PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000541412	[[10723147, 10723474], [10724788, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10731352]]	[[10724846, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10730899]]
ENST00000229563	[[10723207, 10723474], [10724802, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10731362]]	[[10724846, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10730899]]
ENST00000466421	[[10723341, 10723474], [10726139, 10726241], [10728872, 10728960], [10730847, 10730996]]	None
ENST00000467415	[[10723357, 10723474], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10731362]]	None
ENST00000495549	[[10724654, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960]]	None
NM_016462	[[10723147, 10723474], [10724802, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10731362]]	[[10724846, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10730899]]
NM_001165258	[[10723147, 10723474], [10724788, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10731362]]	[[10724846, 10724866], [10725193, 10725270], [10726139, 10726241], [10728872, 10728960], [10730847, 10730899]]

Promoter

Chrom	Start	End	Description
chr6	10723228	10723239	CAGE_peak_3_at_TMEM14C_5end
chr6	10723295	10723390	CAGE_peak_1_at_TMEM14C_5end
chr6	10723392	10723434	CAGE_peak_2_at_TMEM14C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I010440	10440802	10442709	1.21	[{'connected_gene': 'TFAP2A', 'score': 6.48}, {'connected_gene': 'TMEM14C', 'score': 3.0}, {'connected_gene': 'TMEM14B', 'score': 2.29}, {'connected_gene': 'PAK1IP1', 'score': 2.18}, {'connected_gene': 'GCNT2', 'score': 1.36}, {'connected_gene': 'MIR5689', 'score': 0.77}, {'connected_gene': 'MIR5689HG', 'score': 0.44}, {'connected_gene': 'MRPL48P1', 'score': 0.37}]
chr6	GH06I010398	10398426	10421363	3.44	[{'connected_gene': 'TFAP2A', 'score': 558.88}, {'connected_gene': 'TFAP2A-AS1', 'score': 550.77}, {'connected_gene': 'RNA5SP203', 'score': 32.23}, {'connected_gene': 'ERVFRD-1', 'score': 9.71}, {'connected_gene': 'PAK1IP1', 'score': 5.12}, {'connected_gene': 'TMEM14C', 'score': 4.17}, {'connected_gene': 'TMEM14B', 'score': 3.71}, {'connected_gene': 'C6orf52', 'score': 2.03}]
chr6	GH06I010642	10642801	10643800	1.1	[{'connected_gene': 'TMEM14C', 'score': 6.13}, {'connected_gene': 'PIR56839', 'score': 0.44}, {'connected_gene': 'LOC105374924', 'score': 0.37}]
chr6	GH06I010719	10719401	10726130	2.31	[{'connected_gene': 'TMEM14C', 'score': 556.63}, {'connected_gene': 'RNA5SP203', 'score': 13.02}, {'connected_gene': 'ENSG00000272097', 'score': 12.71}, {'connected_gene': 'ERVFRD-1', 'score': 9.74}, {'connected_gene': 'PAK1IP1', 'score': 5.17}, {'connected_gene': 'C6orf52', 'score': 4.76}]
chr6	GH06I010693	10693439	10696164	2.1	[{'connected_gene': 'C6orf52', 'score': 565.71}, {'connected_gene': 'PAK1IP1', 'score': 557.95}, {'connected_gene': 'RNA5SP203', 'score': 22.46}, {'connected_gene': 'TMEM14C', 'score': 0.31}]
chr6	GH06I010425	10425435	10432419	1.82	[{'connected_gene': 'GCNT2', 'score': 10.28}, {'connected_gene': 'TMEM14C', 'score': 9.75}, {'connected_gene': 'GCM2', 'score': 9.33}, {'connected_gene': 'SYCP2L', 'score': 9.33}, {'connected_gene': 'ENSG00000235051', 'score': 9.33}, {'connected_gene': 'ENSG00000228478', 'score': 0.77}, {'connected_gene': 'MIR5689HG', 'score': 0.44}, {'connected_gene': 'LINC00518', 'score': 0.44}]
chr6	GH06I010750	10750644	10752278	0.72	[{'connected_gene': 'RNA5SP203', 'score': 550.77}, {'connected_gene': 'TMEM14C', 'score': 10.0}, {'connected_gene': 'TMEM14B', 'score': 0.77}, {'connected_gene': 'ENSG00000272162', 'score': 0.77}]
chr6	GH06I011611	11611749	11616977	1	[{'connected_gene': 'TMEM170B', 'score': 13.05}, {'connected_gene': 'TMEM14C', 'score': 4.29}, {'connected_gene': 'ENSG00000271897', 'score': 0.44}, {'connected_gene': 'ENSG00000277473', 'score': 0.31}]
chr6	GH06I010732	10732633	10736325	1.09	[{'connected_gene': 'ENSG00000272097', 'score': 12.46}, {'connected_gene': 'C6orf52', 'score': 11.24}, {'connected_gene': 'PAK1IP1', 'score': 11.23}, {'connected_gene': 'GC06M010746', 'score': 0.39}, {'connected_gene': 'TMEM14C', 'score': 0.39}]