PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000534692	[[66586465, 66586696], [66596974, 66597120], [66599985, 66600154]]	[[66586618, 66586696], [66596974, 66596998]]
ENST00000264001	[[66586469, 66586696], [66592092, 66592251], [66597024, 66597120], [66599788, 66599975]]	[[66586618, 66586696], [66592092, 66592251], [66597024, 66597120], [66599788, 66599914]]
ENST00000362093	[[66586471, 66586696], [66599788, 66599975]]	[[66586618, 66586696], [66599788, 66599914]]
ENST00000351137	[[66586471, 66586696], [66597024, 66597120], [66599788, 66599975]]	[[66586618, 66586696], [66597024, 66597120], [66599788, 66599914]]
ENST00000345436	[[66586471, 66586696], [66592092, 66592251], [66599788, 66599975]]	[[66586618, 66586696], [66592092, 66592251], [66599788, 66599914]]
ENST00000526149	[[66586475, 66586696], [66592092, 66592435]]	None
ENST00000417030	[[66586484, 66586696], [66592092, 66592251], [66597024, 66597120], [66599985, 66600146]]	[[66586618, 66586696], [66592092, 66592251], [66597024, 66597120], [66599985, 66599994]]
ENST00000563092	[[66587297, 66587382], [66597024, 66597120], [66599788, 66599972]]	None
NM_016326	[[66586465, 66586696], [66599788, 66600190]]	[[66586618, 66586696], [66599788, 66599914]]
NM_181640	[[66586465, 66586696], [66597024, 66597120], [66599788, 66600190]]	[[66586618, 66586696], [66597024, 66597120], [66599788, 66599914]]
NM_181641	[[66586465, 66586696], [66592092, 66592251], [66599788, 66600190]]	[[66586618, 66586696], [66592092, 66592251], [66599788, 66599914]]
NM_001040138	[[66586465, 66586696], [66592092, 66592251], [66597024, 66597120], [66599985, 66600190]]	[[66586618, 66586696], [66592092, 66592251], [66597024, 66597120], [66599985, 66599994]]
NM_016951	[[66586465, 66586696], [66592092, 66592251], [66597024, 66597120], [66599788, 66600190]]	[[66586618, 66586696], [66592092, 66592251], [66597024, 66597120], [66599788, 66599914]]

Promoter

Chrom	Start	End	Description
chr16	66586461	66586567	CAGE_peak_1_at_CKLF-CMTM1_5end,CAGE_peak_1_at_CKLF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I066515	66515002	66527445	1.83	[{'connected_gene': 'TK2', 'score': 31.23}, {'connected_gene': 'CKLF', 'score': 29.03}, {'connected_gene': 'ENSG00000260465', 'score': 25.76}, {'connected_gene': 'ZDHHC1', 'score': 25.27}, {'connected_gene': 'NAE1', 'score': 24.02}, {'connected_gene': 'BEAN1', 'score': 22.31}, {'connected_gene': 'CKLF-CMTM1', 'score': 13.28}, {'connected_gene': 'E2F4', 'score': 11.73}, {'connected_gene': 'CMTM2', 'score': 11.48}, {'connected_gene': 'PLEKHG4', 'score': 10.68}, {'connected_gene': 'FBXL8', 'score': 9.89}, {'connected_gene': 'TRADD', 'score': 9.83}, {'connected_gene': 'LINC00920', 'score': 6.3}, {'connected_gene': 'CMTM1', 'score': 1.32}, {'connected_gene': 'ENSG00000260851', 'score': 0.77}, {'connected_gene': 'ENSG00000261519', 'score': 0.31}]
chr16	GH16I066502	66502155	66503373	1.4	[{'connected_gene': 'TK2', 'score': 28.71}, {'connected_gene': 'E2F4', 'score': 13.44}, {'connected_gene': 'CKLF', 'score': 11.89}, {'connected_gene': 'CKLF-CMTM1', 'score': 11.89}, {'connected_gene': 'ENSG00000260465', 'score': 11.31}, {'connected_gene': 'CES3', 'score': 1.37}, {'connected_gene': 'ENSG00000260755', 'score': 0.44}, {'connected_gene': 'ENSG00000260851', 'score': 0.39}, {'connected_gene': 'GC16P066491', 'score': 0.39}]
chr16	GH16I066547	66547754	66554347	2.3	[{'connected_gene': 'TK2', 'score': 579.97}, {'connected_gene': 'ENSG00000261519', 'score': 550.77}, {'connected_gene': 'CKLF-CMTM1', 'score': 550.77}, {'connected_gene': 'PIR51465', 'score': 550.77}, {'connected_gene': 'PIR54425', 'score': 550.77}, {'connected_gene': 'CKLF', 'score': 550.77}, {'connected_gene': 'ENSG00000275745', 'score': 550.77}, {'connected_gene': 'NAE1', 'score': 45.15}, {'connected_gene': 'ZDHHC1', 'score': 40.42}, {'connected_gene': 'BEAN1', 'score': 25.09}, {'connected_gene': 'PLEKHG4', 'score': 21.49}, {'connected_gene': 'ENSG00000260465', 'score': 19.69}, {'connected_gene': 'BEAN1-AS1', 'score': 18.47}, {'connected_gene': 'FBXL8', 'score': 18.33}, {'connected_gene': 'KIAA0895L', 'score': 14.35}, {'connected_gene': 'CMTM2', 'score': 11.56}, {'connected_gene': 'TRADD', 'score': 10.08}, {'connected_gene': 'PIR36312', 'score': 0.77}, {'connected_gene': 'GC16M066555', 'score': 0.77}]
chr16	GH16I066984	66984819	66985072	0.53	[{'connected_gene': 'FBXL8', 'score': 2.7}, {'connected_gene': 'CES4A', 'score': 2.55}, {'connected_gene': 'CMTM3', 'score': 1.84}, {'connected_gene': 'CBFB', 'score': 1.82}, {'connected_gene': 'TRADD', 'score': 1.71}, {'connected_gene': 'CKLF', 'score': 1.34}, {'connected_gene': 'CES3', 'score': 0.34}]
chr16	GH16I066227	66227773	66228136	0.22	[{'connected_gene': 'CKLF', 'score': 2.28}, {'connected_gene': 'GC16M066229', 'score': 0.39}, {'connected_gene': 'LOC105371316', 'score': 0.16}]
chr16	GH16I066558	66558228	66560483	0.31	[{'connected_gene': 'BEAN1', 'score': 33.57}, {'connected_gene': 'TK2', 'score': 14.97}, {'connected_gene': 'CKLF', 'score': 0.44}, {'connected_gene': 'GC16M066555', 'score': 0.44}, {'connected_gene': 'CKLF-CMTM1', 'score': 0.44}, {'connected_gene': 'PIR36312', 'score': 0.44}, {'connected_gene': 'ENSG00000277978', 'score': 0.44}]
chr16	GH16I066560	66560978	66563631	0.8	[{'connected_gene': 'BEAN1', 'score': 34.06}, {'connected_gene': 'TK2', 'score': 23.81}, {'connected_gene': 'ENSG00000277978', 'score': 0.77}, {'connected_gene': 'CKLF', 'score': 0.44}, {'connected_gene': 'GC16M066555', 'score': 0.44}, {'connected_gene': 'CKLF-CMTM1', 'score': 0.44}, {'connected_gene': 'PIR36312', 'score': 0.44}]
chr16	GH16I066585	66585542	66588400	0.76	[{'connected_gene': 'BEAN1', 'score': 19.9}, {'connected_gene': 'TK2', 'score': 13.95}, {'connected_gene': 'CKLF', 'score': 13.79}, {'connected_gene': 'LINC00920', 'score': 6.15}, {'connected_gene': 'CMTM2', 'score': 0.44}, {'connected_gene': 'ENSG00000260650', 'score': 0.44}, {'connected_gene': 'CMTM3', 'score': 0.37}]
chr16	GH16I066538	66538392	66540930	0.83	[{'connected_gene': 'BEAN1', 'score': 34.58}, {'connected_gene': 'TK2', 'score': 12.88}, {'connected_gene': 'CMTM2', 'score': 11.34}, {'connected_gene': 'CKLF', 'score': 8.7}, {'connected_gene': 'ENSG00000261519', 'score': 0.44}, {'connected_gene': 'ENSG00000260851', 'score': 0.34}]
chr16	GH16I066536	66536440	66537879	0.2	[{'connected_gene': 'BEAN1', 'score': 10.31}, {'connected_gene': 'CKLF', 'score': 8.59}, {'connected_gene': 'ENSG00000261519', 'score': 0.39}, {'connected_gene': 'ENSG00000260851', 'score': 0.37}, {'connected_gene': 'TK2', 'score': 0.37}]
chr16	GH16I066459	66459938	66460047	0.38	[{'connected_gene': 'BEAN1', 'score': 12.04}, {'connected_gene': 'CKLF', 'score': 10.38}, {'connected_gene': 'CKLF-CMTM1', 'score': 10.38}, {'connected_gene': 'TK2', 'score': 10.38}, {'connected_gene': 'CA7', 'score': 9.47}, {'connected_gene': 'GC16M066468', 'score': 0.44}, {'connected_gene': 'PIR55464', 'score': 0.44}, {'connected_gene': 'ENSG00000260146', 'score': 0.44}]
chr16	GH16I066578	66578787	66579572	1.08	[{'connected_gene': 'CMTM2', 'score': 550.77}, {'connected_gene': 'ENSG00000260650', 'score': 550.77}, {'connected_gene': 'TK2', 'score': 16.73}, {'connected_gene': 'CKLF', 'score': 12.17}, {'connected_gene': 'CKLF-CMTM1', 'score': 12.17}, {'connected_gene': 'CMTM1', 'score': 0.39}]
chr16	GH16I066580	66580218	66582376	0.95	[{'connected_gene': 'CMTM2', 'score': 550.77}, {'connected_gene': 'ENSG00000260650', 'score': 550.77}, {'connected_gene': 'BEAN1', 'score': 33.56}, {'connected_gene': 'CMTM3', 'score': 22.41}, {'connected_gene': 'CKLF', 'score': 11.41}, {'connected_gene': 'CKLF-CMTM1', 'score': 11.41}, {'connected_gene': 'TK2', 'score': 11.41}]
chr16	GH16I066564	66564818	66564967	0.4	[{'connected_gene': 'CMTM1', 'score': 550.77}, {'connected_gene': 'ENSG00000277978', 'score': 550.77}, {'connected_gene': 'BEAN1', 'score': 10.55}, {'connected_gene': 'CKLF', 'score': 0.39}, {'connected_gene': 'GC16M066555', 'score': 0.39}, {'connected_gene': 'CKLF-CMTM1', 'score': 0.39}, {'connected_gene': 'PIR36312', 'score': 0.39}]
chr16	GH16I066555	66555601	66555800	0.4	[{'connected_gene': 'GC16M066555', 'score': 550.77}, {'connected_gene': 'PIR36312', 'score': 550.77}, {'connected_gene': 'CKLF', 'score': 0.77}, {'connected_gene': 'CKLF-CMTM1', 'score': 0.77}, {'connected_gene': 'ENSG00000277978', 'score': 0.39}]
chr16	GH16I066510	66510267	66514067	1.35	[{'connected_gene': 'PIR49300', 'score': 550.77}, {'connected_gene': 'PIR55233', 'score': 550.77}, {'connected_gene': 'GC16M066512', 'score': 550.77}, {'connected_gene': 'BEAN1', 'score': 33.21}, {'connected_gene': 'TK2', 'score': 22.87}, {'connected_gene': 'BEAN1-AS1', 'score': 17.11}, {'connected_gene': 'CKLF', 'score': 12.2}, {'connected_gene': 'CKLF-CMTM1', 'score': 12.2}, {'connected_gene': 'CMTM2', 'score': 11.46}, {'connected_gene': 'CES4A', 'score': 4.5}, {'connected_gene': 'ENSG00000260851', 'score': 0.44}]
chr16	GH16I066509	66509487	66510189	0.43	[{'connected_gene': 'PIR49300', 'score': 550.77}, {'connected_gene': 'PIR55233', 'score': 550.77}, {'connected_gene': 'ENSG00000260755', 'score': 550.77}, {'connected_gene': 'PIR59655', 'score': 550.77}, {'connected_gene': 'BEAN1', 'score': 17.3}, {'connected_gene': 'CKLF', 'score': 11.91}, {'connected_gene': 'TK2', 'score': 11.91}, {'connected_gene': 'CKLF-CMTM1', 'score': 11.91}, {'connected_gene': 'GC16M066512', 'score': 0.77}, {'connected_gene': 'ENSG00000260851', 'score': 0.44}]
chr16	GH16I066507	66507771	66509292	1.16	[{'connected_gene': 'ENSG00000260755', 'score': 550.77}, {'connected_gene': 'PIR59655', 'score': 550.77}, {'connected_gene': 'BEAN1', 'score': 22.33}, {'connected_gene': 'CKLF', 'score': 11.91}, {'connected_gene': 'CKLF-CMTM1', 'score': 11.91}, {'connected_gene': 'TK2', 'score': 11.91}, {'connected_gene': 'ENSG00000260851', 'score': 0.44}, {'connected_gene': 'GC16P066491', 'score': 0.37}]