PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000284727	[[176040985, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046194], [176046383, 176049335]]	[[176043015, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046121]]
ENST00000409194	[[176042794, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046211], [176046383, 176046438]]	[[176043015, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046121]]
ENST00000392541	[[176042872, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046391]]	[[176043015, 176043130], [176043784, 176043978], [176044825, 176044906], [176046082, 176046121]]
ENST00000497075	[[176042913, 176043978], [176044825, 176044906], [176046082, 176046194], [176046383, 176046438]]	None
ENST00000472782	[[176044372, 176044906], [176046082, 176046194], [176046383, 176046423]]	None

Promoter

Chrom	Start	End	Description
chr2	176046144	176046189	CAGE_peak_2_at_ATP5G3_5end
chr2	176046192	176046216	CAGE_peak_3_at_ATP5G3_5end
chr2	176046426	176046445	CAGE_peak_1_at_ATP5G3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I175233	175233233	175233362	0.69	[{'connected_gene': 'CIR1', 'score': 11.33}, {'connected_gene': 'ATP5MC3', 'score': 9.57}, {'connected_gene': 'GC02P175236', 'score': 0.77}, {'connected_gene': 'GC02P175227', 'score': 0.44}]
chr2	GH02I175180	175180126	175182367	2.11	[{'connected_gene': 'ATP5MC3', 'score': 578.85}, {'connected_gene': 'GC02P175182', 'score': 550.77}, {'connected_gene': 'HOXD9', 'score': 10.18}, {'connected_gene': 'CIR1', 'score': 10.0}, {'connected_gene': 'HOXD4', 'score': 9.8}, {'connected_gene': 'GC02M175181', 'score': 0.77}]
chr2	GH02I175096	175096878	175098164	0.38	[{'connected_gene': 'ATP5MC3', 'score': 16.07}, {'connected_gene': 'ENSG00000229750', 'score': 10.56}, {'connected_gene': 'ATF2', 'score': 10.56}, {'connected_gene': 'MIR933', 'score': 10.56}, {'connected_gene': 'ENSG00000277948', 'score': 0.77}, {'connected_gene': 'GC02P175143', 'score': 0.25}]
chr2	GH02I175154	175154264	175155194	0.87	[{'connected_gene': 'ATP5MC3', 'score': 15.45}, {'connected_gene': 'GC02P175143', 'score': 0.39}, {'connected_gene': 'ATF2', 'score': 0.39}, {'connected_gene': 'MIR933', 'score': 0.39}]
chr2	GH02I175061	175061876	175064007	0.95	[{'connected_gene': 'ATP5MC3', 'score': 25.17}, {'connected_gene': 'CHRNA1', 'score': 10.41}, {'connected_gene': 'CHN1', 'score': 10.32}, {'connected_gene': 'ENSG00000229750', 'score': 10.31}, {'connected_gene': 'MIR933', 'score': 10.31}, {'connected_gene': 'ATF2', 'score': 10.31}, {'connected_gene': 'GC02M175073', 'score': 0.39}, {'connected_gene': 'RPL21P31', 'score': 0.31}]
chr2	GH02I175362	175362464	175362890	0.4	[{'connected_gene': 'ATP5MC3', 'score': 5.03}, {'connected_gene': 'GC02M175297', 'score': 0.21}, {'connected_gene': 'LOC105373752', 'score': 0.14}, {'connected_gene': 'PIR53550', 'score': 0.12}]
chr2	GH02I175605	175605782	175606774	0.94	[{'connected_gene': 'HOXD13', 'score': 5.53}, {'connected_gene': 'ATP5MC3', 'score': 5.26}, {'connected_gene': 'GC02P175563', 'score': 0.26}, {'connected_gene': 'PIR35160', 'score': 0.18}, {'connected_gene': 'GC02P175686', 'score': 0.18}]
chr2	GH02I175373	175373271	175374000	0.68	[{'connected_gene': 'HOXD11', 'score': 9.45}, {'connected_gene': 'ATP5MC3', 'score': 5.57}, {'connected_gene': 'GC02M175297', 'score': 0.18}, {'connected_gene': 'PIR53550', 'score': 0.13}, {'connected_gene': 'LOC105373752', 'score': 0.13}]
chr2	GH02I174775	174775492	174780944	1.47	[{'connected_gene': 'CHN1', 'score': 16.24}, {'connected_gene': 'ATP5MC3', 'score': 4.31}, {'connected_gene': 'CIR1', 'score': 1.1}, {'connected_gene': 'LOC105373750', 'score': 0.77}, {'connected_gene': 'CHRNA1', 'score': 0.44}, {'connected_gene': 'H3F3AP4', 'score': 0.22}, {'connected_gene': 'GC02P174645', 'score': 0.12}]
chr2	GH02I174980	174980744	174981941	0.31	[{'connected_gene': 'CHN1', 'score': 24.95}, {'connected_gene': 'ATP5MC3', 'score': 4.2}, {'connected_gene': 'GC02P174978', 'score': 0.77}]
chr2	GH02I175165	175165207	175169453	2.1	[{'connected_gene': 'ENSG00000229750', 'score': 550.77}, {'connected_gene': 'ATF2', 'score': 550.77}, {'connected_gene': 'MIR933', 'score': 550.77}, {'connected_gene': 'ATP5MC3', 'score': 27.97}, {'connected_gene': 'GC02P175143', 'score': 0.34}]