PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000316649	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137366101]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137365865]]
ENST00000367748	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137338104, 137338240], [137365777, 137366298]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137338104, 137338174]]
ENST00000541547	[[137322428, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365228, 137365411]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338181]]
ENST00000468393	[[137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137338104, 137338240], [137365777, 137366101]]	None
ENST00000367746	[[137330024, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137366101]]	[[137330402, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137365865]]
ENST00000461799	[[137359063, 137359268], [137365228, 137365385]]	None
ENST00000460306	[[137359111, 137359268], [137363921, 137364095], [137365777, 137366101]]	None
NM_001278722	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365228, 137365449]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338181]]
NM_014432	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137366317]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137332410, 137332589], [137338104, 137338240], [137365777, 137365865]]
NM_001278723	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137338104, 137338240], [137365777, 137366317]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330629], [137338104, 137338174]]
NM_001278724	[[137321107, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330563], [137338104, 137338240], [137365777, 137366317]]	[[137322694, 137323492], [137325757, 137325897], [137329735, 137329880], [137330453, 137330563], [137338104, 137338174]]

Promoter

Chrom	Start	End	Description
chr6	137365402	137365416	CAGE_peak_8_at_IL20RA_5end
chr6	137365847	137365891	CAGE_peak_1_at_IL20RA_5end
chr6	137366096	137366111	CAGE_peak_2_at_IL20RA_5end
chr6	137366163	137366174	CAGE_peak_3_at_IL20RA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I137013	137013136	137014433	0.6	[{'connected_gene': 'BCLAF1', 'score': 13.19}, {'connected_gene': 'IL20RA', 'score': 12.18}, {'connected_gene': 'GC06P137009', 'score': 0.77}]
chr6	GH06I137043	137043801	137045356	1.77	[{'connected_gene': 'IL20RA', 'score': 557.94}, {'connected_gene': 'BCLAF1', 'score': 17.95}, {'connected_gene': 'GC06P137009', 'score': 0.28}]
chr6	GH06I136958	136958054	136958502	0.2	[{'connected_gene': 'IL20RA', 'score': 4.65}, {'connected_gene': 'RPL35AP3', 'score': 0.37}, {'connected_gene': 'ENSG00000207247', 'score': 0.34}]
chr6	GH06I136955	136955717	136958032	0.76	[{'connected_gene': 'IL20RA', 'score': 4.96}, {'connected_gene': 'RPL35AP3', 'score': 0.37}, {'connected_gene': 'ENSG00000207247', 'score': 0.34}]
chr6	GH06I136989	136989084	136990553	1.18	[{'connected_gene': 'IL20RA', 'score': 9.51}, {'connected_gene': 'SLC35D3', 'score': 1.43}, {'connected_gene': 'NHEG1', 'score': 0.77}, {'connected_gene': 'RPL35AP3', 'score': 0.37}]
chr6	GH06I137024	137024088	137028222	0.78	[{'connected_gene': 'IL20RA', 'score': 18.29}, {'connected_gene': 'ENSG00000235399', 'score': 12.04}, {'connected_gene': 'NHEG1', 'score': 12.04}, {'connected_gene': 'GC06P137009', 'score': 0.37}]
chr6	GH06I137051	137051576	137052573	0.38	[{'connected_gene': 'IL20RA', 'score': 7.06}, {'connected_gene': 'GC06P137009', 'score': 0.26}, {'connected_gene': 'GC06P137115', 'score': 0.21}]
chr6	GH06I137034	137034004	137034153	0.8	[{'connected_gene': 'IL20RA', 'score': 0.39}, {'connected_gene': 'GC06P137009', 'score': 0.34}]
chr6	GH06I137036	137036984	137037133	0.46	[{'connected_gene': 'IL20RA', 'score': 0.44}, {'connected_gene': 'GC06P137009', 'score': 0.31}]
chr6	GH06I136920	136920755	136924140	1.76	[{'connected_gene': 'SLC35D3', 'score': 569.98}, {'connected_gene': 'GC06M136918', 'score': 550.77}, {'connected_gene': 'BCLAF1', 'score': 17.96}, {'connected_gene': 'PEX7', 'score': 5.86}, {'connected_gene': 'IL20RA', 'score': 4.16}, {'connected_gene': 'ENSG00000207247', 'score': 0.39}]
chr6	GH06I137092	137092004	137092153	0.31	[{'connected_gene': 'OLIG3', 'score': 10.11}, {'connected_gene': 'GC06P137115', 'score': 0.34}, {'connected_gene': 'IL20RA', 'score': 0.25}]
chr6	GH06I137093	137093313	137094613	1.01	[{'connected_gene': 'OLIG3', 'score': 9.48}, {'connected_gene': 'GC06P137115', 'score': 0.34}, {'connected_gene': 'IL20RA', 'score': 0.25}]
chr6	GH06I137076	137076624	137076813	0.79	[{'connected_gene': 'OLIG3', 'score': 9.64}, {'connected_gene': 'IL20RA', 'score': 0.29}, {'connected_gene': 'GC06P137115', 'score': 0.28}]
chr6	GH06I137094	137094895	137096700	1.26	[{'connected_gene': 'IL22RA2', 'score': 11.77}, {'connected_gene': 'IL20RA', 'score': 5.93}, {'connected_gene': 'GC06P137115', 'score': 0.34}]
chr6	GH06I137097	137097179	137097305	0.77	[{'connected_gene': 'IL22RA2', 'score': 11.77}, {'connected_gene': 'GC06P137115', 'score': 0.37}, {'connected_gene': 'IL20RA', 'score': 0.23}]
chr6	GH06I137098	137098966	137107962	1.24	[{'connected_gene': 'IL22RA2', 'score': 11.5}, {'connected_gene': 'IFNGR1', 'score': 11.29}, {'connected_gene': 'OLIG3', 'score': 9.38}, {'connected_gene': 'GC06P137115', 'score': 0.39}, {'connected_gene': 'IL20RA', 'score': 0.22}]
chr6	GH06I136968	136968800	136970633	0.76	[{'connected_gene': 'NHEG1', 'score': 12.39}, {'connected_gene': 'ENSG00000235399', 'score': 12.36}, {'connected_gene': 'IL20RA', 'score': 8.5}, {'connected_gene': 'RPL35AP3', 'score': 0.77}, {'connected_gene': 'ENSG00000207247', 'score': 0.29}]
chr6	GH06I137000	137000767	137002027	0.97	[{'connected_gene': 'ENSG00000235399', 'score': 0.44}, {'connected_gene': 'GC06P137009', 'score': 0.44}, {'connected_gene': 'IL20RA', 'score': 0.26}]
chr6	GH06I137015	137015518	137017625	0.2	[{'connected_gene': 'ENSG00000235399', 'score': 11.58}, {'connected_gene': 'NHEG1', 'score': 11.58}, {'connected_gene': 'IL20RA', 'score': 5.58}, {'connected_gene': 'GC06P137009', 'score': 0.44}]