PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265857	[[916188, 916437], [925692, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 936071]]	[[916282, 916437], [925692, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 935059]]
ENST00000412734	[[917541, 917964], [925692, 925771], [926205, 926287], [927006, 927156], [930564, 930703]]	[[925696, 925771], [926205, 926287], [927006, 927156], [930564, 930703]]
ENST00000407192	[[923179, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 936073]]	[[925696, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 935059]]
ENST00000441491	[[923660, 924031], [925692, 925771], [926205, 926287], [927006, 927156]]	[[923840, 924031], [925692, 925771], [926205, 926287], [927006, 927156]]
ENST00000426056	[[926669, 926894], [927006, 927156], [930564, 930691]]	[[926695, 926894], [927006, 927156], [930564, 930691]]
ENST00000483469	[[927122, 927156], [930564, 930703], [931914, 932111]]	None
ENST00000464468	[[931936, 932055], [933376, 933608], [934970, 935295]]	None
NM_015949	[[916190, 916437], [925692, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 936071]]	[[916282, 916437], [925692, 925771], [926205, 926287], [927006, 927156], [930564, 930703], [931914, 932055], [933376, 933452], [933535, 933608], [934970, 935059]]

Promoter

Chrom	Start	End	Description
chr7	916183	916204	CAGE_peak_2_at_GET4_5end
chr7	916210	916272	CAGE_peak_1_at_GET4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I000971	971861	980626	2.71	[{'connected_gene': 'COX19', 'score': 559.81}, {'connected_gene': 'CYP2W1', 'score': 45.73}, {'connected_gene': 'LOC105375120', 'score': 22.3}, {'connected_gene': 'GPR146', 'score': 20.58}, {'connected_gene': 'DNAAF5', 'score': 15.14}, {'connected_gene': 'MIR339', 'score': 13.04}, {'connected_gene': 'ADAP1', 'score': 12.7}, {'connected_gene': 'ENSG00000225146', 'score': 11.64}, {'connected_gene': 'C7orf50', 'score': 11.5}, {'connected_gene': 'SUN1', 'score': 11.08}, {'connected_gene': 'LOC101927021', 'score': 9.4}, {'connected_gene': 'GPER1', 'score': 5.21}, {'connected_gene': 'GET4', 'score': 3.46}, {'connected_gene': 'PRKAR1B', 'score': 1.43}]
chr7	GH07I000881	881564	883413	0.84	[{'connected_gene': 'PRKAR1B', 'score': 15.27}, {'connected_gene': 'DNAAF5', 'score': 11.41}, {'connected_gene': 'ENSG00000273151', 'score': 0.77}, {'connected_gene': 'GET4', 'score': 0.44}, {'connected_gene': 'SUN1', 'score': 0.2}]
chr7	GH07I000865	865931	868637	1.24	[{'connected_gene': 'PRKAR1B', 'score': 15.69}, {'connected_gene': 'DNAAF5', 'score': 12.66}, {'connected_gene': 'ENSG00000273151', 'score': 9.37}, {'connected_gene': 'SUN1', 'score': 7.25}, {'connected_gene': 'PIR61037', 'score': 0.44}, {'connected_gene': 'GET4', 'score': 0.44}]
chr7	GH07I000887	887776	889798	0.46	[{'connected_gene': 'PRKAR1B', 'score': 13.85}, {'connected_gene': 'ENSG00000273151', 'score': 10.15}, {'connected_gene': 'SUN1', 'score': 7.7}, {'connected_gene': 'DNAAF5', 'score': 6.78}, {'connected_gene': 'GC07P000891', 'score': 0.77}, {'connected_gene': 'GET4', 'score': 0.39}]
chr7	GH07I000868	868912	870098	0.2	[{'connected_gene': 'DNAAF5', 'score': 12.66}, {'connected_gene': 'PRKAR1B', 'score': 12.36}, {'connected_gene': 'SUN1', 'score': 7.98}, {'connected_gene': 'ENSG00000273151', 'score': 6.53}, {'connected_gene': 'PIR61037', 'score': 0.44}, {'connected_gene': 'GET4', 'score': 0.44}]
chr7	GH07I000879	879812	881218	0.51	[{'connected_gene': 'DNAAF5', 'score': 10.22}, {'connected_gene': 'ENSG00000273151', 'score': 9.46}, {'connected_gene': 'SUN1', 'score': 5.64}, {'connected_gene': 'GET4', 'score': 0.77}]
chr7	GH07I000871	871995	879685	2.54	[{'connected_gene': 'GET4', 'score': 550.77}, {'connected_gene': 'DNAAF5', 'score': 96.81}, {'connected_gene': 'SUN1', 'score': 86.41}, {'connected_gene': 'ENSG00000273230', 'score': 29.66}, {'connected_gene': 'INTS1', 'score': 25.05}, {'connected_gene': 'PSMG3-AS1', 'score': 22.7}, {'connected_gene': 'ENSG00000242474', 'score': 19.0}, {'connected_gene': 'ENSG00000225981', 'score': 14.96}, {'connected_gene': 'PRKAR1B', 'score': 14.53}, {'connected_gene': 'LOC101927021', 'score': 11.31}, {'connected_gene': 'CYP2W1', 'score': 10.84}, {'connected_gene': 'ENSG00000273151', 'score': 10.2}, {'connected_gene': 'PDGFA', 'score': 10.01}, {'connected_gene': 'PIR61037', 'score': 0.39}]
chr7	GH07I000537	537355	540866	1.61	[{'connected_gene': 'PDGFA', 'score': 2.79}, {'connected_gene': 'GET4', 'score': 2.37}, {'connected_gene': 'PRKAR1B', 'score': 1.79}, {'connected_gene': 'DNAAF5', 'score': 1.29}, {'connected_gene': 'GC07P000552', 'score': 0.39}]
chr7	GH07I000511	511667	520913	2.65	[{'connected_gene': 'PDGFA', 'score': 560.77}, {'connected_gene': 'HRAT92', 'score': 49.52}, {'connected_gene': 'GET4', 'score': 2.07}, {'connected_gene': 'GC07P000522', 'score': 0.77}, {'connected_gene': 'ENSG00000234471', 'score': 0.34}]
chr7	GH07I000501	501163	510420	1.32	[{'connected_gene': 'HRAT92', 'score': 28.73}, {'connected_gene': 'PDGFA', 'score': 7.21}, {'connected_gene': 'GET4', 'score': 2.22}, {'connected_gene': 'CYP2W1', 'score': 1.65}, {'connected_gene': 'ENSG00000234471', 'score': 0.44}, {'connected_gene': 'GC07P000522', 'score': 0.39}]
chr7	GH07I000485	485818	485953	0.82	[{'connected_gene': 'HRAT92', 'score': 29.02}, {'connected_gene': 'LOC101927000', 'score': 11.94}, {'connected_gene': 'PDGFA', 'score': 4.14}, {'connected_gene': 'GET4', 'score': 1.69}, {'connected_gene': 'ENSG00000234471', 'score': 0.39}, {'connected_gene': 'LOC442497', 'score': 0.14}]
chr7	GH07I000892	892295	894026	0.6	[{'connected_gene': 'GC07P000891', 'score': 550.77}, {'connected_gene': 'PRKAR1B', 'score': 13.98}, {'connected_gene': 'ADAP1', 'score': 12.85}, {'connected_gene': 'ENSG00000225146', 'score': 11.16}, {'connected_gene': 'GPR146', 'score': 11.14}, {'connected_gene': 'C7orf50', 'score': 11.1}, {'connected_gene': 'DNAAF5', 'score': 8.82}, {'connected_gene': 'SUN1', 'score': 7.64}, {'connected_gene': 'GET4', 'score': 0.37}, {'connected_gene': 'PIR34198', 'score': 0.26}]
chr7	GH07I000861	861185	862098	0.79	[{'connected_gene': 'PIR61037', 'score': 550.77}, {'connected_gene': 'ENSG00000273151', 'score': 9.33}, {'connected_gene': 'DNAAF5', 'score': 7.55}, {'connected_gene': 'SUN1', 'score': 7.32}, {'connected_gene': 'GET4', 'score': 0.39}]
chr7	GH07I000968	968483	970185	0.2	[{'connected_gene': 'PIR60263', 'score': 550.77}, {'connected_gene': 'CYP2W1', 'score': 27.62}, {'connected_gene': 'ENSG00000225146', 'score': 11.63}, {'connected_gene': 'GPR146', 'score': 11.59}, {'connected_gene': 'C7orf50', 'score': 11.51}, {'connected_gene': 'COX19', 'score': 8.78}, {'connected_gene': 'GET4', 'score': 5.38}, {'connected_gene': 'LOC105375120', 'score': 4.73}]
chr7	GH07I000883	883524	883673	0.58	[{'connected_gene': 'ENSG00000273151', 'score': 0.77}, {'connected_gene': 'GET4', 'score': 0.44}, {'connected_gene': 'SUN1', 'score': 0.2}]
chr7	GH07I000884	884204	884353	0.51	[{'connected_gene': 'ENSG00000273151', 'score': 0.77}, {'connected_gene': 'GET4', 'score': 0.44}, {'connected_gene': 'SUN1', 'score': 0.2}]
chr7	GH07I000885	885084	885233	0.4	[{'connected_gene': 'ENSG00000273151', 'score': 550.77}, {'connected_gene': 'SUN1', 'score': 5.63}, {'connected_gene': 'GET4', 'score': 0.44}]