PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000606893	[[110501343, 110501383], [110501586, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110551536]]	None
ENST00000368932	[[110501343, 110501383], [110501586, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110553420]]	[[110501647, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110551334]]
ENST00000307731	[[110501623, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110553418]]	[[110501647, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110551334]]
ENST00000368930	[[110501623, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110575087, 110575478]]	[[110501647, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110575087, 110575145]]
ENST00000453107	[[110520177, 110520240], [110522760, 110522890], [110528708, 110528792], [110530286, 110530315]]	None
ENST00000431461	[[110522807, 110522890], [110528708, 110528792], [110530286, 110530519]]	None
ENST00000445340	[[110545498, 110545635], [110552654, 110552874]]	None
NM_015891	[[110501623, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110553423]]	[[110501647, 110501836], [110514384, 110514471], [110522760, 110522890], [110528708, 110528792], [110530286, 110530426], [110531909, 110532006], [110533335, 110533475], [110534288, 110534363], [110536488, 110536534], [110538904, 110539006], [110540566, 110540682], [110540938, 110541072], [110547369, 110547446], [110550034, 110550179], [110551156, 110551334]]

Promoter

Chrom	Start	End	Description
chr6	110501376	110501412	CAGE_peak_4_at_CDC40_5end
chr6	110501592	110501614	CAGE_peak_2_at_CDC40_5end
chr6	110501621	110501639	CAGE_peak_1_at_CDC40_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I110135	110135387	110135748	0.26	[{'connected_gene': 'WASF1', 'score': 21.67}, {'connected_gene': 'METTL24', 'score': 3.59}, {'connected_gene': 'CDC40', 'score': 3.02}, {'connected_gene': 'PIR45173', 'score': 0.44}, {'connected_gene': 'GC06P110094', 'score': 0.26}]
chr6	GH06I110178	110178400	110182583	2.34	[{'connected_gene': 'WASF1', 'score': 568.91}, {'connected_gene': 'CDC40', 'score': 555.04}, {'connected_gene': 'ZBTB24', 'score': 24.5}, {'connected_gene': 'CD164', 'score': 11.12}, {'connected_gene': 'SMPD2', 'score': 10.9}, {'connected_gene': 'CNN2P9', 'score': 10.12}, {'connected_gene': 'FIG4', 'score': 1.54}]
chr6	GH06I110183	110183401	110183600	0.38	[{'connected_gene': 'WASF1', 'score': 17.56}, {'connected_gene': 'CDC40', 'score': 0.77}]
chr6	GH06I110211	110211898	110212047	0.52	[{'connected_gene': 'WASF1', 'score': 0.34}, {'connected_gene': 'LOC105377937', 'score': 0.31}, {'connected_gene': 'CDC40', 'score': 0.29}]
chr6	GH06I110295	110295966	110296137	0.42	[{'connected_gene': 'DDO', 'score': 9.04}, {'connected_gene': 'WASF1', 'score': 5.91}, {'connected_gene': 'CDC40', 'score': 4.22}, {'connected_gene': 'METTL24', 'score': 1.4}, {'connected_gene': 'GC06M110279', 'score': 0.39}, {'connected_gene': 'LOC102724586', 'score': 0.28}]
chr6	GH06I110981	110981000	110983657	2.07	[{'connected_gene': 'RPF2', 'score': 559.7}, {'connected_gene': 'CDC40', 'score': 12.46}, {'connected_gene': 'GTF3C6', 'score': 12.07}, {'connected_gene': 'RNU6-957P', 'score': 9.44}, {'connected_gene': 'GC06M111009', 'score': 0.31}]
chr6	GH06I109771	109771208	109773820	1.34	[{'connected_gene': 'SMPD2', 'score': 14.04}, {'connected_gene': 'ZBTB24', 'score': 10.8}, {'connected_gene': 'CEP57L1', 'score': 10.73}, {'connected_gene': 'FIG4', 'score': 10.11}, {'connected_gene': 'ENSG00000260273', 'score': 9.97}, {'connected_gene': 'CCDC162P', 'score': 8.49}, {'connected_gene': 'MICAL1', 'score': 3.23}, {'connected_gene': 'CDC40', 'score': 1.78}, {'connected_gene': 'AK9', 'score': 1.48}, {'connected_gene': 'CD164', 'score': 1.25}, {'connected_gene': 'GC06M109753', 'score': 0.37}, {'connected_gene': 'ENSG00000232311', 'score': 0.23}]
chr6	GH06I110873	110873253	110879857	2.58	[{'connected_gene': 'AMD1', 'score': 558.54}, {'connected_gene': 'MFSD4B', 'score': 41.23}, {'connected_gene': 'ENSG00000220506', 'score': 31.34}, {'connected_gene': 'BRD7P4', 'score': 19.45}, {'connected_gene': 'RPF2', 'score': 19.14}, {'connected_gene': 'CDK19', 'score': 19.02}, {'connected_gene': 'CNN2P9', 'score': 18.83}, {'connected_gene': 'FCF1P5', 'score': 18.46}, {'connected_gene': 'GTF3C6', 'score': 11.48}, {'connected_gene': 'RNU6-957P', 'score': 11.06}, {'connected_gene': 'ENSG00000272356', 'score': 10.09}, {'connected_gene': 'CDC40', 'score': 9.86}, {'connected_gene': 'SLC16A10', 'score': 7.15}, {'connected_gene': 'ENSG00000271607', 'score': 0.39}, {'connected_gene': 'GC06P110895', 'score': 0.37}]
chr6	GH06I110813	110813256	110817357	2.12	[{'connected_gene': 'CDK19', 'score': 560.97}, {'connected_gene': 'AMD1', 'score': 558.45}, {'connected_gene': 'MFSD4B', 'score': 32.59}, {'connected_gene': 'ENSG00000220506', 'score': 30.95}, {'connected_gene': 'FCF1P5', 'score': 18.8}, {'connected_gene': 'RPF2', 'score': 15.76}, {'connected_gene': 'CNN2P9', 'score': 10.35}, {'connected_gene': 'BRD7P4', 'score': 10.06}, {'connected_gene': 'CDC40', 'score': 9.86}]
chr6	GH06I109379	109379218	109385489	2.33	[{'connected_gene': 'ENSG00000260273', 'score': 565.43}, {'connected_gene': 'CD164', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 52.31}, {'connected_gene': 'SMPD2', 'score': 32.79}, {'connected_gene': 'MICAL1', 'score': 13.55}, {'connected_gene': 'AK9', 'score': 12.44}, {'connected_gene': 'PPIL6', 'score': 11.82}, {'connected_gene': 'ENSG00000233908', 'score': 10.45}, {'connected_gene': 'PTCHD3P3', 'score': 10.45}, {'connected_gene': 'CCDC162P', 'score': 10.37}, {'connected_gene': 'LOC105377935', 'score': 10.11}, {'connected_gene': 'CDC40', 'score': 9.86}, {'connected_gene': 'ENSG00000271730', 'score': 9.69}, {'connected_gene': 'FIG4', 'score': 5.38}, {'connected_gene': 'LOC101927538', 'score': 0.29}]
chr6	GH06I110285	110285064	110285221	0.5	[{'connected_gene': 'GC06M110279', 'score': 550.77}, {'connected_gene': 'CDC40', 'score': 16.69}, {'connected_gene': 'WASF1', 'score': 15.28}, {'connected_gene': 'LOC102724586', 'score': 0.23}, {'connected_gene': 'METTL24', 'score': 0.19}]