837958], [139838342, 139838607]]	None
ENST00000491246	[[139836998, 139837147], [139837220, 139837455], [139837800, 139837958], [139838342, 139838558], [139839045, 139839072]]	None
ENST00000428398	[[139837102, 139837147], [139837220, 139837425], [139837800, 139837958], [139838342, 139838558], [139839045, 139839139]]	[[139837102, 139837147], [139837220, 139837425], [139837800, 139837958], [139838342, 139838535]]
ENST00000443788	[[139837358, 139837395], [139837800, 139837958], [139838342, 139838986]]	[[139837358, 139837395], [139837800, 139837958], [139838342, 139838535]]
NM_018998	[[139834884, 139835623], [139835702, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837147], [139837220, 139837395], [139837800, 139837958], [139838342, 139838558], [139839045, 139839206]]	[[139835379, 139835623], [139835702, 139835915], [139835988, 139836136], [139836497, 139836918], [139836998, 139837147], [139837220, 139837395], [139837800, 139837958], [139838342, 139838535]]

Promoter

Chrom	Start	End	Description
chr9	139836518	139836532	CAGE_peak_12_at_FBXW5_5end
chr9	139838624	139838660	CAGE_peak_11_at_FBXW5_5end
chr9	139838806	139838818	CAGE_peak_18_at_FBXW5_5end
chr9	139839002	139839020	CAGE_peak_3_at_FBXW5_5end
chr9	139839064	139839147	CAGE_peak_1_at_FBXW5_5end
chr9	139839148	139839166	CAGE_peak_4_at_FBXW5_5end
chr9	139839178	139839204	CAGE_peak_2_at_FBXW5_5end
chr9	139839209	139839219	CAGE_peak_6_at_FBXW5_5end
chr9	139839233	139839240	CAGE_peak_8_at_FBXW5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I136822	136821400	136821601	0.81	[{'connected_gene': 'DPH7', 'score': 16.98}, {'connected_gene': 'INPP5E', 'score': 16.39}, {'connected_gene': 'ARRDC1-AS1', 'score': 13.81}, {'connected_gene': 'EXD3', 'score': 13.2}, {'connected_gene': 'CCDC183', 'score': 12.55}, {'connected_gene': 'AJM1', 'score': 12.27}, {'connected_gene': 'MAMDC4', 'score': 12.24}, {'connected_gene': 'PHPT1', 'score': 12.24}, {'connected_gene': 'SNAPC4', 'score': 11.88}, {'connected_gene': 'LCN12', 'score': 11.68}, {'connected_gene': 'FBXW5', 'score': 11.59}, {'connected_gene': 'C8G', 'score': 11.59}, {'connected_gene': 'ANAPC2', 'score': 11.32}, {'connected_gene': 'QSOX2', 'score': 10.99}, {'connected_gene': 'CCDC183-AS1', 'score': 10.16}, {'connected_gene': 'MAN1B1', 'score': 9.93}, {'connected_gene': 'MIR4292', 'score': 0.44}, {'connected_gene': 'NCLP1', 'score': 0.44}, {'connected_gene': 'RABL6', 'score': 0.39}, {'connected_gene': 'ENSG00000272679', 'score': 0.34}]
chr9	GH09I136787	136787601	136801825	2.51	[{'connected_gene': 'TMEM141', 'score': 561.35}, {'connected_gene': 'CCDC183', 'score': 550.77}, {'connected_gene': 'DPH7', 'score': 30.0}, {'connected_gene': 'LCN8', 'score': 18.18}, {'connected_gene': 'ANAPC2', 'score': 15.3}, {'connected_gene': 'ABCA2', 'score': 14.83}, {'connected_gene': 'SNHG7', 'score': 12.17}, {'connected_gene': 'LCN10', 'score': 11.88}, {'connected_gene': 'EXD3', 'score': 11.43}, {'connected_gene': 'LCN12', 'score': 11.33}, {'connected_gene': 'PRR31', 'score': 11.32}, {'connected_gene': 'FBXW5', 'score': 10.78}, {'connected_gene': 'C8G', 'score': 10.78}, {'connected_gene': 'MAN1B1', 'score': 10.41}, {'connected_gene': 'SEC16A', 'score': 10.17}, {'connected_gene': 'QSOX2', 'score': 9.92}, {'connected_gene': 'SDCCAG3', 'score': 9.71}, {'connected_gene': 'ENSG00000273066', 'score': 0.77}, {'connected_gene': 'ENSG00000272896', 'score': 0.77}, {'connected_gene': 'ENSG00000272679', 'score': 0.44}]
chr9	GH09I136821	136821669	136821838	0.2	[{'connected_gene': 'CCDC183', 'score': 18.27}, {'connected_gene': 'AJM1', 'score': 12.27}, {'connected_gene': 'MAMDC4', 'score': 12.24}, {'connected_gene': 'PHPT1', 'score': 12.24}, {'connected_gene': 'LCN12', 'score': 11.68}, {'connected_gene': 'FBXW5', 'score': 11.59}, {'connected_gene': 'C8G', 'score': 11.59}, {'connected_gene': 'MIR4292', 'score': 0.44}, {'connected_gene': 'NCLP1', 'score': 0.44}, {'connected_gene': 'RABL6', 'score': 0.39}, {'connected_gene': 'ENSG00000272679', 'score': 0.34}]
chr9	GH09I136823	136821909	136822058	0.2	[{'connected_gene': 'CCDC183', 'score': 12.55}, {'connected_gene': 'AJM1', 'score': 12.27}, {'connected_gene': 'MAMDC4', 'score': 12.24}, {'connected_gene': 'PHPT1', 'score': 12.24}, {'connected_gene': 'LCN12', 'score': 11.68}, {'connected_gene': 'FBXW5', 'score': 11.59}, {'connected_gene': 'C8G', 'score': 11.59}, {'connected_gene': 'MIR4292', 'score': 0.44}, {'connected_gene': 'NCLP1', 'score': 0.44}, {'connected_gene': 'RABL6', 'score': 0.39}, {'connected_gene': 'ENSG00000272679', 'score': 0.34}]
chr9	GH09I137221	137221486	137232704	2.85	[{'connected_gene': 'RNF224', 'score': 556.63}, {'connected_gene': 'SLC34A3', 'score': 555.96}, {'connected_gene': 'EHMT1', 'score': 17.44}, {'connected_gene': 'LOC651337', 'score': 15.59}, {'connected_gene': 'SDCCAG3', 'score': 15.1}, {'connected_gene': 'ANAPC2', 'score': 12.28}, {'connected_gene': 'RNF208', 'score': 7.2}, {'connected_gene': 'CYSRT1', 'score': 7.15}, {'connected_gene': 'NDOR1', 'score': 6.77}, {'connected_gene': 'MRPL41', 'score': 5.76}, {'connected_gene': 'GRIN1', 'score': 3.3}, {'connected_gene': 'FBXW5', 'score': 2.93}, {'connected_gene': 'NSMF', 'score': 2.57}, {'connected_gene': 'NPDC1', 'score': 2.53}, {'connected_gene': 'ARRDC1-AS1', 'score': 2.52}, {'connected_gene': 'DPH7', 'score': 1.92}, {'connected_gene': 'TPRN', 'score': 1.77}, {'connected_gene': 'NELFB', 'score': 1.57}, {'connected_gene': 'RABL6', 'score': 1.51}, {'connected_gene': 'ABCA2', 'score': 1.5}, {'connected_gene': 'TMEM203', 'score': 1.43}, {'connected_gene': 'SSNA1', 'score': 1.43}]
chr9	GH09I136940	136940358	136941249	0.69	[{'connected_gene': 'FBXW5', 'score': 0.77}, {'connected_gene': 'ENSG00000260190', 'score': 0.77}]
chr9	GH09I136942	136942142	136952779	2.31	[{'connected_gene': 'LCN12', 'score': 576.76}, {'connected_gene': 'FBXW5', 'score': 550.77}, {'connected_gene': 'C8G', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 38.22}, {'connected_gene': 'SDCCAG3', 'score': 27.54}, {'connected_gene': 'DPH7', 'score': 20.39}, {'connected_gene': 'ANAPC2', 'score': 17.43}, {'connected_gene': 'SEC16A', 'score': 14.79}, {'connected_gene': 'LOC651337', 'score': 13.62}, {'connected_gene': 'NDOR1', 'score': 13.13}, {'connected_gene': 'MAN1B1', 'score': 12.58}, {'connected_gene': 'RABL6', 'score': 10.32}, {'connected_gene': 'SNHG7', 'score': 10.13}, {'connected_gene': 'LCNL1', 'score': 6.82}]
chr9	GH09I136784	136784686	136786448	0.9	[{'connected_gene': 'LCN8', 'score': 18.35}, {'connected_gene': 'ABCA2', 'score': 14.93}, {'connected_gene': 'NDOR1', 'score': 12.38}, {'connected_gene': 'LCN10', 'score': 11.91}, {'connected_gene': 'CCDC183-AS1', 'score': 11.84}, {'connected_gene': 'RABL6', 'score': 11.84}, {'connected_gene': 'LCN12', 'score': 11.32}, {'connected_gene': 'PRR31', 'score': 11.31}, {'connected_gene': 'FBXW5', 'score': 10.78}, {'connected_gene': 'C8G', 'score': 10.78}, {'connected_gene': 'MAN1B1', 'score': 9.69}, {'connected_gene': 'TMEM141', 'score': 7.23}, {'connected_gene': 'ATP6V1G1P3', 'score': 0.44}]
chr9	GH09I136884	136884710	136887839	2.23	[{'connected_gene': 'MIR4479', 'score': 550.77}, {'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'LOC105376326', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 38.48}, {'connected_gene': 'SDCCAG3', 'score': 24.18}, {'connected_gene': 'ANAPC2', 'score': 22.04}, {'connected_gene': 'PHPT1', 'score': 21.75}, {'connected_gene': 'SNHG7', 'score': 16.35}, {'connected_gene': 'LOC651337', 'score': 15.58}, {'connected_gene': 'MAMDC4', 'score': 12.44}, {'connected_gene': 'AJM1', 'score': 12.42}, {'connected_gene': 'FBXW5', 'score': 11.85}, {'connected_gene': 'C8G', 'score': 11.85}, {'connected_gene': 'LCN12', 'score': 11.84}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'PRR31', 'score': 11.74}, {'connected_gene': 'CCDC183-AS1', 'score': 11.55}, {'connected_gene': 'RABL6', 'score': 11.55}, {'connected_gene': 'CCDC183', 'score': 11.54}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'EXD3', 'score': 10.7}, {'connected_gene': 'MAN1B1', 'score': 10.32}, {'connected_gene': 'DPP7', 'score': 10.31}, {'connected_gene': 'GRIN1', 'score': 10.31}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'DPH7', 'score': 9.84}, {'connected_gene': 'LCNL1', 'score': 5.9}]
chr9	GH09I136881	136881316	136884008	1.4	[{'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'PHPT1', 'score': 23.32}, {'connected_gene': 'MAMDC4', 'score': 12.46}, {'connected_gene': 'AJM1', 'score': 12.44}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'LCN12', 'score': 11.77}, {'connected_gene': 'PRR31', 'score': 11.73}, {'connected_gene': 'FBXW5', 'score': 11.6}, {'connected_gene': 'C8G', 'score': 11.6}, {'connected_gene': 'RABL6', 'score': 11.39}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'CCDC183', 'score': 11.36}, {'connected_gene': 'CCDC183-AS1', 'score': 10.91}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'ANAPC2', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'LOC105376326', 'score': 0.77}]
chr9	GH09I136939	136939288	136940227	0.67	[{'connected_gene': 'ENSG00000260190', 'score': 550.77}, {'connected_gene': 'LCN12', 'score': 20.8}, {'connected_gene': 'FBXW5', 'score': 0.44}]