PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000473414	[[149456256, 149459505], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470286]]	[[149459307, 149459505], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470231]]
ENST00000491617	[[149459176, 149459505], [149468043, 149468169], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470259]]	[[149468163, 149468169], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470231]]
ENST00000463077	[[149459212, 149459505], [149468464, 149468638], [149469189, 149469272], [149469996, 149470185]]	None
ENST00000483708	[[149459361, 149459505], [149468464, 149468638], [149469109, 149469272], [149469996, 149470074], [149470164, 149470237]]	[[149468580, 149468638], [149469109, 149469272], [149469996, 149470074], [149470164, 149470231]]
ENST00000469896	[[149468289, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470282]]	None
ENST00000483146	[[149468573, 149468638], [149469189, 149469845]]	None
ENST00000490008	[[149469597, 149470074], [149470164, 149470276]]	None
NR_135149	[[149456256, 149459505], [149468464, 149468638], [149469109, 149469272], [149469996, 149470074], [149470164, 149470286]]	None
NM_016094	[[149456256, 149459505], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470286]]	[[149459307, 149459505], [149468464, 149468638], [149469189, 149469272], [149469996, 149470074], [149470164, 149470231]]

Promoter

Chrom	Start	End	Description
chr3	149470229	149470290	CAGE_peak_1_at_COMMD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I149128	149128800	149133225	2.23	[{'connected_gene': 'HPS3', 'score': 550.77}, {'connected_gene': 'COMMD2', 'score': 14.18}, {'connected_gene': 'HLTF', 'score': 10.52}, {'connected_gene': 'TM4SF18', 'score': 10.28}, {'connected_gene': 'CPHL1P', 'score': 5.47}, {'connected_gene': 'GC03M149173', 'score': 0.26}]
chr3	GH03I150468	150468224	150471416	1.11	[{'connected_gene': 'EIF2A', 'score': 11.73}, {'connected_gene': 'COMMD2', 'score': 9.68}, {'connected_gene': 'GC03P150463', 'score': 0.44}, {'connected_gene': 'GC03M150475', 'score': 0.44}]
chr3	GH03I150543	150543913	150548628	2.28	[{'connected_gene': 'EIF2A', 'score': 596.96}, {'connected_gene': 'SERP1', 'score': 557.42}, {'connected_gene': 'COMMD2', 'score': 9.68}, {'connected_gene': 'SELENOT', 'score': 5.09}, {'connected_gene': 'GC03M150475', 'score': 0.19}]
chr3	GH03I149488	149488194	149491355	0.52	[{'connected_gene': 'TM4SF4', 'score': 9.45}, {'connected_gene': 'COMMD2', 'score': 8.78}, {'connected_gene': 'LOC100421817', 'score': 0.77}]
chr3	GH03I149471	149471300	149476067	1.74	[{'connected_gene': 'TM4SF4', 'score': 564.12}, {'connected_gene': 'COMMD2', 'score': 8.22}, {'connected_gene': 'ENSG00000239408', 'score': 0.44}]
chr3	GH03I150598	150598167	150607003	2.51	[{'connected_gene': 'SELENOT', 'score': 556.03}, {'connected_gene': 'SERP1', 'score': 550.77}, {'connected_gene': 'EIF2A', 'score': 52.33}, {'connected_gene': 'COMMD2', 'score': 11.96}, {'connected_gene': 'TSC22D2', 'score': 11.26}, {'connected_gene': 'ERICH6', 'score': 10.68}, {'connected_gene': 'ERICH6-AS1', 'score': 10.68}]
chr3	GH03I150344	150344175	150352560	1.28	[{'connected_gene': 'COMMD2', 'score': 15.67}, {'connected_gene': 'TSC22D2', 'score': 15.11}, {'connected_gene': 'EIF2A', 'score': 4.99}, {'connected_gene': 'P2RY14', 'score': 4.62}, {'connected_gene': 'LINC01214', 'score': 0.34}]
chr3	GH03I150375	150375576	150377115	1.3	[{'connected_gene': 'COMMD2', 'score': 14.18}, {'connected_gene': 'EIF2A', 'score': 11.95}, {'connected_gene': 'TSC22D2', 'score': 11.38}, {'connected_gene': 'LINC01214', 'score': 0.23}]
chr3	GH03I149751	149751343	149753261	2.1	[{'connected_gene': 'COMMD2', 'score': 564.92}, {'connected_gene': 'EIF2A', 'score': 20.73}, {'connected_gene': 'WWTR1', 'score': 0.37}]
chr3	GH03I149506	149506039	149508799	1.38	[{'connected_gene': 'COMMD2', 'score': 20.54}, {'connected_gene': 'WWTR1', 'score': 19.44}, {'connected_gene': 'TM4SF4', 'score': 11.88}, {'connected_gene': 'WWTR1-AS1', 'score': 10.31}, {'connected_gene': 'RNF13', 'score': 3.91}, {'connected_gene': 'LOC100421817', 'score': 0.39}, {'connected_gene': 'RNU6-1098P', 'score': 0.37}]
chr3	GH03I149662	149662547	149664743	0.72	[{'connected_gene': 'COMMD2', 'score': 14.92}, {'connected_gene': 'WWTR1', 'score': 9.77}, {'connected_gene': 'RNU6-1098P', 'score': 9.64}, {'connected_gene': 'WWTR1-AS1', 'score': 4.73}, {'connected_gene': 'PIR37939', 'score': 0.39}]
chr3	GH03I149706	149706392	149708031	0.31	[{'connected_gene': 'COMMD2', 'score': 15.46}, {'connected_gene': 'WWTR1', 'score': 11.26}, {'connected_gene': 'PIR37939', 'score': 0.29}]
chr3	GH03I149678	149678474	149678643	0.64	[{'connected_gene': 'COMMD2', 'score': 16.05}, {'connected_gene': 'PIR37939', 'score': 0.77}, {'connected_gene': 'WWTR1', 'score': 0.22}]
chr3	GH03I149646	149646177	149646823	0.93	[{'connected_gene': 'COMMD2', 'score': 12.53}, {'connected_gene': 'RNU6-1098P', 'score': 9.99}, {'connected_gene': 'WWTR1', 'score': 9.89}, {'connected_gene': 'WWTR1-IT1', 'score': 0.77}, {'connected_gene': 'GC03P149613', 'score': 0.29}]
chr3	GH03I149640	149640116	149640765	0.58	[{'connected_gene': 'COMMD2', 'score': 5.88}, {'connected_gene': 'WWTR1-IT1', 'score': 0.44}, {'connected_gene': 'GC03P149613', 'score': 0.31}, {'connected_gene': 'WWTR1', 'score': 0.15}]
chr3	GH03I149633	149633707	149635226	0.9	[{'connected_gene': 'COMMD2', 'score': 5.96}, {'connected_gene': 'WWTR1-IT1', 'score': 0.37}, {'connected_gene': 'GC03P149613', 'score': 0.34}, {'connected_gene': 'WWTR1', 'score': 0.15}]
chr3	GH03I149628	149628275	149633038	0.31	[{'connected_gene': 'COMMD2', 'score': 6.82}, {'connected_gene': 'WWTR1-IT1', 'score': 0.37}, {'connected_gene': 'GC03P149613', 'score': 0.37}, {'connected_gene': 'WWTR1', 'score': 0.14}]
chr3	GH03I149793	149792544	149792603	0.5	[{'connected_gene': 'ANKUB1', 'score': 550.1}, {'connected_gene': 'COMMD2', 'score': 10.88}, {'connected_gene': 'RNU6-507P', 'score': 0.39}, {'connected_gene': 'RNF13', 'score': 0.37}]
chr3	GH03I149468	149468541	149469801	0.89	[{'connected_gene': 'WWTR1', 'score': 13.93}, {'connected_gene': 'TM4SF4', 'score': 10.79}, {'connected_gene': 'WWTR1-AS1', 'score': 9.21}, {'connected_gene': 'COMMD2', 'score': 8.38}, {'connected_gene': 'TMEM183B', 'score': 4.26}, {'connected_gene': 'ENSG00000239408', 'score': 0.77}]
chr3	GH03I149644	149644010	149644927	0.43	[{'connected_gene': 'WWTR1', 'score': 15.17}, {'connected_gene': 'RNU6-1098P', 'score': 9.99}, {'connected_gene': 'COMMD2', 'score': 5.55}, {'connected_gene': 'WWTR1-IT1', 'score': 0.44}, {'connected_gene': 'GC03P149613', 'score': 0.29}]
chr3	GH03I149613	149613982	149622404	1.51	[{'connected_gene': 'WWTR1', 'score': 15.03}, {'connected_gene': 'WWTR1-AS1', 'score': 11.77}, {'connected_gene': 'COMMD2', 'score': 4.45}, {'connected_gene': 'TM4SF18', 'score': 1.99}, {'connected_gene': 'TM4SF1', 'score': 1.37}, {'connected_gene': 'GC03P149613', 'score': 0.44}, {'connected_gene': 'WWTR1-IT1', 'score': 0.29}]
chr3	GH03I149568	149568903	149570260	0.63	[{'connected_gene': 'WWTR1', 'score': 18.55}, {'connected_gene': 'WWTR1-AS1', 'score': 11.66}, {'connected_gene': 'RNU6-1098P', 'score': 10.97}, {'connected_gene': 'COMMD2', 'score': 10.83}, {'connected_gene': 'GC03P149613', 'score': 0.26}]
chr3	GH03I149701	149701196	149704749	0.72	[{'connected_gene': 'WWTR1', 'score': 11.17}, {'connected_gene': 'WWTR1-AS1', 'score': 11.12}, {'connected_gene': 'RNU6-1098P', 'score': 10.53}, {'connected_gene': 'COMMD2', 'score': 4.69}, {'connected_gene': 'PIR37939', 'score': 0.31}]
chr3	GH03I149811	149811919	149817803	2.33	[{'connected_gene': 'RNF13', 'score': 573.49}, {'connected_gene': 'PFN2', 'score': 25.26}, {'connected_gene': 'COMMD2', 'score': 16.93}, {'connected_gene': 'TSC22D2', 'score': 11.2}, {'connected_gene': 'TMEM183B', 'score': 7.36}, {'connected_gene': 'RNU6-720P', 'score': 0.15}, {'connected_gene': 'ANKUB1', 'score': 0.1}]
chr3	GH03I149500	149500698	149502779	0.58	[{'connected_gene': 'RNU6-1098P', 'score': 11.27}, {'connected_gene': 'COMMD2', 'score': 10.24}, {'connected_gene': 'TM4SF4', 'score': 7.23}, {'connected_gene': 'TMEM183B', 'score': 5.6}, {'connected_gene': 'TSC22D2', 'score': 4.99}, {'connected_gene': 'LOC100421817', 'score': 0.44}]
chr3	GH03I149671	149671114	149671263	0.56	[{'connected_gene': 'RNU6-1098P', 'score': 10.63}, {'connected_gene': 'COMMD2', 'score': 7.92}, {'connected_gene': 'PIR37939', 'score': 0.77}, {'connected_gene': 'WWTR1-AS1', 'score': 0.39}, {'connected_gene': 'WWTR1', 'score': 0.2}]
chr3	GH03I149566	149566218	149567713	0.51	[{'connected_gene': 'RNU6-1098P', 'score': 11.69}, {'connected_gene': 'WWTR1-AS1', 'score': 11.65}, {'connected_gene': 'WWTR1', 'score': 11.59}, {'connected_gene': 'COMMD2', 'score': 10.83}, {'connected_gene': 'TM4SF1', 'score': 5.1}, {'connected_gene': 'GC03P149613', 'score': 0.25}]
chr3	GH03I149649	149649864	149652068	0.38	[{'connected_gene': 'WWTR1-IT1', 'score': 550.77}, {'connected_gene': 'COMMD2', 'score': 12.04}, {'connected_gene': 'RNU6-1098P', 'score': 9.99}, {'connected_gene': 'WWTR1', 'score': 9.9}, {'connected_gene': 'WWTR1-AS1', 'score': 0.44}]
chr3	GH03I149648	149648094	149649693	0.83	[{'connected_gene': 'WWTR1-IT1', 'score': 550.77}, {'connected_gene': 'COMMD2', 'score': 12.87}, {'connected_gene': 'RNU6-1098P', 'score': 9.99}, {'connected_gene': 'WWTR1', 'score': 9.9}, {'connected_gene': 'GC03P149613', 'score': 0.28}]
chr3	GH03I149493	149493463	149494443	1.06	[{'connected_gene': 'LOC100421817', 'score': 550.77}, {'connected_gene': 'COMMD2', 'score': 10.3}, {'connected_gene': 'TM4SF4', 'score': 6.26}]
chr3	GH03I149652	149652894	149660695	2.22	[{'connected_gene': 'WWTR1-AS1', 'score': 560.07}, {'connected_gene': 'WWTR1', 'score': 559.56}, {'connected_gene': 'COMMD2', 'score': 12.03}, {'connected_gene': 'WWTR1-IT1', 'score': 0.44}]
chr3	GH03I150406	150406536	150416120	2.3	[{'connected_gene': 'GC03M150408', 'score': 550.77}, {'connected_gene': 'TSC22D2', 'score': 550.77}, {'connected_gene': 'WWTR1', 'score': 11.61}, {'connected_gene': 'COMMD2', 'score': 11.56}, {'connected_gene': 'WWTR1-IT1', 'score': 10.58}, {'connected_gene': 'EIF2A', 'score': 5.97}, {'connected_gene': 'NPM1P29', 'score': 5.25}, {'connected_gene': 'GC03P150463', 'score': 0.23}]
chr3	GH03I149381	149381216	149392107	1.77	[{'connected_gene': 'ENSG00000243885', 'score': 550.77}, {'connected_gene': 'TM4SF4', 'score': 12.44}, {'connected_gene': 'TM4SF18', 'score': 10.77}, {'connected_gene': 'TM4SF1', 'score': 10.28}, {'connected_gene': 'COMMD2', 'score': 1.48}, {'connected_gene': 'TM4SF1-AS1', 'score': 0.44}, {'connected_gene': 'LOC105374151', 'score': 0.37}]
chr3	GH03I149675	149675108	149677036	0.31	[{'connected_gene': 'PIR37939', 'score': 550.77}, {'connected_gene': 'COMMD2', 'score': 16.17}, {'connected_gene': 'WWTR1', 'score': 0.21}]
chr3	GH03I149465	149465235	149467810	0.86	[{'connected_gene': 'ENSG00000241929', 'score': 550.77}, {'connected_gene': 'ENSG00000239408', 'score': 550.77}, {'connected_gene': 'WWTR1', 'score': 14.09}, {'connected_gene': 'WWTR1-AS1', 'score': 9.21}, {'connected_gene': 'COMMD2', 'score': 8.32}, {'connected_gene': 'TM4SF4', 'score': 0.44}]