PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000273130	[[32567462, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32586367, 32586598], [32587340, 32587457], [32611837, 32611911], [32612116, 32612366]]	[[32568290, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32586367, 32586598], [32587340, 32587457], [32611837, 32611911], [32612116, 32612262]]
ENST00000481915	[[32567591, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32586367, 32586598], [32587340, 32587457], [32611837, 32611911], [32612116, 32612185]]	None
ENST00000432458	[[32567775, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32611837, 32611911], [32612116, 32612350]]	[[32568290, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32611837, 32611911], [32612116, 32612262]]
ENST00000472985	[[32571121, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578764]]	None
ENST00000413350	[[32582543, 32582698], [32586367, 32586598], [32587340, 32587457], [32611632, 32611745]]	[[32582543, 32582698], [32586367, 32586598], [32587340, 32587457], [32611632, 32611699]]
ENST00000424991	[[32586480, 32586598], [32587340, 32587457], [32608104, 32608227], [32611837, 32611911], [32612116, 32612350]]	[[32586480, 32586598], [32587340, 32587457], [32608104, 32608227], [32611837, 32611911], [32612116, 32612262]]
ENST00000475193	[[32586918, 32587457], [32611837, 32611911], [32612116, 32612317]]	None
ENST00000474077	[[32587365, 32587457], [32611837, 32612350]]	None
NM_016141	[[32567462, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32586367, 32586598], [32587340, 32587457], [32611837, 32611911], [32612116, 32612366]]	[[32568290, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32586367, 32586598], [32587340, 32587457], [32611837, 32611911], [32612116, 32612262]]
NM_001329135	[[32567462, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32611837, 32611911], [32612116, 32612416]]	[[32568290, 32568400], [32569937, 32570093], [32571031, 32571152], [32571775, 32571820], [32571952, 32572012], [32574477, 32574589], [32576002, 32576138], [32578502, 32578596], [32582528, 32582698], [32611837, 32611911], [32612116, 32612262]]

Promoter

Chrom	Start	End	Description
chr3	32612263	32612356	CAGE_peak_1_at_DYNC1LI1_5end
chr3	32612378	32612389	CAGE_peak_2_at_DYNC1LI1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I032800	32800141	32800909	0.56	[{'connected_gene': 'SUGT1P2', 'score': 11.55}, {'connected_gene': 'CNOT10-AS1', 'score': 11.51}, {'connected_gene': 'CNOT10', 'score': 11.43}, {'connected_gene': 'DYNC1LI1', 'score': 9.92}, {'connected_gene': 'GC03P032812', 'score': 0.39}, {'connected_gene': 'RPL23AP43', 'score': 0.37}, {'connected_gene': 'GC03M032797', 'score': 0.15}]
chr3	GH03I032497	32497801	32499000	1.04	[{'connected_gene': 'CMTM6', 'score': 18.64}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'CNOT10', 'score': 10.13}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3	GH03I032483	32483733	32485360	0.92	[{'connected_gene': 'CMTM6', 'score': 15.22}, {'connected_gene': 'DYNC1LI1', 'score': 10.53}, {'connected_gene': 'GC03P032466', 'score': 0.37}]
chr3	GH03I032487	32487580	32489035	0.31	[{'connected_gene': 'CMTM6', 'score': 19.26}, {'connected_gene': 'DYNC1LI1', 'score': 10.57}, {'connected_gene': 'GC03P032466', 'score': 0.34}]
chr3	GH03I032430	32430802	32434111	1.42	[{'connected_gene': 'CMTM6', 'score': 15.5}, {'connected_gene': 'RPL31P18', 'score': 11.07}, {'connected_gene': 'DYNC1LI1', 'score': 10.47}, {'connected_gene': 'CMTM7', 'score': 8.78}, {'connected_gene': 'GC03M031988', 'score': 0.31}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3	GH03I032481	32481577	32483190	0.49	[{'connected_gene': 'CMTM6', 'score': 17.97}, {'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'GC03P032466', 'score': 0.37}, {'connected_gene': 'CMTM7', 'score': 0.16}]
chr3	GH03I032480	32480427	32481553	0.31	[{'connected_gene': 'CMTM6', 'score': 11.56}, {'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.78}, {'connected_gene': 'CMTM7', 'score': 5.68}, {'connected_gene': 'GC03P032466', 'score': 0.39}]
chr3	GH03I032501	32501005	32503675	2.24	[{'connected_gene': 'CMTM6', 'score': 566.72}, {'connected_gene': 'CNOT10', 'score': 32.83}, {'connected_gene': 'UBP1', 'score': 11.46}, {'connected_gene': 'DYNC1LI1', 'score': 10.65}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'GC03P032466', 'score': 0.28}]
chr3	GH03I032596	32596444	32598055	0.77	[{'connected_gene': 'DYNC1LI1', 'score': 17.94}, {'connected_gene': 'RPL31P18', 'score': 11.23}, {'connected_gene': 'CMTM6', 'score': 11.22}, {'connected_gene': 'CNOT10', 'score': 11.05}, {'connected_gene': 'CNOT10-AS1', 'score': 10.57}, {'connected_gene': 'SUGT1P2', 'score': 10.56}, {'connected_gene': 'ENSG00000226955', 'score': 0.77}, {'connected_gene': 'PIR37638', 'score': 0.44}, {'connected_gene': 'GC03P032571', 'score': 0.31}]
chr3	GH03I032499	32499601	32499800	0.51	[{'connected_gene': 'DYNC1LI1', 'score': 10.64}, {'connected_gene': 'CNOT10', 'score': 10.13}, {'connected_gene': 'SUGT1P2', 'score': 10.12}, {'connected_gene': 'CNOT10-AS1', 'score': 10.12}, {'connected_gene': 'CMTM6', 'score': 0.77}, {'connected_gene': 'GC03P032466', 'score': 0.29}]
chr3	GH03I032661	32661996	32663498	0.43	[{'connected_gene': 'DYNC1LI1', 'score': 5.94}, {'connected_gene': 'CNOT10', 'score': 0.34}, {'connected_gene': 'RPL30P4', 'score': 0.31}]
chr3	GH03I032794	32794166	32795543	0.84	[{'connected_gene': 'DYNC1LI1', 'score': 14.47}, {'connected_gene': 'TRIM71', 'score': 12.91}, {'connected_gene': 'SUGT1P2', 'score': 11.56}, {'connected_gene': 'CNOT10-AS1', 'score': 11.52}, {'connected_gene': 'CNOT10', 'score': 11.44}, {'connected_gene': 'RPL23AP43', 'score': 0.39}, {'connected_gene': 'GC03P032812', 'score': 0.37}]
chr3	GH03I032427	32427049	32429336	1.04	[{'connected_gene': 'RPL31P18', 'score': 11.07}, {'connected_gene': 'CMTM6', 'score': 11.07}, {'connected_gene': 'DYNC1LI1', 'score': 10.47}, {'connected_gene': 'CMTM7', 'score': 5.71}, {'connected_gene': 'GC03M031988', 'score': 0.34}, {'connected_gene': 'GC03P032466', 'score': 0.28}]
chr3	GH03I032477	32477352	32478982	0.31	[{'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'CMTM6', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.77}, {'connected_gene': 'CMTM7', 'score': 5.68}, {'connected_gene': 'GC03P032466', 'score': 0.39}]
chr3	GH03I032472	32472557	32473400	0.58	[{'connected_gene': 'RPL31P18', 'score': 11.53}, {'connected_gene': 'CMTM6', 'score': 11.53}, {'connected_gene': 'DYNC1LI1', 'score': 10.76}, {'connected_gene': 'GC03P032466', 'score': 0.44}, {'connected_gene': 'CMTM7', 'score': 0.18}]
chr3	GH03I032684	32684049	32687361	2.06	[{'connected_gene': 'CNOT10', 'score': 575.49}, {'connected_gene': 'GLB1', 'score': 24.72}, {'connected_gene': 'TMPPE', 'score': 20.47}, {'connected_gene': 'UBP1', 'score': 11.03}, {'connected_gene': 'DYNC1LI1', 'score': 10.26}, {'connected_gene': 'RPL31P18', 'score': 10.15}, {'connected_gene': 'CMTM6', 'score': 10.15}, {'connected_gene': 'ENSG00000236732', 'score': 9.94}, {'connected_gene': 'TRIM71', 'score': 9.5}, {'connected_gene': 'PIR58788', 'score': 0.37}]
chr3	GH03I032835	32835123	32845554	1.32	[{'connected_gene': 'TRIM71', 'score': 12.84}, {'connected_gene': 'SUGT1P2', 'score': 10.74}, {'connected_gene': 'CNOT10-AS1', 'score': 10.72}, {'connected_gene': 'CNOT10', 'score': 10.68}, {'connected_gene': 'DYNC1LI1', 'score': 9.52}, {'connected_gene': 'PIR32571', 'score': 0.29}, {'connected_gene': 'GC03M032797', 'score': 0.21}]
chr3	GH03I032859	32859537	32860498	0.31	[{'connected_gene': 'TRIM71', 'score': 11.85}, {'connected_gene': 'SUGT1P2', 'score': 11.29}, {'connected_gene': 'CNOT10-AS1', 'score': 11.27}, {'connected_gene': 'CNOT10', 'score': 11.24}, {'connected_gene': 'DYNC1LI1', 'score': 8.99}, {'connected_gene': 'PIR32571', 'score': 0.37}, {'connected_gene': 'GC03M032797', 'score': 0.26}]
chr3	GH03I032418	32418885	32425681	1.61	[{'connected_gene': 'CMTM7', 'score': 17.12}, {'connected_gene': 'CMTM6', 'score': 11.68}, {'connected_gene': 'CNOT10', 'score': 11.08}, {'connected_gene': 'RPL31P18', 'score': 10.4}, {'connected_gene': 'DYNC1LI1', 'score': 10.02}, {'connected_gene': 'GC03M031988', 'score': 0.37}, {'connected_gene': 'GC03P032466', 'score': 0.26}]
chr3	GH03I032390	32390851	32395164	2.27	[{'connected_gene': 'CMTM7', 'score': 572.41}, {'connected_gene': 'DYNC1LI1', 'score': 9.46}, {'connected_gene': 'GC03M031988', 'score': 0.39}]
chr3	GH03I032603	32603014	32603704	0.38	[{'connected_gene': 'PIR37638', 'score': 550.77}, {'connected_gene': 'DYNC1LI1', 'score': 11.85}, {'connected_gene': 'RPL31P18', 'score': 11.17}, {'connected_gene': 'CMTM6', 'score': 11.17}, {'connected_gene': 'CNOT10', 'score': 10.63}, {'connected_gene': 'CNOT10-AS1', 'score': 10.57}, {'connected_gene': 'SUGT1P2', 'score': 10.57}, {'connected_gene': 'IGBP1P3', 'score': 0.37}, {'connected_gene': 'GC03P032571', 'score': 0.29}]
chr3	GH03I032592	32592109	32592218	0.38	[{'connected_gene': 'ENSG00000226955', 'score': 550.77}, {'connected_gene': 'DYNC1LI1', 'score': 12.26}, {'connected_gene': 'RPL31P18', 'score': 11.24}, {'connected_gene': 'CMTM6', 'score': 11.23}, {'connected_gene': 'GC03P032571', 'score': 0.34}]
chr3	GH03I032569	32569200	32571958	2.02	[{'connected_gene': 'GC03P032571', 'score': 550.77}, {'connected_gene': 'DYNC1LI1', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 31.41}, {'connected_gene': 'UBP1', 'score': 11.46}, {'connected_gene': 'GC03M032561', 'score': 0.77}]