PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000417185	[[38048986, 38049349], [38049504, 38049826]]	None
ENST00000461445	[[38048986, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050649], [38050762, 38051302], [38051394, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38070996, 38071050]]	None
ENST00000463876	[[38048988, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38065827, 38066278]]	[[38049263, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38065827, 38065924]]
ENST00000334661	[[38048988, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38070996, 38071253]]	[[38049263, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38070996, 38071030]]
ENST00000495395	[[38049764, 38049858], [38049948, 38050255]]	None
ENST00000484829	[[38049953, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051766], [38051851, 38051913]]	None
ENST00000495367	[[38050068, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051374]]	None
ENST00000479619	[[38052783, 38052936], [38053034, 38053164], [38057981, 38058210], [38060460, 38060525]]	None
ENST00000473834	[[38061719, 38061843], [38065646, 38066067]]	None
NR_024071	[[38048986, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38065827, 38066278]]	None
NM_001130964	[[38048986, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38065827, 38066278]]	[[38049263, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38065827, 38065924]]
NM_006225	[[38048986, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38070996, 38071154]]	[[38049263, 38049349], [38049504, 38049654], [38049725, 38049858], [38049948, 38050127], [38050532, 38050649], [38050762, 38050922], [38051143, 38051302], [38051394, 38051544], [38051621, 38051766], [38051851, 38052053], [38052704, 38052936], [38053034, 38053164], [38057981, 38058210], [38061678, 38061843], [38070996, 38071030]]

Promoter

Chrom	Start	End	Description
chr3	38060516	38060530	CAGE_peak_10_at_PLCD1_5end
chr3	38060540	38060563	CAGE_peak_7_at_PLCD1_5end
chr3	38060565	38060575	CAGE_peak_13_at_PLCD1_5end
chr3	38060580	38060593	CAGE_peak_14_at_PLCD1_5end
chr3	38065955	38065976	CAGE_peak_6_at_PLCD1_5end
chr3	38065993	38066017	CAGE_peak_3_at_PLCD1_5end
chr3	38066019	38066041	CAGE_peak_4_at_PLCD1_5end
chr3	38071108	38071121	CAGE_peak_2_at_PLCD1_5end
chr3	38071122	38071141	CAGE_peak_1_at_PLCD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I038163	38163201	38171195	2.78	[{'connected_gene': 'OXSR1', 'score': 590.52}, {'connected_gene': 'LOC101928234', 'score': 550.77}, {'connected_gene': 'GORASP1', 'score': 21.99}, {'connected_gene': 'NDUFAF4P3', 'score': 21.97}, {'connected_gene': 'ACAA1', 'score': 20.38}, {'connected_gene': 'MYD88', 'score': 19.35}, {'connected_gene': 'ACVR2B', 'score': 11.9}, {'connected_gene': 'C3orf35', 'score': 11.75}, {'connected_gene': 'SLC22A13', 'score': 11.07}, {'connected_gene': 'ACVR2B-AS1', 'score': 10.25}, {'connected_gene': 'VILL', 'score': 7.7}, {'connected_gene': 'PLCD1', 'score': 2.97}, {'connected_gene': 'DLEC1', 'score': 1.38}, {'connected_gene': 'SLC22A14', 'score': 1.29}, {'connected_gene': 'GC03P038253', 'score': 0.17}, {'connected_gene': 'PIR62277', 'score': 0.17}]
chr3	GH03I038037	38037750	38040728	1.95	[{'connected_gene': 'DLEC1', 'score': 558.86}, {'connected_gene': 'PLCD1', 'score': 5.93}, {'connected_gene': 'PPP2R2DP1', 'score': 0.39}]
chr3	GH03I038147	38147435	38150399	1.44	[{'connected_gene': 'SLC22A13', 'score': 10.42}, {'connected_gene': 'VILL', 'score': 8.54}, {'connected_gene': 'MYD88', 'score': 4.66}, {'connected_gene': 'PLCD1', 'score': 4.34}, {'connected_gene': 'OXSR1', 'score': 3.84}]
chr3	GH03I038028	38028036	38032362	2.42	[{'connected_gene': 'PLCD1', 'score': 560.08}, {'connected_gene': 'DLEC1', 'score': 0.44}]
chr3	GH03I038085	38084630	38084779	0.43	[{'connected_gene': 'PLCD1', 'score': 5.27}, {'connected_gene': 'GC03M038048', 'score': 0.31}, {'connected_gene': 'PIR60395', 'score': 0.29}, {'connected_gene': 'DLEC1', 'score': 0.25}]
chr3	GH03I038108	38108401	38109400	0.46	[{'connected_gene': 'PLCD1', 'score': 6.19}, {'connected_gene': 'PIR60395', 'score': 0.44}, {'connected_gene': 'LOC105377033', 'score': 0.39}, {'connected_gene': 'ACAA1', 'score': 0.31}, {'connected_gene': 'GC03M038048', 'score': 0.23}, {'connected_gene': 'DLEC1', 'score': 0.19}]
chr3	GH03I038022	38022977	38026310	2.21	[{'connected_gene': 'PLCD1', 'score': 550.44}, {'connected_gene': 'ENSG00000200579', 'score': 0.39}]
chr3	GH03I038011	38011010	38011734	0.31	[{'connected_gene': 'VILL', 'score': 13.93}, {'connected_gene': 'GC03P038014', 'score': 0.77}, {'connected_gene': 'PLCD1', 'score': 0.37}]
chr3	GH03I038015	38015041	38021270	0.88	[{'connected_gene': 'VILL', 'score': 12.66}, {'connected_gene': 'CTDSPL', 'score': 11.63}, {'connected_gene': 'ITGA9-AS1', 'score': 11.63}, {'connected_gene': 'PLCD1', 'score': 4.97}, {'connected_gene': 'ENSG00000200579', 'score': 0.77}]
chr3	GH03I038102	38102002	38102902	0.63	[{'connected_gene': 'MYD88', 'score': 13.96}, {'connected_gene': 'VILL', 'score': 13.76}, {'connected_gene': 'ACAA1', 'score': 11.76}, {'connected_gene': 'SLC22A13', 'score': 11.07}, {'connected_gene': 'PLCD1', 'score': 6.24}, {'connected_gene': 'OXSR1', 'score': 2.95}, {'connected_gene': 'SLC22A14', 'score': 2.92}, {'connected_gene': 'PIR60395', 'score': 0.39}, {'connected_gene': 'GC03M038048', 'score': 0.25}, {'connected_gene': 'DLEC1', 'score': 0.21}]
chr3	GH03I038010	38010001	38010400	0.51	[{'connected_gene': 'GC03P038014', 'score': 0.77}, {'connected_gene': 'PLCD1', 'score': 0.37}, {'connected_gene': 'VILL', 'score': 0.34}]