PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376573	[[22823777, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23003111, 23003484]]	[[22826129, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23003111, 23003255]]
ENST00000545335	[[22825943, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23002864, 23003037]]	[[22826129, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898613]]
ENST00000605011	[[22930950, 22930991], [22935147, 22935201], [22948538, 22948659], [22950671, 22950804], [22980550, 22980759]]	None
ENST00000323883	[[22825666, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22857941, 22857983], [22862239, 22862386], [22880557, 22880642]]	[[22826129, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22857941, 22857983], [22862239, 22862386], [22880557, 22880587]]
ENST00000474335	[[22825821, 22826210], [22828394, 22828564]]	None
ENST00000604912	[[22830880, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880604]]	[[22830880, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880587]]
ENST00000422321	[[22856465, 22856699], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646]]	None
ENST00000432610	[[22896746, 22896952], [22898548, 22898646]]	None
NM_001330062	[[22823765, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23002864, 23003037]]	[[22826129, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898613]]
NM_005028	[[22823765, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23003111, 23003503]]	[[22826129, 22826210], [22828899, 22829003], [22830732, 22830976], [22839587, 22839701], [22856779, 22856818], [22862239, 22862386], [22880557, 22880710], [22896855, 22896952], [22898548, 22898646], [23003111, 23003255]]

Promoter

Chrom	Start	End	Description
chr10	22825620	22825656	CAGE_peak_2_at_PIP4K2A_5end
chr10	22825878	22825894	CAGE_peak_5_at_PIP4K2A_5end
chr10	23003406	23003417	CAGE_peak_4_at_PIP4K2A_5end
chr10	23003436	23003459	CAGE_peak_3_at_PIP4K2A_5end
chr10	23003460	23003562	CAGE_peak_1_at_PIP4K2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I022572	22572713	22574443	0.83	[{'connected_gene': 'BMI1', 'score': 12.74}, {'connected_gene': 'PIP4K2A', 'score': 6.26}, {'connected_gene': 'LOC105376453', 'score': 5.52}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.44}, {'connected_gene': 'ENSG00000279819', 'score': 0.13}]
chr10	GH10I022553	22553052	22553201	1.16	[{'connected_gene': 'BMI1', 'score': 12.74}, {'connected_gene': 'ENSG00000261671', 'score': 9.74}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.39}, {'connected_gene': 'LOC105376450', 'score': 0.18}, {'connected_gene': 'PIP4K2A', 'score': 0.1}]
chr10	GH10I023556	23556801	23557522	0.61	[{'connected_gene': 'KIAA1217', 'score': 10.1}, {'connected_gene': 'PIP4K2A', 'score': 4.56}, {'connected_gene': 'GC10P023565', 'score': 0.44}, {'connected_gene': 'LOC105376454', 'score': 0.39}]
chr10	GH10I022596	22596240	22638514	1.83	[{'connected_gene': 'PIP4K2A', 'score': 20.83}, {'connected_gene': 'BMI1', 'score': 20.81}, {'connected_gene': 'ENSG00000261671', 'score': 9.73}, {'connected_gene': 'MSRB2', 'score': 5.22}, {'connected_gene': 'COMMD3', 'score': 4.95}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.23}, {'connected_gene': 'ENSG00000279819', 'score': 0.18}]
chr10	GH10I022641	22641429	22660419	1.31	[{'connected_gene': 'PIP4K2A', 'score': 20.04}, {'connected_gene': 'COMMD3', 'score': 5.09}, {'connected_gene': 'ENSG00000279819', 'score': 0.26}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.17}]
chr10	GH10I022638	22638536	22639619	0.2	[{'connected_gene': 'PIP4K2A', 'score': 6.99}, {'connected_gene': 'COMMD3', 'score': 4.09}, {'connected_gene': 'ENSG00000279819', 'score': 0.22}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.18}]
chr10	GH10I022675	22675777	22687080	1.48	[{'connected_gene': 'PIP4K2A', 'score': 20.27}, {'connected_gene': 'COMMD3', 'score': 4.37}, {'connected_gene': 'ENSG00000279819', 'score': 0.39}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.13}]
chr10	GH10I022664	22664356	22670593	1.34	[{'connected_gene': 'PIP4K2A', 'score': 6.53}, {'connected_gene': 'COMMD3', 'score': 4.75}, {'connected_gene': 'ENSG00000279819', 'score': 0.31}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.15}]
chr10	GH10I022737	22737712	22738001	0.93	[{'connected_gene': 'PIP4K2A', 'score': 12.44}, {'connected_gene': 'RNU6-413P', 'score': 0.25}]
chr10	GH10I022742	22742336	22743241	0.72	[{'connected_gene': 'PIP4K2A', 'score': 0.31}, {'connected_gene': 'RNU6-413P', 'score': 0.26}]
chr10	GH10I022720	22720599	22721049	0.43	[{'connected_gene': 'PIP4K2A', 'score': 0.44}, {'connected_gene': 'RNU6-413P', 'score': 0.2}]
chr10	GH10I022723	22723167	22724200	0.98	[{'connected_gene': 'PIP4K2A', 'score': 0.44}, {'connected_gene': 'RNU6-413P', 'score': 0.21}]
chr10	GH10I022574	22574686	22581643	0.49	[{'connected_gene': 'PIP4K2A', 'score': 6.44}, {'connected_gene': 'LOC105376453', 'score': 5.41}, {'connected_gene': 'YWHAZP3', 'score': 4.47}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.39}, {'connected_gene': 'ENSG00000279819', 'score': 0.13}]
chr10	GH10I022850	22850980	22852291	0.7	[{'connected_gene': 'PIP4K2A', 'score': 12.7}, {'connected_gene': 'LOC105376451', 'score': 0.77}, {'connected_gene': 'GC10P022788', 'score': 0.21}]
chr10	GH10I022805	22805220	22806021	0.66	[{'connected_gene': 'PIP4K2A', 'score': 11.14}, {'connected_gene': 'GC10P022788', 'score': 0.37}, {'connected_gene': 'LOC105376451', 'score': 0.25}]
chr10	GH10I022513	22513601	22514400	1.09	[{'connected_gene': 'PIP4K2A', 'score': 6.09}, {'connected_gene': 'LOC105376450', 'score': 0.26}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.25}]
chr10	GH10I023016	23015366	23015653	0.54	[{'connected_gene': 'PIP4K2A', 'score': 6.08}, {'connected_gene': 'RNA5SP304', 'score': 0.37}, {'connected_gene': 'MSRB2', 'score': 0.18}, {'connected_gene': 'ARMC3', 'score': 0.17}]
chr10	GH10I022988	22988972	22989141	0.86	[{'connected_gene': 'PIP4K2A', 'score': 6.3}, {'connected_gene': 'RNA5SP304', 'score': 0.44}, {'connected_gene': 'GC10M022921', 'score': 0.22}, {'connected_gene': 'ARMC3', 'score': 0.21}]
chr10	GH10I022531	22531325	22532455	0.54	[{'connected_gene': 'PIP4K2A', 'score': 8.7}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.29}, {'connected_gene': 'LOC105376450', 'score': 0.21}]
chr10	GH10I022549	22549704	22550781	0.6	[{'connected_gene': 'PIP4K2A', 'score': 13.9}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.39}, {'connected_gene': 'LOC105376450', 'score': 0.18}]
chr10	GH10I022554	22553824	22555521	1.25	[{'connected_gene': 'PIP4K2A', 'score': 7.98}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.44}, {'connected_gene': 'LOC105376450', 'score': 0.18}]
chr10	GH10I022532	22532996	22540456	0.68	[{'connected_gene': 'PIP4K2A', 'score': 12.81}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.31}, {'connected_gene': 'LOC105376450', 'score': 0.2}]
chr10	GH10I022540	22540935	22545978	0.49	[{'connected_gene': 'PIP4K2A', 'score': 15.36}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.34}, {'connected_gene': 'LOC105376450', 'score': 0.19}]
chr10	GH10I022672	22672601	22673200	1.15	[{'connected_gene': 'PIP4K2A', 'score': 16.42}, {'connected_gene': 'ENSG00000279819', 'score': 0.34}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.14}]
chr10	GH10I022687	22687316	22688351	0.2	[{'connected_gene': 'PIP4K2A', 'score': 12.96}, {'connected_gene': 'ENSG00000279819', 'score': 0.44}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.13}]
chr10	GH10I022581	22581954	22585447	0.52	[{'connected_gene': 'PIP4K2A', 'score': 6.06}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.34}, {'connected_gene': 'ENSG00000279819', 'score': 0.14}]
chr10	GH10I022591	22591773	22595682	0.38	[{'connected_gene': 'PIP4K2A', 'score': 20.2}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.29}, {'connected_gene': 'ENSG00000279819', 'score': 0.15}]
chr10	GH10I022689	22689089	22692001	1.02	[{'connected_gene': 'PIP4K2A', 'score': 12.98}, {'connected_gene': 'ENSG00000279819', 'score': 0.77}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.13}]
chr10	GH10I022639	22639942	22641069	0.38	[{'connected_gene': 'PIP4K2A', 'score': 7.41}, {'connected_gene': 'ENSG00000279819', 'score': 0.23}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.18}]
chr10	GH10I022661	22661634	22663818	0.66	[{'connected_gene': 'PIP4K2A', 'score': 18.91}, {'connected_gene': 'ENSG00000279819', 'score': 0.29}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.15}]
chr10	GH10I022589	22589071	22590726	0.2	[{'connected_gene': 'PIP4K2A', 'score': 6.6}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.31}, {'connected_gene': 'ENSG00000279819', 'score': 0.15}]
chr10	GH10I022586	22586879	22588492	0.31	[{'connected_gene': 'PIP4K2A', 'score': 19.29}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.34}, {'connected_gene': 'ENSG00000279819', 'score': 0.14}]
chr10	GH10I022566	22566033	22567157	0.2	[{'connected_gene': 'PIP4K2A', 'score': 7.54}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.77}, {'connected_gene': 'ENSG00000279819', 'score': 0.13}]
chr10	GH10I022674	22674001	22675000	0.72	[{'connected_gene': 'PIP4K2A', 'score': 17.86}, {'connected_gene': 'ENSG00000279819', 'score': 0.34}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.14}]
chr10	GH10I022709	22709368	22715386	2.2	[{'connected_gene': 'PIP4K2A', 'score': 550.77}, {'connected_gene': 'GC10P022702', 'score': 0.44}]
chr10	GH10I023051	23051316	23054257	1.05	[{'connected_gene': 'MSRB2', 'score': 10.59}, {'connected_gene': 'PIP4K2A', 'score': 4.66}, {'connected_gene': 'RNA5SP304', 'score': 0.22}]
chr10	GH10I022738	22738652	22738821	0.73	[{'connected_gene': 'OTUD1', 'score': 20.36}, {'connected_gene': 'PIP4K2A', 'score': 12.44}, {'connected_gene': 'ENSG00000261671', 'score': 11.65}, {'connected_gene': 'COMMD3', 'score': 10.17}, {'connected_gene': 'RNU6-413P', 'score': 0.25}]
chr10	GH10I022849	22849056	22850161	1.22	[{'connected_gene': 'ARMC3', 'score': 3.04}, {'connected_gene': 'PIP4K2A', 'score': 2.02}, {'connected_gene': 'LOC105376451', 'score': 0.77}, {'connected_gene': 'GC10P022788', 'score': 0.21}]
chr10	GH10I022765	22765788	22767010	0.69	[{'connected_gene': 'RNU6-413P', 'score': 12.86}, {'connected_gene': 'PIP4K2A', 'score': 11.11}]
chr10	GH10I022569	22569872	22571405	0.4	[{'connected_gene': 'LOC105376453', 'score': 4.99}, {'connected_gene': 'YWHAZP3', 'score': 4.72}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.44}, {'connected_gene': 'ENSG00000279819', 'score': 0.13}, {'connected_gene': 'PIP4K2A', 'score': 0.11}]
chr10	GH10I022562	22562405	22565318	0.52	[{'connected_gene': 'TRP-GGG1-1', 'score': 550.77}, {'connected_gene': 'PIP4K2A', 'score': 13.04}, {'connected_gene': 'ENSG00000279819', 'score': 0.12}]
chr10	GH10I022587	22586312	22586481	0.72	[{'connected_gene': 'TRP-GGG1-1', 'score': 0.34}, {'connected_gene': 'ENSG00000279819', 'score': 0.14}, {'connected_gene': 'PIP4K2A', 'score': 0.13}]
chr10	GH10I022550	22550852	22551041	0.77	[{'connected_gene': 'TRP-GGG1-1', 'score': 0.39}, {'connected_gene': 'LOC105376450', 'score': 0.18}, {'connected_gene': 'PIP4K2A', 'score': 0.1}]
chr10	GH10I022671	22671401	22671600	0.4	[{'connected_gene': 'ENSG00000279819', 'score': 0.34}, {'connected_gene': 'PIP4K2A', 'score': 0.26}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.14}]
chr10	GH10I022692	22692361	22695048	1.6	[{'connected_gene': 'ENSG00000279819', 'score': 550.77}, {'connected_gene': 'PIP4K2A', 'score': 0.34}, {'connected_gene': 'TRP-GGG1-1', 'score': 0.12}]
chr10	GH10I022707	22707152	22708969	0.43	[{'connected_gene': 'GC10P022702', 'score': 0.44}, {'connected_gene': 'PIP4K2A', 'score': 0.44}]
chr10	GH10I022700	22700001	22702661	1.19	[{'connected_gene': 'GC10P022702', 'score': 550.77}, {'connected_gene': 'ENSG00000279819', 'score': 0.44}, {'connected_gene': 'PIP4K2A', 'score': 0.39}]
chr10	GH10I022699	22699401	22699800	0.51	[{'connected_gene': 'GC10P022702', 'score': 0.77}, {'connected_gene': 'ENSG00000279819', 'score': 0.77}, {'connected_gene': 'PIP4K2A', 'score': 0.39}]
chr10	GH10I022704	22704238	22706406	1.12	[{'connected_gene': 'GC10P022702', 'score': 0.77}, {'connected_gene': 'PIP4K2A', 'score': 0.44}]
chr10	GH10I022697	22697478	22698781	0.43	[{'connected_gene': 'GC10P022702', 'score': 0.77}, {'connected_gene': 'ENSG00000279819', 'score': 0.77}, {'connected_gene': 'PIP4K2A', 'score': 0.37}]