PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr15	34517194	34517246	CAGE_peak_1_at_TMEM85_5end
chr15	34517251	34517276	CAGE_peak_2_at_TMEM85_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I034317	34316852	34320744	2.15	[{'connected_gene': 'SLC12A6', 'score': 568.43}, {'connected_gene': 'NOP10', 'score': 60.71}, {'connected_gene': 'GOLGA8A', 'score': 13.04}, {'connected_gene': 'AQR', 'score': 12.82}, {'connected_gene': 'ENSG00000259287', 'score': 11.81}, {'connected_gene': 'LOC101929988', 'score': 10.85}, {'connected_gene': 'EMC4', 'score': 8.82}, {'connected_gene': 'ENSG00000207091', 'score': 0.77}]
chr15	GH15I034055	34055217	34057854	0.58	[{'connected_gene': 'AVEN', 'score': 12.37}, {'connected_gene': 'KATNBL1', 'score': 11.74}, {'connected_gene': 'EMC4', 'score': 10.94}, {'connected_gene': 'GC15M034069', 'score': 0.39}, {'connected_gene': 'ENSG00000259505', 'score': 0.2}, {'connected_gene': 'CHRM5', 'score': 0.17}]
chr15	GH15I034303	34303082	34307325	0.54	[{'connected_gene': 'NOP10', 'score': 30.71}, {'connected_gene': 'SLC12A6', 'score': 30.2}, {'connected_gene': 'NUTM1', 'score': 11.88}, {'connected_gene': 'KATNBL1', 'score': 10.7}, {'connected_gene': 'EMC4', 'score': 10.64}, {'connected_gene': 'GC15P034315', 'score': 0.44}, {'connected_gene': 'ENSG00000259468', 'score': 0.25}]
chr15	GH15I034246	34246018	34247411	0.38	[{'connected_gene': 'NOP10', 'score': 51.16}, {'connected_gene': 'SLC12A6', 'score': 11.89}, {'connected_gene': 'NUTM1', 'score': 11.88}, {'connected_gene': 'LPCAT4', 'score': 11.67}, {'connected_gene': 'KATNBL1', 'score': 11.64}, {'connected_gene': 'GOLGA8B', 'score': 4.39}, {'connected_gene': 'ENSG00000259468', 'score': 0.44}, {'connected_gene': 'EMC4', 'score': 0.34}]
chr15	GH15I034238	34238054	34242346	0.89	[{'connected_gene': 'NOP10', 'score': 37.71}, {'connected_gene': 'KATNBL1', 'score': 11.66}, {'connected_gene': 'SLC12A6', 'score': 11.5}, {'connected_gene': 'NUTM1', 'score': 11.5}, {'connected_gene': 'EMC4', 'score': 0.37}, {'connected_gene': 'ENSG00000259468', 'score': 0.37}]
chr15	GH15I034217	34217538	34218329	0.65	[{'connected_gene': 'NOP10', 'score': 12.84}, {'connected_gene': 'KATNBL1', 'score': 7.57}, {'connected_gene': 'EMC4', 'score': 0.44}]
chr15	GH15I034213	34213720	34215072	0.43	[{'connected_gene': 'NOP10', 'score': 32.47}, {'connected_gene': 'KATNBL1', 'score': 7.63}, {'connected_gene': 'EMC4', 'score': 0.39}]
chr15	GH15I034223	34223673	34226135	2.08	[{'connected_gene': 'EMC4', 'score': 550.77}, {'connected_gene': 'NOP10', 'score': 46.59}, {'connected_gene': 'AQR', 'score': 29.31}, {'connected_gene': 'HNRNPLP2', 'score': 24.12}, {'connected_gene': 'NUTM1', 'score': 21.32}, {'connected_gene': 'SLC12A6', 'score': 11.03}, {'connected_gene': 'KATNBL1', 'score': 4.81}]
chr15	GH15I034435	34435911	34438351	1.42	[{'connected_gene': 'GOLGA8A', 'score': 575.17}, {'connected_gene': 'ACTG1P15', 'score': 9.71}, {'connected_gene': 'FSCN1P1', 'score': 5.2}, {'connected_gene': 'EMC4', 'score': 5.0}, {'connected_gene': 'ENSG00000279092', 'score': 0.37}]
chr15	GH15I034100	34100408	34103037	2.05	[{'connected_gene': 'PGBD4', 'score': 557.14}, {'connected_gene': 'EMC7', 'score': 550.77}, {'connected_gene': 'AVEN', 'score': 20.26}, {'connected_gene': 'KATNBL1', 'score': 11.05}, {'connected_gene': 'HNRNPLP2', 'score': 11.04}, {'connected_gene': 'EMC4', 'score': 10.73}, {'connected_gene': 'RPL32P2', 'score': 0.37}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000267750	[[34517199, 34517401], [34517736, 34517851], [34519893, 34520047], [34520629, 34520790], [34521953, 34522357]]	[[34517315, 34517401], [34517736, 34517851], [34519893, 34520047], [34520629, 34520790], [34521953, 34521989]]
ENST00000249209	[[34517213, 34517401], [34517736, 34517851], [34519893, 34520047], [34521953, 34522348]]	[[34517315, 34517401], [34517736, 34517851], [34519893, 34520047], [34521953, 34522048]]
ENST00000560911	[[34517218, 34517401], [34517764, 34517851], [34519893, 34520047], [34520629, 34520784]]	[[34517315, 34517401], [34517764, 34517851], [34519893, 34519939]]
ENST00000557941	[[34517219, 34517401], [34517736, 34518755]]	None
ENST00000561372	[[34517225, 34517401], [34517715, 34517851], [34519893, 34520047]]	[[34517315, 34517401], [34517715, 34517851], [34519893, 34520047]]
ENST00000559078	[[34517236, 34517401], [34517736, 34517851], [34519893, 34519995], [34521166, 34521383]]	[[34517315, 34517401], [34517736, 34517851], [34519893, 34519995], [34521166, 34521172]]
ENST00000558205	[[34517237, 34517401], [34517736, 34517859], [34519893, 34520047], [34520629, 34520790], [34521953, 34522357]]	[[34517315, 34517401], [34517736, 34517859], [34519893, 34519939]]
ENST00000557879	[[34517238, 34517401], [34517736, 34517859], [34520319, 34521042]]	[[34517315, 34517401], [34517736, 34517859], [34520319, 34520329]]
ENST00000558102	[[34517240, 34517401], [34519893, 34520047], [34521953, 34522181]]	[[34517315, 34517401], [34519893, 34519939]]
ENST00000559421	[[34517266, 34517401], [34517736, 34517851], [34521953, 34522200]]	[[34517315, 34517401], [34517736, 34517851], [34521953, 34521989]]
ENST00000558810	[[34517362, 34517401], [34517736, 34517851], [34519893, 34520391]]	None
ENST00000561246	[[34518712, 34520025], [34521644, 34522350]]	None
ENST00000560947	[[34519895, 34520047], [34520637, 34520790], [34521953, 34522357]]	[[34519895, 34520047], [34520637, 34520780]]
NM_001286420	[[34517197, 34517401], [34517736, 34517851], [34519893, 34520047], [34521953, 34522366]]	[[34517315, 34517401], [34517736, 34517851], [34519893, 34520047], [34521953, 34522048]]
NM_016454	[[34517197, 34517401], [34517736, 34517851], [34519893, 34520047], [34520629, 34520790], [34521953, 34522366]]	[[34517315, 34517401], [34517736, 34517851], [34519893, 34520047], [34520629, 34520790], [34521953, 34521989]]