PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr3	142315225	142315290	CAGE_peak_1_at_PLS1_5end
chr3	142315294	142315315	CAGE_peak_3_at_PLS1_5end
chr3	142342233	142342236	CAGE_peak_6_at_PLS1_5end
chr3	142342240	142342247	CAGE_peak_4_at_PLS1_5end
chr3	142342260	142342309	CAGE_peak_2_at_PLS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I142594	142594894	142598741	2.07	[{'connected_gene': 'PLS1', 'score': 556.45}, {'connected_gene': 'ATR', 'score': 7.11}, {'connected_gene': 'XRN1', 'score': 4.91}, {'connected_gene': 'PLS1-AS1', 'score': 0.22}, {'connected_gene': 'LOC105374136', 'score': 0.21}]
chr3	GH03I142618	142618228	142619868	0.84	[{'connected_gene': 'PLS1', 'score': 17.7}, {'connected_gene': 'RNA5SP143', 'score': 11.63}, {'connected_gene': 'ATR', 'score': 6.64}, {'connected_gene': 'XRN1', 'score': 5.75}, {'connected_gene': 'PLS1-AS1', 'score': 0.28}, {'connected_gene': 'LOC105374136', 'score': 0.28}]
chr3	GH03I142662	142662762	142666373	0.54	[{'connected_gene': 'PLS1', 'score': 11.4}, {'connected_gene': 'RNA5SP143', 'score': 11.39}, {'connected_gene': 'ATR', 'score': 6.0}, {'connected_gene': 'GC03P142674', 'score': 0.44}, {'connected_gene': 'LOC105374136', 'score': 0.44}]
chr3	GH03I142647	142647692	142648404	0.67	[{'connected_gene': 'PLS1', 'score': 10.69}, {'connected_gene': 'RNA5SP143', 'score': 10.68}, {'connected_gene': 'ATR', 'score': 8.3}, {'connected_gene': 'PLS1-AS1', 'score': 0.44}, {'connected_gene': 'LOC105374136', 'score': 0.44}]
chr3	GH03I142904	142904594	142905399	0.88	[{'connected_gene': 'PLS1', 'score': 10.61}, {'connected_gene': 'RNA5SP143', 'score': 10.6}, {'connected_gene': 'PCOLCE2', 'score': 9.67}, {'connected_gene': 'LOC100507389', 'score': 0.34}]
chr3	GH03I142645	142645099	142646608	0.59	[{'connected_gene': 'PLS1', 'score': 11.29}, {'connected_gene': 'RNA5SP143', 'score': 11.28}, {'connected_gene': 'PLS1-AS1', 'score': 0.39}, {'connected_gene': 'LOC105374136', 'score': 0.39}]
chr3	GH03I142623	142623375	142623434	0.68	[{'connected_gene': 'PLS1', 'score': 561.63}, {'connected_gene': 'RNA5SP143', 'score': 11.61}, {'connected_gene': 'PLS1-AS1', 'score': 0.29}, {'connected_gene': 'LOC105374136', 'score': 0.29}]
chr3	GH03I142622	142622559	142622708	0.2	[{'connected_gene': 'PLS1', 'score': 11.63}, {'connected_gene': 'RNA5SP143', 'score': 11.61}, {'connected_gene': 'PLS1-AS1', 'score': 0.29}, {'connected_gene': 'LOC105374136', 'score': 0.29}]
chr3	GH03I142646	142646813	142646872	0.5	[{'connected_gene': 'PLS1', 'score': 560.69}, {'connected_gene': 'RNA5SP143', 'score': 10.68}, {'connected_gene': 'PLS1-AS1', 'score': 0.44}, {'connected_gene': 'LOC105374136', 'score': 0.39}]
chr3	GH03I142601	142601585	142604011	0.31	[{'connected_gene': 'ATR', 'score': 17.24}, {'connected_gene': 'RPL6P9', 'score': 10.82}, {'connected_gene': 'XRN1', 'score': 7.45}, {'connected_gene': 'PLS1', 'score': 6.13}, {'connected_gene': 'PLS1-AS1', 'score': 0.23}, {'connected_gene': 'LOC105374136', 'score': 0.23}]
chr3	GH03I142862	142862619	142864552	1.03	[{'connected_gene': 'PCOLCE2', 'score': 11.82}, {'connected_gene': 'LOC100507389', 'score': 10.75}, {'connected_gene': 'PLS1', 'score': 10.14}, {'connected_gene': 'RNA5SP143', 'score': 10.14}, {'connected_gene': 'RPL8P3', 'score': 0.28}]
chr3	GH03I142997	142997309	143003533	2.3	[{'connected_gene': 'U2SURP', 'score': 568.2}, {'connected_gene': 'LOC100289361', 'score': 550.77}, {'connected_gene': 'XRN1', 'score': 34.43}, {'connected_gene': 'PBX2P1', 'score': 27.86}, {'connected_gene': 'ATR', 'score': 18.15}, {'connected_gene': 'ST13P15', 'score': 11.78}, {'connected_gene': 'PAQR9-AS1', 'score': 11.44}, {'connected_gene': 'PAQR9', 'score': 11.44}, {'connected_gene': 'TFDP2', 'score': 11.04}, {'connected_gene': 'LOC100507389', 'score': 10.84}, {'connected_gene': 'PLS1', 'score': 10.45}, {'connected_gene': 'RNA5SP143', 'score': 10.45}, {'connected_gene': 'GC03M142971', 'score': 0.28}]
chr3	GH03I142499	142499998	142502028	0.63	[{'connected_gene': 'RNU1-100P', 'score': 10.59}, {'connected_gene': 'RNA5SP143', 'score': 10.21}, {'connected_gene': 'PLS1', 'score': 10.2}, {'connected_gene': 'XRN1', 'score': 8.63}, {'connected_gene': 'GC03M142460', 'score': 0.31}, {'connected_gene': 'SUCLG2P1', 'score': 0.29}, {'connected_gene': 'ATR', 'score': 0.18}]
chr3	GH03I142508	142508508	142509487	0.51	[{'connected_gene': 'RNU1-100P', 'score': 10.94}, {'connected_gene': 'RNA5SP143', 'score': 10.32}, {'connected_gene': 'PLS1', 'score': 10.31}, {'connected_gene': 'ATR', 'score': 7.71}, {'connected_gene': 'SUCLG2P1', 'score': 0.34}, {'connected_gene': 'GC03M142460', 'score': 0.28}]
chr3	GH03I142994	142994079	142994248	0.78	[{'connected_gene': 'PAQR9-AS1', 'score': 11.45}, {'connected_gene': 'PAQR9', 'score': 11.45}, {'connected_gene': 'LOC100507389', 'score': 10.86}, {'connected_gene': 'PLS1', 'score': 10.45}, {'connected_gene': 'RNA5SP143', 'score': 10.45}, {'connected_gene': 'LOC100289361', 'score': 0.44}, {'connected_gene': 'U2SURP', 'score': 0.31}, {'connected_gene': 'GC03M142971', 'score': 0.26}]
chr3	GH03I142656	142656844	142656903	0.68	[{'connected_gene': 'PLS1-AS1', 'score': 550.77}, {'connected_gene': 'LOC105374136', 'score': 550.77}, {'connected_gene': 'PLS1', 'score': 550.21}]
chr3	GH03I142613	142613187	142615003	0.43	[{'connected_gene': 'RNA5SP143', 'score': 12.38}, {'connected_gene': 'ATR', 'score': 6.84}, {'connected_gene': 'PLS1', 'score': 5.63}, {'connected_gene': 'PLS1-AS1', 'score': 0.26}, {'connected_gene': 'LOC105374136', 'score': 0.26}]
chr3	GH03I142987	142987800	142988001	0.49	[{'connected_gene': 'LOC100507389', 'score': 11.62}, {'connected_gene': 'PAQR9', 'score': 11.56}, {'connected_gene': 'PAQR9-AS1', 'score': 11.53}, {'connected_gene': 'PLS1', 'score': 10.72}, {'connected_gene': 'RNA5SP143', 'score': 10.72}, {'connected_gene': 'LOC100289361', 'score': 0.39}, {'connected_gene': 'U2SURP', 'score': 0.34}, {'connected_gene': 'GC03M142971', 'score': 0.25}]
chr3	GH03I142988	142987001	142987200	0.65	[{'connected_gene': 'LOC100507389', 'score': 11.62}, {'connected_gene': 'PAQR9', 'score': 11.56}, {'connected_gene': 'PAQR9-AS1', 'score': 11.53}, {'connected_gene': 'PLS1', 'score': 10.72}, {'connected_gene': 'RNA5SP143', 'score': 10.72}, {'connected_gene': 'LOC100289361', 'score': 0.39}, {'connected_gene': 'U2SURP', 'score': 0.34}, {'connected_gene': 'GC03M142971', 'score': 0.25}]
chr3	GH03I142808	142808239	142808388	0.72	[{'connected_gene': 'LOC100507389', 'score': 10.64}, {'connected_gene': 'PCOLCE2', 'score': 10.56}, {'connected_gene': 'RNA5SP143', 'score': 10.27}, {'connected_gene': 'PLS1', 'score': 10.26}, {'connected_gene': 'GC03P142802', 'score': 0.44}, {'connected_gene': 'RPL8P3', 'score': 0.37}]
chr3	GH03I142875	142875997	142881382	0.56	[{'connected_gene': 'LOC100507389', 'score': 11.05}, {'connected_gene': 'PAQR9-AS1', 'score': 10.88}, {'connected_gene': 'PAQR9', 'score': 10.88}, {'connected_gene': 'RNA5SP143', 'score': 9.43}, {'connected_gene': 'PLS1', 'score': 9.43}, {'connected_gene': 'SLC9A9', 'score': 5.46}, {'connected_gene': 'PCOLCE2', 'score': 0.39}, {'connected_gene': 'RPL8P3', 'score': 0.23}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000457734	[[142315228, 142315351], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142432506]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]
ENST00000483373	[[142315257, 142315351], [142346657, 142346750], [142364137, 142364422], [142383043, 142383149], [142388231, 142388261]]	[[142383079, 142383149], [142388231, 142388261]]
ENST00000475296	[[142315259, 142315351], [142346657, 142346750], [142383043, 142383149], [142388231, 142388395], [142389834, 142389959]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389959]]
ENST00000495744	[[142315273, 142315351], [142364137, 142364422], [142383043, 142383149], [142388231, 142388336]]	[[142383079, 142383149], [142388231, 142388336]]
ENST00000476044	[[142315279, 142315351], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408514]]	[[142389837, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408514]]
ENST00000461644	[[142315281, 142315351], [142316078, 142316190], [142338294, 142338480], [142383043, 142383149], [142388231, 142388324]]	[[142383079, 142383149], [142388231, 142388324]]
ENST00000464320	[[142315296, 142315351], [142316078, 142316190], [142383043, 142383149], [142388231, 142388395], [142389834, 142389961]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389961]]
ENST00000337777	[[142342227, 142342404], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142432501]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]
ENST00000497199	[[142342248, 142342404], [142364137, 142364422], [142383043, 142383149], [142388231, 142388319]]	[[142383079, 142383149], [142388231, 142388319]]
ENST00000497002	[[142375738, 142376022], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430897]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]
ENST00000460104	[[142382963, 142383149], [142388231, 142388395], [142389834, 142389887]]	None
ENST00000483507	[[142408471, 142408655], [142413310, 142413389], [142416794, 142417280]]	None
NM_001145319	[[142315228, 142315351], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142432506]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]
NM_002670	[[142342265, 142342404], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142432506]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]
NM_001172312	[[142375738, 142376022], [142383043, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142432506]]	[[142383079, 142383149], [142388231, 142388395], [142389834, 142389964], [142394998, 142395131], [142396873, 142396955], [142402847, 142403013], [142403094, 142403237], [142405125, 142405218], [142408459, 142408655], [142413310, 142413389], [142416794, 142416909], [142422709, 142422843], [142423304, 142423428], [142430342, 142430467], [142430713, 142430849]]