PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290167	[[22443797, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456344], [22469338, 22469459]]	[[22446542, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456344], [22469338, 22469415]]
ENST00000542383	[[22446520, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456344], [22470224, 22470385]]	[[22446542, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456256]]
ENST00000415567	[[22453530, 22453974], [22456108, 22456344]]	[[22453759, 22453974], [22456108, 22456344]]
ENST00000441048	[[22453966, 22453974], [22456108, 22456344], [22470224, 22470462]]	[[22453966, 22453974], [22456108, 22456256]]
NM_030761	[[22443797, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456344], [22469338, 22469519]]	[[22446542, 22447010], [22447703, 22447846], [22447937, 22448069], [22456108, 22456344], [22469338, 22469415]]

Promoter

Chrom	Start	End	Description
chr1	22469532	22469541	CAGE_peak_4_at_WNT4_5end
chr1	22469560	22469567	CAGE_peak_3_at_WNT4_5end
chr1	22469582	22469595	CAGE_peak_1_at_WNT4_5end
chr1	22469609	22469630	CAGE_peak_2_at_WNT4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I022450	22450179	22453483	2.13	[{'connected_gene': 'ZBTB40', 'score': 573.21}, {'connected_gene': 'PIR59957', 'score': 550.77}, {'connected_gene': 'KDM1A', 'score': 14.07}, {'connected_gene': 'CDC42-IT1', 'score': 11.45}, {'connected_gene': 'ENSG00000271428', 'score': 10.68}, {'connected_gene': 'WNT4', 'score': 10.13}, {'connected_gene': 'USP48', 'score': 10.0}]
chr1	GH01I022153	22153151	22154894	0.43	[{'connected_gene': 'TEX46', 'score': 4.74}, {'connected_gene': 'HSPG2', 'score': 4.5}, {'connected_gene': 'LOC105376850', 'score': 0.44}, {'connected_gene': 'WNT4', 'score': 0.39}, {'connected_gene': 'LOC105376845', 'score': 0.39}]
chr1	GH01I022107	22107791	22109164	0.69	[{'connected_gene': 'WNT4', 'score': 11.39}, {'connected_gene': 'CDC42', 'score': 5.95}, {'connected_gene': 'ENSG00000271840', 'score': 0.44}, {'connected_gene': 'GC01M022117', 'score': 0.39}]
chr1	GH01I022503	22503674	22504852	0.46	[{'connected_gene': 'WNT4', 'score': 9.73}, {'connected_gene': 'GC01P022509', 'score': 0.44}, {'connected_gene': 'PIR59957', 'score': 0.23}, {'connected_gene': 'ZBTB40', 'score': 0.18}]
chr1	GH01I022446	22446984	22449912	0.83	[{'connected_gene': 'WNT4', 'score': 10.13}, {'connected_gene': 'ZBTB40', 'score': 8.06}, {'connected_gene': 'PIR59957', 'score': 0.77}]
chr1	GH01I022500	22500313	22501223	0.73	[{'connected_gene': 'WNT4', 'score': 9.73}, {'connected_gene': 'GC01P022509', 'score': 0.44}, {'connected_gene': 'PIR59957', 'score': 0.25}, {'connected_gene': 'ZBTB40', 'score': 0.19}]
chr1	GH01I022442	22442419	22445563	0.56	[{'connected_gene': 'WNT4', 'score': 10.13}, {'connected_gene': 'USP48', 'score': 4.45}, {'connected_gene': 'PIR59957', 'score': 0.44}, {'connected_gene': 'ZBTB40', 'score': 0.37}]
chr1	GH01I022273	22273585	22276221	0.68	[{'connected_gene': 'WNT4', 'score': 10.92}, {'connected_gene': 'LUZP1', 'score': 4.23}, {'connected_gene': 'MIR4418', 'score': 0.44}, {'connected_gene': 'PPIAP34', 'score': 0.25}]
chr1	GH01I022112	22112442	22113420	0.31	[{'connected_gene': 'WNT4', 'score': 11.83}, {'connected_gene': 'LINC00339', 'score': 8.12}, {'connected_gene': 'CDC42', 'score': 4.74}, {'connected_gene': 'GC01M022117', 'score': 0.44}, {'connected_gene': 'ENSG00000271840', 'score': 0.39}]
chr1	GH01I022211	22211932	22219011	0.63	[{'connected_gene': 'WNT4', 'score': 11.34}, {'connected_gene': 'LINC00339', 'score': 7.46}, {'connected_gene': 'LOC105376850', 'score': 0.23}, {'connected_gene': 'MIR4418', 'score': 0.23}]
chr1	GH01I022142	22142600	22143801	1.23	[{'connected_gene': 'WNT4', 'score': 550.77}, {'connected_gene': 'GC01P022144', 'score': 550.77}, {'connected_gene': 'LINC00339', 'score': 21.21}, {'connected_gene': 'LOC105376845', 'score': 0.77}]
chr1	GH01I022388	22388126	22389713	0.57	[{'connected_gene': 'WNT4', 'score': 10.72}, {'connected_gene': 'ENSG00000279625', 'score': 0.34}, {'connected_gene': 'LOC105376856', 'score': 0.29}]
chr1	GH01I022375	22375320	22376802	0.46	[{'connected_gene': 'WNT4', 'score': 16.58}, {'connected_gene': 'ENSG00000279625', 'score': 0.44}, {'connected_gene': 'LOC105376856', 'score': 0.26}]
chr1	GH01I022387	22387948	22388097	0.31	[{'connected_gene': 'WNT4', 'score': 10.72}, {'connected_gene': 'ENSG00000279625', 'score': 0.34}, {'connected_gene': 'LOC105376856', 'score': 0.29}]
chr1	GH01I022407	22407228	22407377	0.2	[{'connected_gene': 'WNT4', 'score': 10.57}, {'connected_gene': 'LOC105376856', 'score': 0.39}, {'connected_gene': 'ENSG00000279625', 'score': 0.26}]
chr1	GH01I022206	22206766	22209898	0.62	[{'connected_gene': 'WNT4', 'score': 11.05}, {'connected_gene': 'LOC105376850', 'score': 0.26}, {'connected_gene': 'MIR4418', 'score': 0.22}]
chr1	GH01I022077	22077299	22078757	0.52	[{'connected_gene': 'WNT4', 'score': 10.31}, {'connected_gene': 'LINC01635', 'score': 5.19}, {'connected_gene': 'GC01P022081', 'score': 0.77}, {'connected_gene': 'ENSG00000271428', 'score': 0.44}, {'connected_gene': 'CDC42', 'score': 0.31}]
chr1	GH01I022320	22320112	22321425	0.59	[{'connected_gene': 'WNT4', 'score': 11.23}, {'connected_gene': 'PPIAP34', 'score': 0.77}, {'connected_gene': 'MIR4418', 'score': 0.23}]
chr1	GH01I022297	22297128	22297277	0.64	[{'connected_gene': 'WNT4', 'score': 5.12}, {'connected_gene': 'PPIAP34', 'score': 0.31}, {'connected_gene': 'MIR4418', 'score': 0.29}]
chr1	GH01I022348	22348468	22348617	0.91	[{'connected_gene': 'WNT4', 'score': 10.74}, {'connected_gene': 'GC01M022351', 'score': 0.77}, {'connected_gene': 'PPIAP34', 'score': 0.31}]
chr1	GH01I022219	22219041	22220334	0.56	[{'connected_gene': 'WNT4', 'score': 11.33}, {'connected_gene': 'MIR4418', 'score': 0.25}, {'connected_gene': 'LOC105376850', 'score': 0.22}]
chr1	GH01I022285	22285350	22286458	1.13	[{'connected_gene': 'WNT4', 'score': 11.21}, {'connected_gene': 'MIR4418', 'score': 0.37}, {'connected_gene': 'PPIAP34', 'score': 0.28}]
chr1	GH01I022846	22846401	22846800	0.43	[{'connected_gene': 'WNT4', 'score': 9.41}, {'connected_gene': 'ENSG00000225952', 'score': 0.44}, {'connected_gene': 'MIR4253', 'score': 0.37}, {'connected_gene': 'EPHB2', 'score': 0.12}]
chr1	GH01I022111	22111748	22111897	0.72	[{'connected_gene': 'WNT4', 'score': 11.45}, {'connected_gene': 'GC01M022117', 'score': 0.44}, {'connected_gene': 'ENSG00000271840', 'score': 0.39}]
chr1	GH01I022362	22362511	22364001	0.67	[{'connected_gene': 'WNT4', 'score': 7.54}, {'connected_gene': 'ENSG00000279625', 'score': 0.77}, {'connected_gene': 'GC01M022351', 'score': 0.39}]
chr1	GH01I022015	22015277	22015590	0.43	[{'connected_gene': 'HSPG2', 'score': 11.32}, {'connected_gene': 'WNT4', 'score': 10.34}, {'connected_gene': 'CDC42', 'score': 6.64}, {'connected_gene': 'RNU6-776P', 'score': 0.77}, {'connected_gene': 'LINC00339', 'score': 0.44}]
chr1	GH01I022106	22106121	22107425	0.31	[{'connected_gene': 'LINC00339', 'score': 18.14}, {'connected_gene': 'WNT4', 'score': 11.39}, {'connected_gene': 'CDC42', 'score': 5.96}, {'connected_gene': 'ENSG00000271840', 'score': 0.44}, {'connected_gene': 'GC01M022117', 'score': 0.39}]
chr1	GH01I022121	22121309	22123091	1.04	[{'connected_gene': 'LINC00339', 'score': 34.6}, {'connected_gene': 'WNT4', 'score': 12.1}, {'connected_gene': 'CDC42', 'score': 4.73}, {'connected_gene': 'PIR60757', 'score': 0.77}, {'connected_gene': 'GC01M022117', 'score': 0.77}]
chr1	GH01I022083	22083375	22085147	0.2	[{'connected_gene': 'LINC00339', 'score': 26.41}, {'connected_gene': 'WNT4', 'score': 10.61}, {'connected_gene': 'LINC01635', 'score': 5.18}, {'connected_gene': 'GC01P022081', 'score': 0.77}, {'connected_gene': 'PIR57871', 'score': 0.44}, {'connected_gene': 'GC01P022090', 'score': 0.44}, {'connected_gene': 'CDC42', 'score': 0.29}]
chr1	GH01I022074	22074335	22077020	1.05	[{'connected_gene': 'LINC00339', 'score': 31.3}, {'connected_gene': 'WNT4', 'score': 10.31}, {'connected_gene': 'LINC01635', 'score': 5.21}, {'connected_gene': 'ENSG00000271428', 'score': 0.44}, {'connected_gene': 'GC01P022081', 'score': 0.44}, {'connected_gene': 'CDC42', 'score': 0.34}]
chr1	GH01I022113	22113809	22115903	0.98	[{'connected_gene': 'LINC00339', 'score': 25.77}, {'connected_gene': 'WNT4', 'score': 12.07}, {'connected_gene': 'GC01M022117', 'score': 0.77}, {'connected_gene': 'ENSG00000271840', 'score': 0.39}]
chr1	GH01I022018	22018453	22020399	1.66	[{'connected_gene': 'LINC00339', 'score': 14.5}, {'connected_gene': 'HSPG2', 'score': 11.31}, {'connected_gene': 'WNT4', 'score': 10.34}, {'connected_gene': 'CDC42', 'score': 10.0}, {'connected_gene': 'ZBTB40', 'score': 8.32}, {'connected_gene': 'LINC01635', 'score': 7.47}, {'connected_gene': 'RNU6-776P', 'score': 0.44}]
chr1	GH01I022022	22022801	22023201	1.04	[{'connected_gene': 'LINC00339', 'score': 594.52}, {'connected_gene': 'HSPG2', 'score': 11.3}, {'connected_gene': 'WNT4', 'score': 10.34}, {'connected_gene': 'KDM1A', 'score': 9.99}, {'connected_gene': 'RNU6-776P', 'score': 0.39}]
chr1	GH01I022133	22132028	22132157	0.97	[{'connected_gene': 'LINC00339', 'score': 27.81}, {'connected_gene': 'LOC105376845', 'score': 0.44}, {'connected_gene': 'PIR60757', 'score': 0.44}, {'connected_gene': 'WNT4', 'score': 0.39}]
chr1	GH01I022132	22132608	22132757	0.51	[{'connected_gene': 'LINC00339', 'score': 11.94}, {'connected_gene': 'LOC105376845', 'score': 0.44}, {'connected_gene': 'PIR60757', 'score': 0.44}, {'connected_gene': 'WNT4', 'score': 0.39}]
chr1	GH01I022136	22136861	22138070	0.72	[{'connected_gene': 'LINC00339', 'score': 5.08}, {'connected_gene': 'LOC105376845', 'score': 0.77}, {'connected_gene': 'WNT4', 'score': 0.44}, {'connected_gene': 'PIR60757', 'score': 0.39}]
chr1	GH01I022023	22023843	22027633	1.81	[{'connected_gene': 'LINC00339', 'score': 656.69}, {'connected_gene': 'LINC01635', 'score': 556.05}, {'connected_gene': 'ZBTB40', 'score': 36.85}, {'connected_gene': 'CDC42-IT1', 'score': 31.55}, {'connected_gene': 'ENSG00000271428', 'score': 20.23}, {'connected_gene': 'KDM1A', 'score': 14.07}, {'connected_gene': 'HSPG2', 'score': 11.42}, {'connected_gene': 'NBPF3', 'score': 11.34}, {'connected_gene': 'CDC42', 'score': 11.32}, {'connected_gene': 'WNT4', 'score': 10.34}, {'connected_gene': 'USP48', 'score': 10.04}, {'connected_gene': 'ZBTB40-IT1', 'score': 9.7}]
chr1	GH01I022233	22233363	22243262	0.65	[{'connected_gene': 'KDM1A', 'score': 16.65}, {'connected_gene': 'WNT4', 'score': 11.55}, {'connected_gene': 'CDC42', 'score': 4.52}, {'connected_gene': 'MIR4418', 'score': 0.31}, {'connected_gene': 'LOC105376850', 'score': 0.19}]
chr1	GH01I022162	22162438	22163981	0.62	[{'connected_gene': 'LOC105376850', 'score': 550.77}, {'connected_gene': 'LINC00339', 'score': 11.63}, {'connected_gene': 'LINC01635', 'score': 5.06}, {'connected_gene': 'WNT4', 'score': 0.37}]
chr1	GH01I022134	22132200	22132401	0.96	[{'connected_gene': 'LOC105376845', 'score': 0.44}, {'connected_gene': 'PIR60757', 'score': 0.44}, {'connected_gene': 'WNT4', 'score': 0.39}]
chr1	GH01I022140	22140839	22141185	0.53	[{'connected_gene': 'LOC105376845', 'score': 550.77}, {'connected_gene': 'CELA3A', 'score': 7.07}, {'connected_gene': 'CELA3B', 'score': 7.02}, {'connected_gene': 'LINC00339', 'score': 6.13}, {'connected_gene': 'WNT4', 'score': 0.77}, {'connected_gene': 'GC01P022144', 'score': 0.77}]
chr1	GH01I022088	22088765	22090686	0.92	[{'connected_gene': 'PIR57871', 'score': 550.77}, {'connected_gene': 'GC01P022090', 'score': 550.77}, {'connected_gene': 'WNT4', 'score': 10.62}, {'connected_gene': 'CDC42', 'score': 6.36}, {'connected_gene': 'LINC01635', 'score': 5.17}, {'connected_gene': 'GC01P022081', 'score': 0.44}]
chr1	GH01I022079	22079873	22080870	0.2	[{'connected_gene': 'GC01P022081', 'score': 550.77}, {'connected_gene': 'WNT4', 'score': 10.31}, {'connected_gene': 'ENSG00000271428', 'score': 0.39}, {'connected_gene': 'CDC42', 'score': 0.31}]
chr1	GH01I022349	22349398	22351838	0.9	[{'connected_gene': 'GC01M022351', 'score': 550.77}, {'connected_gene': 'WNT4', 'score': 10.74}, {'connected_gene': 'PPIAP34', 'score': 0.31}]
chr1	GH01I022098	22098861	22101921	0.54	[{'connected_gene': 'ENSG00000271840', 'score': 550.77}, {'connected_gene': 'LINC00339', 'score': 27.15}, {'connected_gene': 'WNT4', 'score': 10.68}, {'connected_gene': 'CDC42', 'score': 4.77}, {'connected_gene': 'LINC01635', 'score': 4.66}, {'connected_gene': 'PIR57871', 'score': 0.39}, {'connected_gene': 'GC01P022090', 'score': 0.39}]
chr1	GH01I022117	22117958	22119571	0.86	[{'connected_gene': 'GC01M022117', 'score': 550.77}, {'connected_gene': 'LINC00339', 'score': 22.05}, {'connected_gene': 'WNT4', 'score': 12.07}, {'connected_gene': 'CDC42', 'score': 4.73}, {'connected_gene': 'ENSG00000271840', 'score': 0.37}]