PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000419358	[[51696708, 51696892], [51708286, 51708578], [51718428, 51718483]]	[[51708320, 51708578], [51718428, 51718483]]
ENST00000489026	[[51705190, 51705304], [51718428, 51718650], [51733421, 51733590], [51737739, 51738034]]	None
ENST00000457573	[[51705221, 51705304], [51706356, 51706408], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738338]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
ENST00000341333	[[51705247, 51705304], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
ENST00000412249	[[51705253, 51705304], [51706225, 51706317], [51708286, 51708578], [51718428, 51718589]]	[[51708320, 51708578], [51718428, 51718589]]
ENST00000425781	[[51705260, 51705304], [51706356, 51706408], [51708286, 51708578], [51718428, 51718623]]	[[51708320, 51708578], [51718428, 51718623]]
ENST00000415259	[[51705270, 51706317], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738299]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
ENST00000395057	[[51705289, 51705563], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738337]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
ENST00000416589	[[51705311, 51705347], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738333]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
ENST00000493444	[[51705642, 51705719], [51718428, 51718650], [51733421, 51733590], [51737739, 51737825]]	None
ENST00000457927	[[51705843, 51706317], [51708286, 51708578], [51718428, 51718650], [51733421, 51733588]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733588]]
ENST00000444233	[[51705910, 51706099], [51708286, 51708578], [51718428, 51718650], [51733421, 51733591]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733591]]
ENST00000483429	[[51708492, 51708578], [51715357, 51715446], [51718428, 51718575]]	None
ENST00000463857	[[51715476, 51718650], [51733421, 51733590], [51737739, 51738333]]	None
NR_024012	[[51705190, 51705304], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	None
NM_001243727	[[51705190, 51705304], [51708286, 51708578], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51733421, 51733590], [51737739, 51738032]]
NM_015926	[[51705190, 51705304], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
NM_001129884	[[51705190, 51705304], [51706356, 51706408], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
NM_001278195	[[51705190, 51705304], [51706225, 51706317], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
NM_001243726	[[51705289, 51705347], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
NM_001243725	[[51705289, 51705563], [51708286, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	[[51708320, 51708578], [51718428, 51718650], [51733421, 51733590], [51737739, 51738032]]
NR_103463	[[51705642, 51705688], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	None
NR_103462	[[51705642, 51705719], [51718428, 51718650], [51733421, 51733590], [51737739, 51738339]]	None

Promoter

Chrom	Start	End	Description
chr3	51705222	51705281	CAGE_peak_1_at_TEX264_5end
chr3	51705887	51705911	CAGE_peak_3_at_TEX264_5end
chr3	51715738	51715765	CAGE_peak_2_at_TEX264_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I051383	51383446	51392956	2.28	[{'connected_gene': 'MANF', 'score': 550.77}, {'connected_gene': 'RBM15B', 'score': 550.77}, {'connected_gene': 'PIR60056', 'score': 550.77}, {'connected_gene': 'DCAF1', 'score': 39.36}, {'connected_gene': 'RRP9', 'score': 17.48}, {'connected_gene': 'RAD54L2', 'score': 13.43}, {'connected_gene': 'TEX264', 'score': 9.71}, {'connected_gene': 'GRM2', 'score': 5.92}, {'connected_gene': 'CACNA2D2', 'score': 5.51}, {'connected_gene': 'GPR62', 'score': 4.66}, {'connected_gene': 'PCBP4', 'score': 4.5}, {'connected_gene': 'PIR52841', 'score': 0.77}, {'connected_gene': 'GC03P051392', 'score': 0.77}, {'connected_gene': 'PIR58843', 'score': 0.77}, {'connected_gene': 'PIR33911', 'score': 0.77}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I052443	52443801	52445400	1.56	[{'connected_gene': 'SEMA3G', 'score': 550.77}, {'connected_gene': 'LOC105377091', 'score': 550.77}, {'connected_gene': 'NISCH', 'score': 12.29}, {'connected_gene': 'RAD54L2', 'score': 11.36}, {'connected_gene': 'PPM1M', 'score': 10.98}, {'connected_gene': 'PBRM1', 'score': 8.14}, {'connected_gene': 'TEX264', 'score': 4.22}]
chr3	GH03I050806	50806090	50807659	0.46	[{'connected_gene': 'HEMK1', 'score': 9.63}, {'connected_gene': 'TEX264', 'score': 9.54}, {'connected_gene': 'GC03M050811', 'score': 0.44}, {'connected_gene': 'ZNF652P1', 'score': 0.37}, {'connected_gene': 'DOCK3', 'score': 0.12}]
chr3	GH03I051668	51668805	51672915	2.02	[{'connected_gene': 'TEX264', 'score': 570.41}, {'connected_gene': 'DCAF1', 'score': 25.81}, {'connected_gene': 'RRP9', 'score': 11.15}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.06}, {'connected_gene': 'RBM15B', 'score': 10.07}, {'connected_gene': 'RAD54L2', 'score': 10.01}, {'connected_gene': 'DOCK3', 'score': 5.68}, {'connected_gene': 'GRM2', 'score': 5.04}, {'connected_gene': 'PIR41340', 'score': 0.77}, {'connected_gene': 'RNA5SP132', 'score': 0.34}]
chr3	GH03I051684	51684429	51688032	1.2	[{'connected_gene': 'TEX264', 'score': 17.43}, {'connected_gene': 'DCAF1', 'score': 14.53}, {'connected_gene': 'RNU6ATAC29P', 'score': 10.83}, {'connected_gene': 'IQCF6', 'score': 10.19}, {'connected_gene': 'RPL29', 'score': 7.21}, {'connected_gene': 'RNA5SP132', 'score': 0.44}, {'connected_gene': 'PIR41340', 'score': 0.37}]
chr3	GH03I051339	51339062	51341982	1.23	[{'connected_gene': 'TEX264', 'score': 17.74}, {'connected_gene': 'PIR61668', 'score': 0.44}, {'connected_gene': 'MANF', 'score': 0.26}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051343	51343687	51345373	0.57	[{'connected_gene': 'TEX264', 'score': 11.18}, {'connected_gene': 'PIR61668', 'score': 0.39}, {'connected_gene': 'MANF', 'score': 0.26}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051559	51559257	51560194	0.43	[{'connected_gene': 'TEX264', 'score': 14.27}, {'connected_gene': 'RPL29', 'score': 4.13}, {'connected_gene': 'GC03P051541', 'score': 0.37}, {'connected_gene': 'RAD54L2', 'score': 0.34}, {'connected_gene': 'GC03M051578', 'score': 0.28}]
chr3	GH03I051282	51282676	51283714	0.51	[{'connected_gene': 'TEX264', 'score': 7.99}, {'connected_gene': 'PCBP4', 'score': 4.68}, {'connected_gene': 'GC03M051294', 'score': 0.39}, {'connected_gene': 'ST13P14', 'score': 0.05}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051621	51621201	51622617	0.98	[{'connected_gene': 'TEX264', 'score': 13.77}, {'connected_gene': 'GRM2', 'score': 5.74}, {'connected_gene': 'GC03P051614', 'score': 0.44}, {'connected_gene': 'GC03P051629', 'score': 0.44}, {'connected_gene': 'RAD54L2', 'score': 0.18}]
chr3	GH03I051548	51548607	51551334	0.67	[{'connected_gene': 'TEX264', 'score': 5.62}, {'connected_gene': 'GC03P051541', 'score': 0.44}, {'connected_gene': 'RAD54L2', 'score': 0.39}, {'connected_gene': 'GC03M051578', 'score': 0.25}]
chr3	GH03I051567	51567648	51568495	0.66	[{'connected_gene': 'TEX264', 'score': 17.99}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.76}, {'connected_gene': 'RAD54L2', 'score': 0.31}, {'connected_gene': 'GC03P051541', 'score': 0.31}, {'connected_gene': 'GC03M051578', 'score': 0.31}]
chr3	GH03I050926	50926600	50927352	0.38	[{'connected_gene': 'TEX264', 'score': 9.54}, {'connected_gene': 'ST13P14', 'score': 0.25}, {'connected_gene': 'DOCK3', 'score': 0.07}, {'connected_gene': 'GC03M051294', 'score': 0.05}]
chr3	GH03I051678	51678935	51682991	1.26	[{'connected_gene': 'IQCF6', 'score': 12.73}, {'connected_gene': 'DCAF1', 'score': 11.49}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.14}, {'connected_gene': 'GPR62', 'score': 2.15}, {'connected_gene': 'IQCF1', 'score': 1.66}, {'connected_gene': 'IQCF5', 'score': 1.64}, {'connected_gene': 'IQCF2', 'score': 1.62}, {'connected_gene': 'RNA5SP132', 'score': 0.39}, {'connected_gene': 'PIR41340', 'score': 0.39}, {'connected_gene': 'TEX264', 'score': 0.37}]
chr3	GH03I050816	50816508	50819379	0.52	[{'connected_gene': 'RAD54L2', 'score': 15.18}, {'connected_gene': 'TEX264', 'score': 9.54}, {'connected_gene': 'HEMK1', 'score': 8.37}, {'connected_gene': 'LINC02019', 'score': 8.18}, {'connected_gene': 'GC03M050811', 'score': 0.77}, {'connected_gene': 'ST13P14', 'score': 0.22}, {'connected_gene': 'DOCK3', 'score': 0.11}]
chr3	GH03I051537	51537601	51540609	1.57	[{'connected_gene': 'RAD54L2', 'score': 562.19}, {'connected_gene': 'NISCH', 'score': 21.43}, {'connected_gene': 'DCAF1', 'score': 13.75}, {'connected_gene': 'RNU6ATAC29P', 'score': 11.62}, {'connected_gene': 'TEX264', 'score': 6.01}, {'connected_gene': 'GC03P051541', 'score': 0.77}]
chr3	GH03I051024	51024088	51026199	1.21	[{'connected_gene': 'RAD54L2', 'score': 19.36}, {'connected_gene': 'RBM5', 'score': 16.8}, {'connected_gene': 'DOCK3', 'score': 10.23}, {'connected_gene': 'SEMA3F-AS1', 'score': 10.22}, {'connected_gene': 'TEX264', 'score': 9.82}, {'connected_gene': 'DCAF1', 'score': 2.75}, {'connected_gene': 'RBM15B', 'score': 1.21}, {'connected_gene': 'ST13P14', 'score': 0.11}, {'connected_gene': 'GC03M051294', 'score': 0.06}]
chr3	GH03I050978	50978902	50980099	0.81	[{'connected_gene': 'DOCK3', 'score': 10.15}, {'connected_gene': 'HEMK1', 'score': 9.1}, {'connected_gene': 'TEX264', 'score': 6.82}, {'connected_gene': 'ST13P14', 'score': 0.15}, {'connected_gene': 'GC03M051294', 'score': 0.06}]
chr3	GH03I051674	51674812	51675974	0.2	[{'connected_gene': 'RNU6ATAC29P', 'score': 11.15}, {'connected_gene': 'PIR41340', 'score': 0.44}, {'connected_gene': 'TEX264', 'score': 0.39}, {'connected_gene': 'RNA5SP132', 'score': 0.37}]
chr3	GH03I051694	51694504	51694569	0.26	[{'connected_gene': 'RNA5SP132', 'score': 550.77}, {'connected_gene': 'TEX264', 'score': 16.01}, {'connected_gene': 'RNU6ATAC29P', 'score': 10.35}, {'connected_gene': 'PIR41340', 'score': 0.31}]
chr3	GH03I051394	51394928	51396997	0.52	[{'connected_gene': 'PIR51350', 'score': 550.77}, {'connected_gene': 'TEX264', 'score': 18.66}, {'connected_gene': 'RAD54L2', 'score': 14.41}, {'connected_gene': 'GRM2', 'score': 5.63}, {'connected_gene': 'RBM15B', 'score': 0.77}, {'connected_gene': 'GC03P051392', 'score': 0.77}, {'connected_gene': 'PIR52841', 'score': 0.77}, {'connected_gene': 'DCAF1', 'score': 0.14}]