PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000379520	[[30369806, 30369928], [30371110, 30371407], [30378715, 30378776], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
ENST00000379519	[[30369806, 30369928], [30371110, 30371407], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
ENST00000261353	[[30369826, 30369928], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
ENST00000490211	[[30369828, 30369928], [30371110, 30371407], [30378680, 30378776], [30379493, 30379653]]	None
ENST00000402003	[[30369872, 30369928], [30371110, 30371171], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
ENST00000402708	[[30370381, 30370957], [30378715, 30378776], [30379493, 30379658], [30381484, 30382417]]	[[30379517, 30379658], [30381484, 30381709]]
ENST00000482474	[[30370426, 30370831], [30371110, 30371200]]	None
ENST00000470120	[[30370817, 30370957], [30379493, 30379658], [30381484, 30381832]]	None
ENST00000492439	[[30370822, 30370957], [30371110, 30371407], [30378715, 30378776], [30379493, 30379658], [30381484, 30381613]]	None
ENST00000495673	[[30379243, 30379658], [30381484, 30382004]]	None
NM_016061	[[30369749, 30369928], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
NM_001127399	[[30369749, 30369928], [30371110, 30371171], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
NM_001127400	[[30369749, 30369928], [30371110, 30371407], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]
NM_001127401	[[30369749, 30369928], [30371110, 30371407], [30378715, 30378776], [30379493, 30379658], [30381484, 30383399]]	[[30379517, 30379658], [30381484, 30381709]]

Promoter

Chrom	Start	End	Description
chr2	30369807	30369847	CAGE_peak_2_at_YPEL5_5end
chr2	30369859	30369880	CAGE_peak_1_at_YPEL5_5end
chr2	30370245	30370287	CAGE_peak_4_at_YPEL5_5end
chr2	30370406	30370421	CAGE_peak_14_at_YPEL5_5end
chr2	30370714	30370740	CAGE_peak_7_at_YPEL5_5end
chr2	30370914	30370926	CAGE_peak_9_at_YPEL5_5end
chr2	30379457	30379468	CAGE_peak_19_at_YPEL5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I030221	30221422	30227674	1.47	[{'connected_gene': 'YPEL5', 'score': 6.03}, {'connected_gene': 'LBH', 'score': 5.09}, {'connected_gene': 'ENSG00000231712', 'score': 0.39}]
chr2	GH02I030145	30145075	30150816	2.52	[{'connected_gene': 'YPEL5', 'score': 558.22}, {'connected_gene': 'LOC101929418', 'score': 550.77}, {'connected_gene': 'LBH', 'score': 1.62}, {'connected_gene': 'PIR52638', 'score': 0.44}]
chr2	GH02I030113	30113274	30115927	0.98	[{'connected_gene': 'YPEL5', 'score': 17.1}, {'connected_gene': 'LOC101929418', 'score': 12.36}, {'connected_gene': 'ENSG00000225943', 'score': 0.28}]
chr2	GH02I030168	30168619	30168712	0.22	[{'connected_gene': 'YPEL5', 'score': 4.29}, {'connected_gene': 'PIR52638', 'score': 0.39}, {'connected_gene': 'GC02P030189', 'score': 0.37}]
chr2	GH02I030230	30230316	30241222	2.66	[{'connected_gene': 'LBH', 'score': 551.9}, {'connected_gene': 'SNORA10B', 'score': 11.65}, {'connected_gene': 'YPEL5', 'score': 2.99}, {'connected_gene': 'GC02P030258', 'score': 0.34}]
chr2	GH02I030407	30407332	30414472	1.22	[{'connected_gene': 'LBH', 'score': 18.5}, {'connected_gene': 'SNORA10B', 'score': 10.45}, {'connected_gene': 'LCLAT1', 'score': 7.3}, {'connected_gene': 'LINC01936', 'score': 5.5}, {'connected_gene': 'YPEL5', 'score': 2.58}, {'connected_gene': 'ENSG00000280154', 'score': 0.77}]
chr2	GH02I030332	30332498	30339970	1.5	[{'connected_gene': 'SNORA10B', 'score': 10.64}, {'connected_gene': 'YPEL5', 'score': 7.34}, {'connected_gene': 'LBH', 'score': 4.65}, {'connected_gene': 'LINC01936', 'score': 0.39}, {'connected_gene': 'LOC102723594', 'score': 0.28}]
chr2	GH02I030264	30264184	30268600	1.33	[{'connected_gene': 'SNORA10B', 'score': 10.77}, {'connected_gene': 'LBH', 'score': 10.52}, {'connected_gene': 'YPEL5', 'score': 9.79}, {'connected_gene': 'GC02P030258', 'score': 0.44}, {'connected_gene': 'LOC102723594', 'score': 0.29}]