PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000357525	[[118869460, 118869555], [118879987, 118881893]]	[[118880084, 118880243]]
NM_002667	[[118869425, 118869555], [118879987, 118882878]]	[[118880084, 118880243]]

Promoter

Chrom	Start	End	Description
chr6	118869452	118869475	CAGE_peak_1_at_PLN_5end
chr6	118869482	118869497	CAGE_peak_2_at_PLN_5end
chr6	118869507	118869518	CAGE_peak_3_at_PLN_5end
chr6	118880031	118880048	CAGE_peak_5_at_PLN_5end
chr6	118880085	118880101	CAGE_peak_4_at_PLN_5end
chr6	118880179	118880186	CAGE_peak_8_at_PLN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I118548	118548249	118548308	0.99	[{'connected_gene': 'PLN', 'score': 550.77}, {'connected_gene': 'BRD7P3', 'score': 0.25}, {'connected_gene': 'CEP85L', 'score': 0.1}]
chr6	GH06I118291	118291307	118291989	0.2	[{'connected_gene': 'PLN', 'score': 11.09}, {'connected_gene': 'SLC35F1', 'score': 6.41}, {'connected_gene': 'PIR48915', 'score': 0.14}, {'connected_gene': 'GC06M118401', 'score': 0.14}, {'connected_gene': 'LOC105377967', 'score': 0.08}]
chr6	GH06I118325	118325083	118327016	0.2	[{'connected_gene': 'PLN', 'score': 7.54}, {'connected_gene': 'PIR48915', 'score': 0.19}, {'connected_gene': 'GC06M118401', 'score': 0.19}, {'connected_gene': 'LOC105377967', 'score': 0.07}]
chr6	GH06I118334	118334897	118336196	0.31	[{'connected_gene': 'PLN', 'score': 5.45}, {'connected_gene': 'PIR48915', 'score': 0.21}, {'connected_gene': 'GC06M118401', 'score': 0.21}, {'connected_gene': 'LOC105377967', 'score': 0.07}]
chr6	GH06I118576	118576093	118576410	0.24	[{'connected_gene': 'PLN', 'score': 11.8}, {'connected_gene': 'SSXP10', 'score': 0.39}, {'connected_gene': 'CEP85L', 'score': 0.12}]
chr6	GH06I118536	118536042	118538613	1.5	[{'connected_gene': 'PLN', 'score': 39.12}, {'connected_gene': 'SSXP10', 'score': 16.71}, {'connected_gene': 'BRD7P3', 'score': 0.28}, {'connected_gene': 'CEP85L', 'score': 0.09}]
chr6	GH06I118292	118292019	118297629	0.43	[{'connected_gene': 'PLN', 'score': 11.09}, {'connected_gene': 'SSXP10', 'score': 8.29}, {'connected_gene': 'SLC35F1', 'score': 6.55}, {'connected_gene': 'PIR48915', 'score': 0.14}, {'connected_gene': 'GC06M118401', 'score': 0.14}, {'connected_gene': 'LOC105377967', 'score': 0.08}]
chr6	GH06I118509	118509022	118510310	0.46	[{'connected_gene': 'CEP85L', 'score': 5.54}, {'connected_gene': 'BRD7P3', 'score': 0.44}, {'connected_gene': 'PLN', 'score': 0.28}]
chr6	GH06I118525	118525376	118526906	0.31	[{'connected_gene': 'BRD7P3', 'score': 0.34}, {'connected_gene': 'PLN', 'score': 0.34}, {'connected_gene': 'CEP85L', 'score': 0.09}]
chr6	GH06I118315	118315390	118322838	0.65	[{'connected_gene': 'SLC35F1', 'score': 9.02}, {'connected_gene': 'PLN', 'score': 7.63}, {'connected_gene': 'SSXP10', 'score': 5.71}, {'connected_gene': 'PIR48915', 'score': 0.18}, {'connected_gene': 'GC06M118401', 'score': 0.18}, {'connected_gene': 'LOC105377967', 'score': 0.07}]
chr6	GH06I118305	118305651	118311517	0.43	[{'connected_gene': 'SLC35F1', 'score': 9.43}, {'connected_gene': 'SSXP10', 'score': 7.94}, {'connected_gene': 'PLN', 'score': 4.2}, {'connected_gene': 'PIR48915', 'score': 0.16}, {'connected_gene': 'GC06M118401', 'score': 0.16}, {'connected_gene': 'LOC105377967', 'score': 0.07}]
chr6	GH06I118510	118510943	118513791	0.31	[{'connected_gene': 'SSXP10', 'score': 16.66}, {'connected_gene': 'PLN', 'score': 12.13}, {'connected_gene': 'CEP85L', 'score': 5.46}, {'connected_gene': 'BRD7P3', 'score': 0.39}]
chr6	GH06I118551	118551001	118552177	1.07	[{'connected_gene': 'SSXP10', 'score': 14.89}, {'connected_gene': 'PLN', 'score': 0.77}, {'connected_gene': 'CEP85L', 'score': 0.1}]
chr6	GH06I118580	118580600	118583139	0.99	[{'connected_gene': 'SSXP10', 'score': 16.92}, {'connected_gene': 'PLN', 'score': 0.29}, {'connected_gene': 'CEP85L', 'score': 0.13}]
chr6	GH06I118513	118513972	118515844	0.2	[{'connected_gene': 'SSXP10', 'score': 16.67}, {'connected_gene': 'PLN', 'score': 12.14}, {'connected_gene': 'BRD7P3', 'score': 0.39}, {'connected_gene': 'CEP85L', 'score': 0.08}]
chr6	GH06I118527	118527522	118529308	0.2	[{'connected_gene': 'SSXP10', 'score': 15.25}, {'connected_gene': 'CEP85L', 'score': 5.28}, {'connected_gene': 'PLN', 'score': 0.37}, {'connected_gene': 'BRD7P3', 'score': 0.31}]
chr6	GH06I118375	118375982	118378769	0.96	[{'connected_gene': 'SSXP10', 'score': 12.01}, {'connected_gene': 'CEP85L', 'score': 4.42}, {'connected_gene': 'PLN', 'score': 1.84}, {'connected_gene': 'SLC35F1', 'score': 1.25}, {'connected_gene': 'PIR48915', 'score': 0.34}, {'connected_gene': 'GC06M118401', 'score': 0.34}, {'connected_gene': 'LOC105377967', 'score': 0.06}]
chr6	GH06I118557	118557793	118560023	0.98	[{'connected_gene': 'SSXP10', 'score': 11.12}, {'connected_gene': 'CEP85L', 'score': 9.38}, {'connected_gene': 'PLN', 'score': 0.39}]
chr6	GH06I118564	118564938	118565914	0.65	[{'connected_gene': 'SSXP10', 'score': 16.82}, {'connected_gene': 'CEP85L', 'score': 5.89}, {'connected_gene': 'PLN', 'score': 0.37}]
chr6	GH06I118505	118505272	118509010	0.75	[{'connected_gene': 'SSXP10', 'score': 16.69}, {'connected_gene': 'CEP85L', 'score': 5.66}, {'connected_gene': 'BRD7P3', 'score': 0.44}, {'connected_gene': 'PLN', 'score': 0.26}]