PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr18	39535152	39535232	CAGE_peak_1_at_PIK3C3_5end
chr18	39535239	39535250	CAGE_peak_2_at_PIK3C3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I041972	41972249	41973406	0.6	[{'connected_gene': 'PIK3C3', 'score': 5.83}, {'connected_gene': 'KC6', 'score': 4.44}, {'connected_gene': 'GC18M041981', 'score': 0.39}]
chr18	GH18I042095	42095175	42096685	0.2	[{'connected_gene': 'PIK3C3', 'score': 5.51}, {'connected_gene': 'ENSG00000267088', 'score': 0.44}, {'connected_gene': 'GC18P042131', 'score': 0.28}]
chr18	GH18I042113	42113192	42115086	1.03	[{'connected_gene': 'PIK3C3', 'score': 10.47}, {'connected_gene': 'GC18P042131', 'score': 0.37}, {'connected_gene': 'ENSG00000267088', 'score': 0.34}]
chr18	GH18I041991	41991887	41993062	0.8	[{'connected_gene': 'PIK3C3', 'score': 12.13}, {'connected_gene': 'GC18P041990', 'score': 0.77}, {'connected_gene': 'GC18P042007', 'score': 0.37}]
chr18	GH18I042100	42100713	42101450	0.31	[{'connected_gene': 'PIK3C3', 'score': 5.43}, {'connected_gene': 'ENSG00000267088', 'score': 0.39}, {'connected_gene': 'GC18P042131', 'score': 0.29}]
chr18	GH18I042047	42047125	42048966	0.87	[{'connected_gene': 'PIK3C3', 'score': 5.67}, {'connected_gene': 'ENSG00000276174', 'score': 0.77}, {'connected_gene': 'GC18P042007', 'score': 0.26}]
chr18	GH18I041937	41937507	41941715	0.92	[{'connected_gene': 'PIK3C3', 'score': 6.5}, {'connected_gene': 'GC18M041930', 'score': 0.44}]
chr18	GH18I041966	41966511	41968373	0.31	[{'connected_gene': 'PIK3C3', 'score': 6.25}, {'connected_gene': 'GC18M041981', 'score': 0.37}]
chr18	GH18I041954	41954516	41956818	1.95	[{'connected_gene': 'PIK3C3', 'score': 558.0}, {'connected_gene': 'GC18M041981', 'score': 0.29}]
chr18	GH18I041960	41960712	41960975	0.45	[{'connected_gene': 'PIK3C3', 'score': 0.44}, {'connected_gene': 'GC18M041981', 'score': 0.34}]
chr18	GH18I042038	42038072	42039885	0.43	[{'connected_gene': 'ENSG00000276174', 'score': 0.39}, {'connected_gene': 'GC18P042007', 'score': 0.29}, {'connected_gene': 'PIK3C3', 'score': 0.18}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000262039	[[39535170, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39667794]]	[[39535256, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]
ENST00000398870	[[39535218, 39535324], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39667794]]	[[39535256, 39535324], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]
ENST00000586545	[[39535220, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39551402]]	[[39535256, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39550495]]
ENST00000590220	[[39535226, 39535324], [39537653, 39537723]]	None
ENST00000585528	[[39535382, 39535409], [39537534, 39537723], [39542453, 39542597], [39550290, 39550463]]	[[39535382, 39535409], [39537534, 39537723], [39542453, 39542597], [39550290, 39550463]]
ENST00000591011	[[39537603, 39537723], [39542453, 39542597], [39550290, 39550420], [39564843, 39565071], [39567775, 39567839]]	[[39537603, 39537723], [39542453, 39542597], [39550290, 39550420], [39564843, 39564852]]
ENST00000589550	[[39537631, 39537723], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570566]]	None
ENST00000593098	[[39605294, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661443]]	[[39607467, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]
ENST00000590013	[[39605745, 39605903], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617781]]	[[39607467, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617781]]
ENST00000596052	[[39606981, 39607275], [39607330, 39607512], [39609288, 39609395]]	[[39607467, 39607512], [39609288, 39609395]]
ENST00000597477	[[39613805, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629647]]	[[39613805, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629580]]
ENST00000589056	[[39617713, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39631276]]	[[39617775, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629580]]
ENST00000587402	[[39617735, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39629831, 39629939]]	[[39617775, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39629831, 39629839]]
ENST00000588631	[[39629255, 39629569], [39644703, 39644794], [39647351, 39647477], [39661086, 39661148]]	None
ENST00000587261	[[39637601, 39638015], [39639758, 39639858], [39644703, 39644794], [39647351, 39647374]]	[[39639832, 39639858], [39644703, 39644794], [39647351, 39647374]]
ENST00000588156	[[39637798, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661385]]	[[39637911, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]
ENST00000587328	[[39644658, 39644794], [39647351, 39647477], [39661086, 39661360]]	[[39644737, 39644794], [39647351, 39647477], [39661086, 39661101]]
NM_001308020	[[39535162, 39535324], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661448]]	[[39535256, 39535324], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]
NM_002647	[[39535162, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661448]]	[[39535256, 39535324], [39537534, 39537723], [39542453, 39542597], [39550290, 39550420], [39567775, 39567862], [39570422, 39570518], [39573233, 39573305], [39575853, 39575958], [39576601, 39576694], [39584319, 39584505], [39593405, 39593560], [39595439, 39595530], [39600601, 39600669], [39607406, 39607512], [39609288, 39609405], [39613789, 39613921], [39617655, 39617784], [39618744, 39618814], [39620640, 39620705], [39623696, 39623781], [39629494, 39629569], [39637846, 39638015], [39644703, 39644794], [39647351, 39647477], [39661086, 39661101]]