PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261438	[[38665816, 38666082], [38682207, 38682303], [38690205, 38690692], [38691349, 38691500], [38696366, 38696527], [38698702, 38702663]]	[[38682246, 38682303], [38690205, 38690692], [38691349, 38691500], [38696366, 38696527], [38698702, 38698884]]
ENST00000514033	[[38665817, 38666082], [38682207, 38682303], [38690205, 38690692], [38691349, 38692372]]	[[38682246, 38682303], [38690205, 38690692], [38691349, 38691504]]
ENST00000482150	[[38665964, 38666082], [38682207, 38682606]]	None
NM_016531	[[38665789, 38666082], [38682207, 38682303], [38690205, 38690692], [38691349, 38691500], [38696366, 38696527], [38698702, 38703129]]	[[38682246, 38682303], [38690205, 38690692], [38691349, 38691500], [38696366, 38696527], [38698702, 38698884]]

Promoter

Chrom	Start	End	Description
chr4	38665659	38665670	CAGE_peak_6_at_KLF3_5end
chr4	38665703	38665713	CAGE_peak_5_at_KLF3_5end
chr4	38665753	38665757	CAGE_peak_7_at_KLF3_5end
chr4	38665769	38665801	CAGE_peak_2_at_KLF3_5end
chr4	38665810	38665827	CAGE_peak_1_at_KLF3_5end
chr4	38665866	38665878	CAGE_peak_4_at_KLF3_5end
chr4	38665883	38665922	CAGE_peak_3_at_KLF3_5end
chr4	38665935	38665944	CAGE_peak_9_at_KLF3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I038687	38687620	38687769	0.51	[{'connected_gene': 'TLR10', 'score': 10.41}, {'connected_gene': 'TLR1', 'score': 10.03}, {'connected_gene': 'FAM114A1', 'score': 10.02}, {'connected_gene': 'TLR6', 'score': 10.02}, {'connected_gene': 'MIR574', 'score': 10.01}, {'connected_gene': 'KLF3-AS1', 'score': 0.34}, {'connected_gene': 'KLF3', 'score': 0.34}, {'connected_gene': 'LOC105374413', 'score': 0.22}]
chr4	GH04I038688	38688574	38689151	0.31	[{'connected_gene': 'TLR10', 'score': 10.42}, {'connected_gene': 'TLR1', 'score': 10.03}, {'connected_gene': 'TLR6', 'score': 10.03}, {'connected_gene': 'FAM114A1', 'score': 10.02}, {'connected_gene': 'MIR574', 'score': 10.02}, {'connected_gene': 'KLF3-AS1', 'score': 0.34}, {'connected_gene': 'KLF3', 'score': 0.34}, {'connected_gene': 'LOC105374413', 'score': 0.22}]
chr4	GH04I038684	38684562	38685944	0.38	[{'connected_gene': 'KLF3-AS1', 'score': 28.21}, {'connected_gene': 'TLR10', 'score': 10.41}, {'connected_gene': 'TLR1', 'score': 10.02}, {'connected_gene': 'TLR6', 'score': 10.02}, {'connected_gene': 'FAM114A1', 'score': 10.01}, {'connected_gene': 'MIR574', 'score': 10.01}, {'connected_gene': 'ENSG00000271958', 'score': 9.02}, {'connected_gene': 'KLF3', 'score': 0.34}, {'connected_gene': 'LOC105374413', 'score': 0.22}]
chr4	GH04I038686	38686094	38687331	0.38	[{'connected_gene': 'KLF3-AS1', 'score': 28.21}, {'connected_gene': 'TLR10', 'score': 10.41}, {'connected_gene': 'TLR1', 'score': 10.02}, {'connected_gene': 'TLR6', 'score': 10.02}, {'connected_gene': 'FAM114A1', 'score': 10.01}, {'connected_gene': 'MIR574', 'score': 10.01}, {'connected_gene': 'KLF3', 'score': 0.34}, {'connected_gene': 'LOC105374413', 'score': 0.22}]
chr4	GH04I038680	38680392	38682935	0.51	[{'connected_gene': 'KLF3-AS1', 'score': 11.79}, {'connected_gene': 'TLR1', 'score': 9.92}, {'connected_gene': 'TLR6', 'score': 9.92}, {'connected_gene': 'FAM114A1', 'score': 9.91}, {'connected_gene': 'MIR574', 'score': 9.91}, {'connected_gene': 'ENSG00000271958', 'score': 8.14}, {'connected_gene': 'KLF3', 'score': 0.37}, {'connected_gene': 'LOC105374413', 'score': 0.21}]
chr4	GH04I038692	38692964	38695329	0.38	[{'connected_gene': 'KLF3-AS1', 'score': 12.0}, {'connected_gene': 'MIR574', 'score': 10.13}, {'connected_gene': 'FAM114A1', 'score': 10.13}, {'connected_gene': 'KLF3', 'score': 0.31}, {'connected_gene': 'LOC105374413', 'score': 0.25}]
chr4	GH04I038696	38696184	38696205	0.42	[{'connected_gene': 'KLF3-AS1', 'score': 0.29}, {'connected_gene': 'KLF3', 'score': 0.29}, {'connected_gene': 'LOC105374413', 'score': 0.25}]
chr4	GH04I038685	38684400	38684549	0.58	[{'connected_gene': 'KLF3-AS1', 'score': 0.37}, {'connected_gene': 'KLF3', 'score': 0.34}, {'connected_gene': 'LOC105374413', 'score': 0.22}]
chr4	GH04I038676	38676746	38679335	1.02	[{'connected_gene': 'KLF3-AS1', 'score': 28.13}, {'connected_gene': 'ENSG00000271958', 'score': 10.14}, {'connected_gene': 'KLF3', 'score': 0.39}, {'connected_gene': 'LOC105374413', 'score': 0.2}]
chr4	GH04I038648	38648862	38649438	0.2	[{'connected_gene': 'KLF3-AS1', 'score': 26.58}, {'connected_gene': 'GC04M038346', 'score': 0.37}, {'connected_gene': 'KLF3', 'score': 0.37}]
chr4	GH04I038654	38654028	38655821	0.6	[{'connected_gene': 'KLF3-AS1', 'score': 28.4}, {'connected_gene': 'KLF3', 'score': 0.44}, {'connected_gene': 'GC04M038346', 'score': 0.34}]
chr4	GH04I038658	38658147	38659901	0.2	[{'connected_gene': 'KLF3-AS1', 'score': 0.44}, {'connected_gene': 'KLF3', 'score': 0.44}, {'connected_gene': 'GC04M038346', 'score': 0.31}]
chr4	GH04I038759	38759358	38764506	1.31	[{'connected_gene': 'TLR1', 'score': 29.96}, {'connected_gene': 'TLR6', 'score': 21.24}, {'connected_gene': 'TLR10', 'score': 14.88}, {'connected_gene': 'FAM114A1', 'score': 12.16}, {'connected_gene': 'MIR574', 'score': 12.16}, {'connected_gene': 'ENSG00000271958', 'score': 4.41}, {'connected_gene': 'KLF3', 'score': 3.37}, {'connected_gene': 'RNA5SP158', 'score': 0.77}]
chr4	GH04I038785	38785084	38787178	1.27	[{'connected_gene': 'TLR1', 'score': 45.35}, {'connected_gene': 'TLR6', 'score': 37.53}, {'connected_gene': 'MIR574', 'score': 11.34}, {'connected_gene': 'FAM114A1', 'score': 11.34}, {'connected_gene': 'KLF3', 'score': 6.99}, {'connected_gene': 'TLR10', 'score': 0.77}]
chr4	GH04I038691	38691079	38692402	0.58	[{'connected_gene': 'MIR574', 'score': 10.13}, {'connected_gene': 'FAM114A1', 'score': 10.13}, {'connected_gene': 'ENSG00000271958', 'score': 9.57}, {'connected_gene': 'KLF3-AS1', 'score': 8.5}, {'connected_gene': 'KLF3', 'score': 0.31}, {'connected_gene': 'LOC105374413', 'score': 0.23}]
chr4	GH04I039456	39456666	39460401	2.28	[{'connected_gene': 'RPL9', 'score': 701.05}, {'connected_gene': 'LIAS', 'score': 550.77}, {'connected_gene': 'PDS5A', 'score': 41.5}, {'connected_gene': 'WDR19', 'score': 21.59}, {'connected_gene': 'ENSG00000250568', 'score': 20.15}, {'connected_gene': 'RFC1', 'score': 17.8}, {'connected_gene': 'KLF3-AS1', 'score': 12.11}, {'connected_gene': 'FAM114A1', 'score': 12.06}, {'connected_gene': 'UGDH-AS1', 'score': 10.0}, {'connected_gene': 'KLF3', 'score': 9.83}, {'connected_gene': 'LOC401127', 'score': 5.85}, {'connected_gene': 'ENSG00000238797', 'score': 0.37}]
chr4	GH04I038322	38322358	38323659	0.98	[{'connected_gene': 'PGM2', 'score': 10.38}, {'connected_gene': 'KLF3', 'score': 9.85}, {'connected_gene': 'LINC02513', 'score': 0.44}, {'connected_gene': 'LOC105374409', 'score': 0.26}]
chr4	GH04I038661	38661400	38676314	2.61	[{'connected_gene': 'KLF3', 'score': 565.01}, {'connected_gene': 'KLF3-AS1', 'score': 29.14}, {'connected_gene': 'ENSG00000271958', 'score': 13.56}, {'connected_gene': 'RFC1', 'score': 11.52}, {'connected_gene': 'HNRNPRP3', 'score': 10.47}, {'connected_gene': 'PGM2', 'score': 10.36}, {'connected_gene': 'KLHL5', 'score': 6.14}, {'connected_gene': 'TLR6', 'score': 3.31}, {'connected_gene': 'TLR1', 'score': 3.15}, {'connected_gene': 'LOC105374413', 'score': 0.18}]
chr4	GH04I039040	39040539	39048600	2.68	[{'connected_gene': 'KLHL5', 'score': 561.36}, {'connected_gene': 'ENSG00000249685', 'score': 17.23}, {'connected_gene': 'TMEM156', 'score': 6.28}, {'connected_gene': 'TLR1', 'score': 2.79}, {'connected_gene': 'TLR6', 'score': 2.52}, {'connected_gene': 'KLF3', 'score': 2.1}, {'connected_gene': 'GC04P038912', 'score': 0.12}]
chr4	GH04I038948	38948071	38950044	1.2	[{'connected_gene': 'KLHL5', 'score': 10.82}, {'connected_gene': 'KLB', 'score': 10.29}, {'connected_gene': 'RNU6-887P', 'score': 10.29}, {'connected_gene': 'KLF3', 'score': 4.75}, {'connected_gene': 'GC04P038912', 'score': 0.28}, {'connected_gene': 'TMEM156', 'score': 0.18}]
chr4	GH04I038855	38855317	38859275	2.52	[{'connected_gene': 'TLR6', 'score': 596.44}, {'connected_gene': 'TLR1', 'score': 578.57}, {'connected_gene': 'FAM114A1', 'score': 9.34}, {'connected_gene': 'KLF3', 'score': 8.63}, {'connected_gene': 'KLHL5', 'score': 1.36}]
chr4	GH04I038528	38528802	38530599	1.44	[{'connected_gene': 'TLR6', 'score': 22.31}, {'connected_gene': 'TLR1', 'score': 19.72}, {'connected_gene': 'RFC1', 'score': 16.32}, {'connected_gene': 'WDR19', 'score': 15.08}, {'connected_gene': 'KLF3', 'score': 6.74}, {'connected_gene': 'LINC01258', 'score': 0.44}, {'connected_gene': 'LINC02278', 'score': 0.29}, {'connected_gene': 'GC04M038346', 'score': 0.15}]
chr4	GH04I038309	38309889	38311603	1.45	[{'connected_gene': 'TLR6', 'score': 10.06}, {'connected_gene': 'KLF3', 'score': 2.04}, {'connected_gene': 'LINC02513', 'score': 0.37}, {'connected_gene': 'LOC105374409', 'score': 0.29}]
chr4	GH04I038582	38582560	38583789	0.69	[{'connected_gene': 'ENSG00000271958', 'score': 11.71}, {'connected_gene': 'KLF3-AS1', 'score': 10.66}, {'connected_gene': 'KLF3', 'score': 10.66}, {'connected_gene': 'LINC02278', 'score': 0.37}, {'connected_gene': 'LOC102723415', 'score': 0.31}, {'connected_gene': 'GC04M038346', 'score': 0.25}]
chr4	GH04I038619	38619822	38622736	1.2	[{'connected_gene': 'ENSG00000271958', 'score': 572.54}, {'connected_gene': 'KLF3-AS1', 'score': 11.3}, {'connected_gene': 'KLF3', 'score': 11.3}, {'connected_gene': 'GC04M038346', 'score': 0.44}]