PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000346248	[[125767183, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125851839, 125851970]]	[[125769664, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
ENST00000421115	[[125780597, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125852984, 125853206]]	[[125780597, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
ENST00000462406	[[125805528, 125806240], [125852984, 125853098]]	None
ENST00000435907	[[125767185, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806241]]	[[125769664, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
ENST00000476765	[[125780597, 125780928], [125798030, 125798135]]	None
NM_015892	[[125767181, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125851839, 125851940]]	[[125769664, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
NM_001270764	[[125767181, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125852984, 125853123]]	[[125769664, 125769855], [125771848, 125771996], [125780771, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
NM_014863	[[125779168, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125851839, 125851940]]	[[125780597, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]
NM_001270765	[[125779168, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125806240], [125852984, 125853123]]	[[125780597, 125780928], [125798030, 125798187], [125801816, 125801963], [125804095, 125804435], [125805182, 125805728]]

Promoter

Chrom	Start	End	Description
chr10	125805382	125805387	CAGE_peak_11_at_CHST15_5end
chr10	125851877	125851901	CAGE_peak_4_at_CHST15_5end
chr10	125851906	125851944	CAGE_peak_1_at_CHST15_5end
chr10	125851961	125851968	CAGE_peak_7_at_CHST15_5end
chr10	125852191	125852216	CAGE_peak_5_at_CHST15_5end
chr10	125852243	125852266	CAGE_peak_10_at_CHST15_5end
chr10	125853048	125853095	CAGE_peak_2_at_CHST15_5end
chr10	125853099	125853128	CAGE_peak_3_at_CHST15_5end
chr10	125853200	125853208	CAGE_peak_6_at_CHST15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I124645	124645444	124656791	1.69	[{'connected_gene': 'FAM53B', 'score': 23.66}, {'connected_gene': 'CHST15', 'score': 21.67}, {'connected_gene': 'EEF1AKMT2', 'score': 13.37}, {'connected_gene': 'LHPP', 'score': 5.41}, {'connected_gene': 'ZRANB1', 'score': 5.32}, {'connected_gene': 'GC10M124645', 'score': 0.34}, {'connected_gene': 'PIR48648', 'score': 0.34}, {'connected_gene': 'FAM53B-AS1', 'score': 0.23}, {'connected_gene': 'ENSG00000258539', 'score': 0.11}]
chr10	GH10I124635	124635728	124643335	1.56	[{'connected_gene': 'FAM53B', 'score': 27.8}, {'connected_gene': 'CHST15', 'score': 11.26}, {'connected_gene': 'ABRAXAS2', 'score': 10.64}, {'connected_gene': 'ZRANB1', 'score': 9.08}, {'connected_gene': 'EEF1AKMT2', 'score': 8.36}, {'connected_gene': 'GC10M124645', 'score': 0.39}, {'connected_gene': 'PIR48648', 'score': 0.39}, {'connected_gene': 'FAM53B-AS1', 'score': 0.21}, {'connected_gene': 'ENSG00000258539', 'score': 0.1}]
chr10	GH10I124534	124534202	124536751	1.07	[{'connected_gene': 'FAM53B', 'score': 17.51}, {'connected_gene': 'ABRAXAS2', 'score': 10.84}, {'connected_gene': 'EEF1AKMT2', 'score': 7.13}, {'connected_gene': 'LHPP', 'score': 6.94}, {'connected_gene': 'CHST15', 'score': 1.95}, {'connected_gene': 'GC10P124539', 'score': 0.77}, {'connected_gene': 'PIR39838', 'score': 0.77}, {'connected_gene': 'GC10P124510', 'score': 0.31}]
chr10	GH10I124000	124000710	124001200	0.38	[{'connected_gene': 'BUB3', 'score': 13.71}, {'connected_gene': 'CHST15', 'score': 11.53}, {'connected_gene': 'CPXM2', 'score': 4.95}, {'connected_gene': 'ENSG00000232334', 'score': 0.77}, {'connected_gene': 'YBX2P1', 'score': 0.44}]
chr10	GH10I124103	124103835	124104833	0.38	[{'connected_gene': 'BUB3', 'score': 13.71}, {'connected_gene': 'CHST15', 'score': 10.95}, {'connected_gene': 'LOC105378536', 'score': 0.25}]
chr10	GH10I123993	123993613	123998800	1.66	[{'connected_gene': 'CHST15', 'score': 79.75}, {'connected_gene': 'BUB3', 'score': 12.04}, {'connected_gene': 'EEF1AKMT2', 'score': 10.27}, {'connected_gene': 'ABRAXAS2', 'score': 10.04}, {'connected_gene': 'FAM53B', 'score': 7.44}, {'connected_gene': 'ENSG00000234677', 'score': 5.95}, {'connected_gene': 'YBX2P1', 'score': 0.77}, {'connected_gene': 'ENSG00000232334', 'score': 0.44}]
chr10	GH10I124045	124045048	124046656	0.52	[{'connected_gene': 'CHST15', 'score': 11.48}, {'connected_gene': 'BUB3', 'score': 10.44}, {'connected_gene': 'PIR49608', 'score': 0.37}, {'connected_gene': 'GC10M124074', 'score': 0.28}]
chr10	GH10I124332	124332400	124332843	0.69	[{'connected_gene': 'CHST15', 'score': 1.14}, {'connected_gene': 'OAT', 'score': 0.17}, {'connected_gene': 'LOC105378536', 'score': 0.09}]
chr10	GH10I124319	124319796	124320924	0.49	[{'connected_gene': 'CHST15', 'score': 14.96}, {'connected_gene': 'OAT', 'score': 0.15}, {'connected_gene': 'LOC105378536', 'score': 0.1}]
chr10	GH10I124284	124284929	124287121	1.43	[{'connected_gene': 'CHST15', 'score': 11.96}, {'connected_gene': 'OAT', 'score': 0.12}, {'connected_gene': 'LOC105378536', 'score': 0.12}]
chr10	GH10I124289	124289342	124291999	1.49	[{'connected_gene': 'CHST15', 'score': 1.79}, {'connected_gene': 'OAT', 'score': 0.13}, {'connected_gene': 'LOC105378536', 'score': 0.12}]
chr10	GH10I124091	124091401	124095682	2.41	[{'connected_gene': 'CHST15', 'score': 569.4}, {'connected_gene': 'EEF1AKMT2', 'score': 16.05}, {'connected_gene': 'GC10M124074', 'score': 0.44}]
chr10	GH10I124403	124403191	124404330	0.91	[{'connected_gene': 'CHST15', 'score': 10.59}, {'connected_gene': 'NKX1-2', 'score': 10.57}, {'connected_gene': 'OAT', 'score': 0.37}, {'connected_gene': 'LOC105378536', 'score': 0.07}]
chr10	GH10I124339	124339120	124342484	1.33	[{'connected_gene': 'CHST15', 'score': 15.75}, {'connected_gene': 'GPR26', 'score': 6.2}, {'connected_gene': 'FAM53B', 'score': 1.23}, {'connected_gene': 'OAT', 'score': 0.18}, {'connected_gene': 'LOC105378536', 'score': 0.09}]
chr10	GH10I124342	124342492	124342641	0.2	[{'connected_gene': 'CHST15', 'score': 10.43}, {'connected_gene': 'GPR26', 'score': 5.1}, {'connected_gene': 'OAT', 'score': 0.18}, {'connected_gene': 'LOC105378536', 'score': 0.08}]
chr10	GH10I124323	124323256	124323419	0.87	[{'connected_gene': 'CHST15', 'score': 11.3}, {'connected_gene': 'ABRAXAS2', 'score': 1.98}, {'connected_gene': 'OAT', 'score': 0.15}, {'connected_gene': 'LOC105378536', 'score': 0.09}]
chr10	GH10I124271	124271761	124271993	0.32	[{'connected_gene': 'CHST15', 'score': 1.77}, {'connected_gene': 'LOC105378536', 'score': 0.13}, {'connected_gene': 'OAT', 'score': 0.11}]
chr10	GH10I124266	124266374	124266713	0.41	[{'connected_gene': 'CHST15', 'score': 12.63}, {'connected_gene': 'LOC105378536', 'score': 0.13}, {'connected_gene': 'OAT', 'score': 0.1}]
chr10	GH10I124280	124280032	124280300	0.28	[{'connected_gene': 'CHST15', 'score': 11.86}, {'connected_gene': 'LOC105378536', 'score': 0.13}, {'connected_gene': 'OAT', 'score': 0.12}]
chr10	GH10I124096	124096901	124098328	0.43	[{'connected_gene': 'CHST15', 'score': 9.31}, {'connected_gene': 'LOC105378536', 'score': 0.23}]
chr10	GH10I124100	124100621	124100949	0.24	[{'connected_gene': 'CHST15', 'score': 8.86}, {'connected_gene': 'LOC105378536', 'score': 0.23}]
chr10	GH10I124099	124099697	124099957	0.52	[{'connected_gene': 'CHST15', 'score': 6.92}, {'connected_gene': 'LOC105378536', 'score': 0.23}]
chr10	GH10I124119	124119202	124120599	0.2	[{'connected_gene': 'CHST15', 'score': 0.31}, {'connected_gene': 'LOC105378536', 'score': 0.29}]
chr10	GH10I124105	124105045	124107664	1.2	[{'connected_gene': 'CHST15', 'score': 14.55}, {'connected_gene': 'LOC105378536', 'score': 0.26}]
chr10	GH10I123429	123429471	123430559	0.8	[{'connected_gene': 'CHST15', 'score': 4.95}, {'connected_gene': 'ENSG00000225152', 'score': 0.77}, {'connected_gene': 'LOC105378531', 'score': 0.18}, {'connected_gene': 'GC10M123502', 'score': 0.18}]
chr10	GH10I124047	124047901	124050294	1.06	[{'connected_gene': 'CHST15', 'score': 19.47}, {'connected_gene': 'PIR49608', 'score': 0.37}, {'connected_gene': 'GC10M124074', 'score': 0.28}]
chr10	GH10I124082	124082165	124083013	0.38	[{'connected_gene': 'CHST15', 'score': 6.72}, {'connected_gene': 'GC10M124074', 'score': 0.77}, {'connected_gene': 'PIR49608', 'score': 0.23}]
chr10	GH10I124035	124035002	124037200	1.7	[{'connected_gene': 'CHST15', 'score': 58.33}, {'connected_gene': 'PIR49608', 'score': 0.44}, {'connected_gene': 'GC10M124074', 'score': 0.25}]
chr10	GH10I124032	124032886	124034800	1.14	[{'connected_gene': 'CHST15', 'score': 16.98}, {'connected_gene': 'PIR49608', 'score': 0.77}, {'connected_gene': 'GC10M124074', 'score': 0.23}]
chr10	GH10I124042	124042277	124044909	1.32	[{'connected_gene': 'CHST15', 'score': 20.16}, {'connected_gene': 'PIR49608', 'score': 0.39}, {'connected_gene': 'GC10M124074', 'score': 0.26}]
chr10	GH10I124040	124039785	124039834	0.58	[{'connected_gene': 'CHST15', 'score': 11.71}, {'connected_gene': 'PIR49608', 'score': 0.44}, {'connected_gene': 'GC10M124074', 'score': 0.25}]
chr10	GH10I124026	124026605	124027880	0.4	[{'connected_gene': 'CHST15', 'score': 11.88}, {'connected_gene': 'PIR49608', 'score': 0.77}, {'connected_gene': 'ENSG00000232334', 'score': 0.34}]
chr10	GH10I124054	124054001	124054274	0.86	[{'connected_gene': 'CHST15', 'score': 12.26}, {'connected_gene': 'PIR49608', 'score': 0.34}, {'connected_gene': 'GC10M124074', 'score': 0.29}]
chr10	GH10I124013	124013474	124014639	0.31	[{'connected_gene': 'CHST15', 'score': 16.01}, {'connected_gene': 'ENSG00000232334', 'score': 0.44}, {'connected_gene': 'PIR49608', 'score': 0.37}]
chr10	GH10I124039	124039685	124039760	0.58	[{'connected_gene': 'CHST15', 'score': 11.71}, {'connected_gene': 'PIR49608', 'score': 0.44}, {'connected_gene': 'GC10M124074', 'score': 0.25}]
chr10	GH10I124041	124040201	124040869	0.88	[{'connected_gene': 'CHST15', 'score': 46.44}, {'connected_gene': 'PIR49608', 'score': 0.39}, {'connected_gene': 'GC10M124074', 'score': 0.26}]
chr10	GH10I124074	124074163	124076433	0.94	[{'connected_gene': 'CHST15', 'score': 6.93}, {'connected_gene': 'GC10M124074', 'score': 0.44}, {'connected_gene': 'PIR49608', 'score': 0.26}]
chr10	GH10I124008	124008299	124011134	0.72	[{'connected_gene': 'CHST15', 'score': 25.9}, {'connected_gene': 'ENSG00000232334', 'score': 0.77}, {'connected_gene': 'PIR49608', 'score': 0.34}]
chr10	GH10I124079	124079347	124080810	0.63	[{'connected_gene': 'CHST15', 'score': 6.2}, {'connected_gene': 'GC10M124074', 'score': 0.77}, {'connected_gene': 'PIR49608', 'score': 0.25}]
chr10	GH10I124062	124062168	124067999	1.26	[{'connected_gene': 'CHST15', 'score': 19.9}, {'connected_gene': 'GC10M124074', 'score': 0.37}, {'connected_gene': 'PIR49608', 'score': 0.29}]
chr10	GH10I124072	124072001	124072400	0.63	[{'connected_gene': 'CHST15', 'score': 12.42}, {'connected_gene': 'GC10M124074', 'score': 0.39}, {'connected_gene': 'PIR49608', 'score': 0.26}]
chr10	GH10I124037	124037308	124038676	0.4	[{'connected_gene': 'CHST15', 'score': 12.16}, {'connected_gene': 'PIR49608', 'score': 0.44}, {'connected_gene': 'GC10M124074', 'score': 0.25}]
chr10	GH10I124068	124068889	124070116	0.4	[{'connected_gene': 'CHST15', 'score': 19.11}, {'connected_gene': 'GC10M124074', 'score': 0.37}, {'connected_gene': 'PIR49608', 'score': 0.28}]
chr10	GH10I124089	124089601	124089800	0.4	[{'connected_gene': 'CHST15', 'score': 6.69}, {'connected_gene': 'GC10M124074', 'score': 0.77}]
chr10	GH10I124088	124088145	124089000	1.09	[{'connected_gene': 'CHST15', 'score': 9.64}, {'connected_gene': 'GC10M124074', 'score': 0.77}]
chr10	GH10I124388	124388524	124389800	1.04	[{'connected_gene': 'OAT', 'score': 17.98}, {'connected_gene': 'CHST15', 'score': 10.73}, {'connected_gene': 'LOC105378536', 'score': 0.07}]
chr10	GH10I124354	124354267	124355761	1.15	[{'connected_gene': 'EEF1AKMT2', 'score': 10.28}, {'connected_gene': 'CHST15', 'score': 6.0}, {'connected_gene': 'OAT', 'score': 5.78}, {'connected_gene': 'LOC105378536', 'score': 0.08}]
chr10	GH10I124077	124077142	124078940	0.57	[{'connected_gene': 'EEF1AKMT2', 'score': 16.06}, {'connected_gene': 'CHST15', 'score': 6.87}, {'connected_gene': 'GC10M124074', 'score': 0.44}, {'connected_gene': 'PIR49608', 'score': 0.25}]
chr10	GH10I124307	124305652	124306166	0.99	[{'connected_gene': 'EEF1AKMT2', 'score': 11.54}, {'connected_gene': 'CTBP2', 'score': 10.81}, {'connected_gene': 'ABRAXAS2', 'score': 1.66}, {'connected_gene': 'CHST15', 'score': 1.36}, {'connected_gene': 'OAT', 'score': 0.14}, {'connected_gene': 'LOC105378536', 'score': 0.1}]
chr10	GH10I124424	124424954	124426391	0.74	[{'connected_gene': 'NKX1-2', 'score': 12.39}, {'connected_gene': 'CHST15', 'score': 9.76}, {'connected_gene': 'FAM53B', 'score': 9.11}, {'connected_gene': 'OAT', 'score': 0.44}, {'connected_gene': 'OATP1', 'score': 0.37}]
chr10	GH10I124427	124427377	124430433	0.85	[{'connected_gene': 'NKX1-2', 'score': 13.05}, {'connected_gene': 'CHST15', 'score': 9.76}, {'connected_gene': 'FAM53B', 'score': 9.11}, {'connected_gene': 'OAT', 'score': 0.44}, {'connected_gene': 'OATP1', 'score': 0.37}]
chr10	GH10I124406	124406765	124408457	0.31	[{'connected_gene': 'NKX1-2', 'score': 11.09}, {'connected_gene': 'CHST15', 'score': 10.59}, {'connected_gene': 'FAM53B', 'score': 10.11}, {'connected_gene': 'OAT', 'score': 7.58}, {'connected_gene': 'LOC105378536', 'score': 0.07}]
chr10	GH10I124305	124305195	124305453	0.66	[{'connected_gene': 'ABRAXAS2', 'score': 2.12}, {'connected_gene': 'CHST15', 'score': 1.6}, {'connected_gene': 'OAT', 'score': 0.14}, {'connected_gene': 'LOC105378536', 'score': 0.1}]
chr10	GH10I123963	123963892	123964048	0.25	[{'connected_gene': 'CPXM2', 'score': 12.03}, {'connected_gene': 'YBX2P1', 'score': 0.31}, {'connected_gene': 'CHST15', 'score': 0.13}]
chr10	GH10I124144	124144201	124145999	0.2	[{'connected_gene': 'LOC105378536', 'score': 0.44}, {'connected_gene': 'CHST15', 'score': 0.23}]
chr10	GH10I124138	124138400	124138601	0.2	[{'connected_gene': 'LOC105378536', 'score': 0.39}, {'connected_gene': 'CHST15', 'score': 0.26}]
chr10	GH10I124125	124125800	124126000	0.2	[{'connected_gene': 'LOC105378536', 'score': 0.31}, {'connected_gene': 'CHST15', 'score': 0.29}]
chr10	GH10I123972	123972585	123972734	0.52	[{'connected_gene': 'YBX2P1', 'score': 0.37}, {'connected_gene': 'CPXM2', 'score': 0.29}, {'connected_gene': 'CHST15', 'score': 0.13}]
chr10	GH10I123967	123967725	123967954	0.64	[{'connected_gene': 'YBX2P1', 'score': 0.34}, {'connected_gene': 'CPXM2', 'score': 0.31}, {'connected_gene': 'CHST15', 'score': 0.13}]
chr10	GH10I124005	124004725	124004874	0.88	[{'connected_gene': 'ENSG00000232334', 'score': 550.77}, {'connected_gene': 'CHST15', 'score': 11.54}, {'connected_gene': 'YBX2P1', 'score': 0.39}]
chr10	GH10I124019	124019830	124022097	0.49	[{'connected_gene': 'PIR49608', 'score': 0.44}, {'connected_gene': 'ENSG00000232334', 'score': 0.37}, {'connected_gene': 'CHST15', 'score': 0.19}]
chr10	GH10I124030	124030611	124032827	0.31	[{'connected_gene': 'PIR49608', 'score': 550.77}, {'connected_gene': 'CHST15', 'score': 11.29}, {'connected_gene': 'GC10M124074', 'score': 0.23}]
chr10	GH10I124004	124004951	124005733	0.83	[{'connected_gene': 'ENSG00000232334', 'score': 550.77}, {'connected_gene': 'CHST15', 'score': 11.54}, {'connected_gene': 'PIR49608', 'score': 0.31}]
chr10	GH10I124083	124083740	124085200	0.89	[{'connected_gene': 'GC10M124074', 'score': 550.77}, {'connected_gene': 'NKX1-2', 'score': 9.05}, {'connected_gene': 'CHST15', 'score': 7.75}, {'connected_gene': 'PIR49608', 'score': 0.23}]
chr10	GH10I124085	124085462	124086600	0.71	[{'connected_gene': 'GC10M124074', 'score': 550.77}, {'connected_gene': 'NKX1-2', 'score': 9.05}, {'connected_gene': 'CHST15', 'score': 0.44}]