PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361871	[[1988210, 1989144], [1990778, 1990893], [1991257, 1991406], [1993102, 1993327]]	[[1989112, 1989144], [1990778, 1990893], [1991257, 1991406], [1993102, 1993157]]
ENST00000473663	[[1988942, 1989144], [1991257, 1991406], [1993102, 1993124]]	[[1991259, 1991406], [1993102, 1993124]]
ENST00000399753	[[1989019, 1989144], [1990778, 1991406], [1993102, 1993196]]	[[1990780, 1991406], [1993102, 1993157]]
ENST00000564908	[[1989095, 1989144], [1990778, 1990893], [1991029, 1991168], [1991257, 1991406], [1993102, 1993200]]	[[1990780, 1990893], [1991029, 1991168], [1991257, 1991406], [1993102, 1993157]]
ENST00000489198	[[1990978, 1991168], [1991257, 1991406], [1991570, 1991940]]	None
NM_016332	[[1988229, 1989144], [1990778, 1990893], [1991257, 1991406], [1993102, 1993327]]	[[1989112, 1989144], [1990778, 1990893], [1991257, 1991406], [1993102, 1993157]]

Promoter

Chrom	Start	End	Description
chr16	1993260	1993271	CAGE_peak_3_at_SEPX1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I001900	1900240	1900409	0.62	[{'connected_gene': 'FAHD1', 'score': 33.47}, {'connected_gene': 'HS3ST6', 'score': 12.58}, {'connected_gene': 'MSRB1', 'score': 11.69}, {'connected_gene': 'RPL3L', 'score': 11.65}, {'connected_gene': 'NDUFB10', 'score': 11.65}, {'connected_gene': 'GC16P001892', 'score': 0.44}, {'connected_gene': 'PIR49138', 'score': 0.44}]
chr16	GH16I001901	1900480	1900629	0.52	[{'connected_gene': 'FAHD1', 'score': 31.59}, {'connected_gene': 'HS3ST6', 'score': 12.58}, {'connected_gene': 'MSRB1', 'score': 11.69}, {'connected_gene': 'RPL3L', 'score': 11.65}, {'connected_gene': 'NDUFB10', 'score': 11.65}, {'connected_gene': 'GC16P001892', 'score': 0.44}, {'connected_gene': 'PIR49138', 'score': 0.44}]
chr16	GH16I001863	1863820	1863969	0.62	[{'connected_gene': 'HS3ST6', 'score': 12.47}, {'connected_gene': 'MEIOB', 'score': 12.45}, {'connected_gene': 'MSRB1', 'score': 12.2}, {'connected_gene': 'RPL3L', 'score': 12.18}, {'connected_gene': 'NDUFB10', 'score': 12.17}, {'connected_gene': 'SYNGR3', 'score': 10.5}, {'connected_gene': 'LOC102723890', 'score': 0.44}, {'connected_gene': 'GC16M001851', 'score': 0.44}]
chr16	GH16I001953	1953755	1955344	1.13	[{'connected_gene': 'RPL3L', 'score': 575.58}, {'connected_gene': 'ENSG00000255513', 'score': 30.49}, {'connected_gene': 'MSRB1', 'score': 0.39}]
chr16	GH16I001956	1956828	1956952	0.22	[{'connected_gene': 'RPL3L', 'score': 550.77}, {'connected_gene': 'RNF151', 'score': 83.96}, {'connected_gene': 'ENSG00000255513', 'score': 35.56}, {'connected_gene': 'BRICD5', 'score': 17.35}, {'connected_gene': 'PRSS30P', 'score': 5.68}, {'connected_gene': 'MSRB1', 'score': 0.39}]
chr16	GH16I001937	1937859	1944299	2.48	[{'connected_gene': 'MSRB1', 'score': 556.23}, {'connected_gene': 'TELO2', 'score': 17.3}, {'connected_gene': 'ENSG00000260646', 'score': 16.49}, {'connected_gene': 'CRAMP1', 'score': 14.17}, {'connected_gene': 'ENSG00000261123', 'score': 13.28}, {'connected_gene': 'LOC105371049', 'score': 12.95}, {'connected_gene': 'LOC106660606', 'score': 12.2}, {'connected_gene': 'NUBP2', 'score': 12.17}, {'connected_gene': 'FAHD1', 'score': 12.13}, {'connected_gene': 'ENSG00000260447', 'score': 11.23}, {'connected_gene': 'TSC2', 'score': 11.04}, {'connected_gene': 'SNHG19', 'score': 10.94}, {'connected_gene': 'ERVK13-1', 'score': 10.77}, {'connected_gene': 'E4F1', 'score': 10.21}, {'connected_gene': 'HAGH', 'score': 9.07}, {'connected_gene': 'ENSG00000261613', 'score': 5.49}, {'connected_gene': 'GC16M001938', 'score': 0.77}, {'connected_gene': 'RPL3L', 'score': 0.37}]
chr16	GH16I001933	1933186	1933706	0.49	[{'connected_gene': 'MSRB1', 'score': 5.38}, {'connected_gene': 'GC16M001938', 'score': 0.44}, {'connected_gene': 'HS3ST6', 'score': 0.39}]
chr16	GH16I001949	1949920	1950069	0.58	[{'connected_gene': 'MSRB1', 'score': 0.44}, {'connected_gene': 'RPL3L', 'score': 0.44}]
chr16	GH16I001944	1944340	1944489	0.98	[{'connected_gene': 'MSRB1', 'score': 550.77}, {'connected_gene': 'HAGH', 'score': 8.92}, {'connected_gene': 'RPL3L', 'score': 0.39}]
chr16	GH16I001945	1945321	1948160	0.63	[{'connected_gene': 'HAGH', 'score': 7.58}, {'connected_gene': 'ENSG00000255513', 'score': 5.71}, {'connected_gene': 'FAHD1', 'score': 4.66}, {'connected_gene': 'MSRB1', 'score': 0.77}, {'connected_gene': 'RPL3L', 'score': 0.39}]
chr16	GH16I001976	1976847	1981767	1.59	[{'connected_gene': 'NOXO1', 'score': 550.77}, {'connected_gene': 'ENSG00000255513', 'score': 13.93}, {'connected_gene': 'RPL3L', 'score': 11.97}, {'connected_gene': 'MSRB1', 'score': 11.9}, {'connected_gene': 'GFER', 'score': 8.31}, {'connected_gene': 'TBL3', 'score': 0.44}]
chr16	GH16I001895	1895872	1896344	0.43	[{'connected_gene': 'PIR49138', 'score': 550.77}, {'connected_gene': 'GC16M001894', 'score': 550.77}, {'connected_gene': 'FAHD1', 'score': 42.65}, {'connected_gene': 'HS3ST6', 'score': 12.55}, {'connected_gene': 'MSRB1', 'score': 12.32}, {'connected_gene': 'RPL3L', 'score': 12.28}, {'connected_gene': 'NDUFB10', 'score': 12.28}, {'connected_gene': 'IGFALS', 'score': 11.28}, {'connected_gene': 'HAGH', 'score': 11.21}, {'connected_gene': 'GC16P001892', 'score': 0.77}]
chr16	GH16I001855	1855330	1856102	0.2	[{'connected_gene': 'GC16M001851', 'score': 550.77}, {'connected_gene': 'FAHD1', 'score': 61.17}, {'connected_gene': 'HAGH', 'score': 34.0}, {'connected_gene': 'HS3ST6', 'score': 12.14}, {'connected_gene': 'MEIOB', 'score': 12.08}, {'connected_gene': 'IGFALS', 'score': 11.96}, {'connected_gene': 'MSRB1', 'score': 11.86}, {'connected_gene': 'RPL3L', 'score': 11.84}, {'connected_gene': 'NDUFB10', 'score': 11.84}, {'connected_gene': 'ENSG00000260541', 'score': 0.39}]
chr16	GH16I001950	1950266	1951667	0.51	[{'connected_gene': 'ENSG00000255513', 'score': 7.29}, {'connected_gene': 'MSRB1', 'score': 0.44}, {'connected_gene': 'RPL3L', 'score': 0.44}]
chr16	GH16I001468	1468973	1473453	1.34	[{'connected_gene': 'ENSG00000261430', 'score': 550.77}, {'connected_gene': 'GC16M001481', 'score': 550.77}, {'connected_gene': 'CLCN7', 'score': 40.53}, {'connected_gene': 'ENSG00000260051', 'score': 20.75}, {'connected_gene': 'ENSG00000261505', 'score': 15.6}, {'connected_gene': 'TBL3', 'score': 15.56}, {'connected_gene': 'WDR90', 'score': 15.19}, {'connected_gene': 'ZNF598', 'score': 14.88}, {'connected_gene': 'CRAMP1', 'score': 13.99}, {'connected_gene': 'TELO2', 'score': 13.65}, {'connected_gene': 'E4F1', 'score': 13.22}, {'connected_gene': 'RHOT2', 'score': 13.13}, {'connected_gene': 'TRAF7', 'score': 13.05}, {'connected_gene': 'ENSG00000260954', 'score': 13.0}, {'connected_gene': 'SNORA64', 'score': 12.49}, {'connected_gene': 'NUBP2', 'score': 12.48}, {'connected_gene': 'ENSG00000261207', 'score': 12.05}, {'connected_gene': 'ENSG00000255513', 'score': 12.0}, {'connected_gene': 'CAPN15', 'score': 11.85}, {'connected_gene': 'JMJD8', 'score': 11.41}, {'connected_gene': 'TSC2', 'score': 11.28}, {'connected_gene': 'WDR24', 'score': 11.13}, {'connected_gene': 'SNORD60', 'score': 11.09}, {'connected_gene': 'CCDC154', 'score': 10.87}, {'connected_gene': 'UBE2I', 'score': 10.6}, {'connected_gene': 'SPSB3', 'score': 10.03}, {'connected_gene': 'UNKL', 'score': 9.87}, {'connected_gene': 'BAIAP3', 'score': 5.95}, {'connected_gene': 'GNPTG', 'score': 4.6}, {'connected_gene': 'MSRB1', 'score': 3.19}, {'connected_gene': 'MAPK8IP3', 'score': 1.8}, {'connected_gene': 'PIR56401', 'score': 0.37}, {'connected_gene': 'LOC647211', 'score': 0.23}]