PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000338040	[[121311965, 121312349], [121339392, 121339425], [121340279, 121342190], [121345541, 121349139]]	[[121339422, 121339425], [121340279, 121342190], [121345541, 121345757]]
NM_016298	[[121312169, 121312349], [121339392, 121339425], [121340279, 121342190], [121345541, 121349139]]	[[121339422, 121339425], [121340279, 121342190], [121345541, 121345757]]

Promoter

Chrom	Start	End	Description
chr3	121312209	121312244	CAGE_peak_1_at_FBXO40_5end
chr3	121312289	121312298	CAGE_peak_2_at_FBXO40_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I121624	121624141	121625413	0.31	[{'connected_gene': 'IQCB1', 'score': 23.38}, {'connected_gene': 'SLC15A2', 'score': 6.37}, {'connected_gene': 'HCLS1', 'score': 5.89}, {'connected_gene': 'RN7SL172P', 'score': 0.31}, {'connected_gene': 'FBXO40', 'score': 0.29}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121625	121625611	121628282	0.2	[{'connected_gene': 'IQCB1', 'score': 23.38}, {'connected_gene': 'SLC15A2', 'score': 6.37}, {'connected_gene': 'HCLS1', 'score': 6.06}, {'connected_gene': 'RN7SL172P', 'score': 0.31}, {'connected_gene': 'FBXO40', 'score': 0.29}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121603	121603875	121604388	0.2	[{'connected_gene': 'IQCB1', 'score': 4.8}, {'connected_gene': 'FBXO40', 'score': 0.39}, {'connected_gene': 'RN7SL172P', 'score': 0.23}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121615	121615691	121616716	0.38	[{'connected_gene': 'IQCB1', 'score': 5.54}, {'connected_gene': 'FBXO40', 'score': 0.34}, {'connected_gene': 'RN7SL172P', 'score': 0.28}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121614	121614233	121615078	0.2	[{'connected_gene': 'IQCB1', 'score': 5.66}, {'connected_gene': 'FBXO40', 'score': 0.34}, {'connected_gene': 'RN7SL172P', 'score': 0.28}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121612	121612956	121613661	0.31	[{'connected_gene': 'IQCB1', 'score': 5.91}, {'connected_gene': 'FBXO40', 'score': 0.34}, {'connected_gene': 'RN7SL172P', 'score': 0.26}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121605	121605117	121606616	0.43	[{'connected_gene': 'IQCB1', 'score': 4.73}, {'connected_gene': 'FBXO40', 'score': 0.39}, {'connected_gene': 'RN7SL172P', 'score': 0.25}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121607	121607719	121608837	0.2	[{'connected_gene': 'SLC15A2', 'score': 4.9}, {'connected_gene': 'IQCB1', 'score': 4.43}, {'connected_gene': 'FBXO40', 'score': 0.37}, {'connected_gene': 'RN7SL172P', 'score': 0.25}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121591	121591901	121594537	1.38	[{'connected_gene': 'FBXO40', 'score': 550.77}, {'connected_gene': 'IQCB1', 'score': 4.77}, {'connected_gene': 'RN7SL172P', 'score': 0.21}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121610	121610725	121611224	0.2	[{'connected_gene': 'FBXO40', 'score': 0.37}, {'connected_gene': 'RN7SL172P', 'score': 0.26}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121599	121599775	121603764	0.43	[{'connected_gene': 'POLQ', 'score': 10.74}, {'connected_gene': 'IQCB1', 'score': 4.74}, {'connected_gene': 'FBXO40', 'score': 0.44}, {'connected_gene': 'RN7SL172P', 'score': 0.23}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121574	121574574	121574683	0.8	[{'connected_gene': 'POLQ', 'score': 12.25}, {'connected_gene': 'CSTA', 'score': 10.45}, {'connected_gene': 'ARGFX', 'score': 0.39}, {'connected_gene': 'FBXO40', 'score': 0.37}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121609	121609253	121610723	0.2	[{'connected_gene': 'HCLS1', 'score': 4.87}, {'connected_gene': 'EAF2', 'score': 4.72}, {'connected_gene': 'IQCB1', 'score': 4.68}, {'connected_gene': 'FBXO40', 'score': 0.37}, {'connected_gene': 'RN7SL172P', 'score': 0.26}, {'connected_gene': 'GC03M121324', 'score': 0.04}]
chr3	GH03I121628	121628723	121630973	0.31	[{'connected_gene': 'HCLS1', 'score': 5.96}, {'connected_gene': 'RN7SL172P', 'score': 0.34}, {'connected_gene': 'FBXO40', 'score': 0.28}, {'connected_gene': 'GC03M121324', 'score': 0.05}]
chr3	GH03I121648	121648734	121648883	0.38	[{'connected_gene': 'RN7SL172P', 'score': 0.44}, {'connected_gene': 'HCLS1', 'score': 0.39}, {'connected_gene': 'FBXO40', 'score': 0.22}, {'connected_gene': 'GC03M121324', 'score': 0.05}]