PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263849	[[79578281, 79578399], [79588021, 79588098], [79590797, 79590914], [79598701, 79598843], [79601456, 79601608], [79609641, 79609741], [79610648, 79610748], [79627455, 79627563], [79629562, 79632000]]	[[79578383, 79578399], [79588021, 79588098], [79590797, 79590914], [79598701, 79598843], [79601456, 79601608], [79609641, 79609741], [79610648, 79610748], [79627455, 79627563], [79629562, 79629728]]
ENST00000521873	[[79578323, 79578399], [79588021, 79588098], [79590797, 79591625]]	None
ENST00000521176	[[79578363, 79578399], [79590797, 79590914], [79598701, 79598843], [79601456, 79601608], [79609641, 79609740]]	None
ENST00000519307	[[79609640, 79609741], [79610648, 79610748], [79624224, 79624341], [79627455, 79627563], [79629562, 79629737]]	[[79609640, 79609741], [79610648, 79610748], [79624224, 79624341], [79627455, 79627563], [79629562, 79629728]]
NM_016010	[[79578281, 79578399], [79588021, 79588098], [79590797, 79590914], [79598701, 79598843], [79601456, 79601608], [79609641, 79609741], [79610648, 79610748], [79627455, 79627563], [79629562, 79632000]]	[[79578383, 79578399], [79588021, 79588098], [79590797, 79590914], [79598701, 79598843], [79601456, 79601608], [79609641, 79609741], [79610648, 79610748], [79627455, 79627563], [79629562, 79629728]]

Promoter

Chrom	Start	End	Description
chr8	79578291	79578334	CAGE_peak_1_at_FAM164A_5end
chr8	79578337	79578360	CAGE_peak_2_at_FAM164A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I078515	78515174	78517962	2.16	[{'connected_gene': 'PKIA', 'score': 556.43}, {'connected_gene': 'IL7', 'score': 10.76}, {'connected_gene': 'ZC2HC1A', 'score': 9.71}, {'connected_gene': 'PKIA-AS1', 'score': 0.26}, {'connected_gene': 'LOC105375911', 'score': 0.11}]
chr8	GH08I078508	78508086	78508494	0.86	[{'connected_gene': 'ZC2HC1A', 'score': 10.64}, {'connected_gene': 'IL7', 'score': 10.0}, {'connected_gene': 'PKIA', 'score': 0.44}, {'connected_gene': 'GC08M078438', 'score': 0.25}, {'connected_gene': 'PKIA-AS1', 'score': 0.23}, {'connected_gene': 'LOC105375911', 'score': 0.1}]
chr8	GH08I078507	78507776	78507815	0.79	[{'connected_gene': 'ZC2HC1A', 'score': 10.64}, {'connected_gene': 'IL7', 'score': 10.0}, {'connected_gene': 'PKIA', 'score': 0.44}, {'connected_gene': 'GC08M078438', 'score': 0.25}, {'connected_gene': 'PKIA-AS1', 'score': 0.23}, {'connected_gene': 'LOC105375911', 'score': 0.1}]
chr8	GH08I078683	78683546	78683715	0.31	[{'connected_gene': 'ZC2HC1A', 'score': 11.05}, {'connected_gene': 'GC08M078610', 'score': 0.37}, {'connected_gene': 'IL7', 'score': 0.13}]
chr8	GH08I078664	78664715	78667402	2.2	[{'connected_gene': 'ZC2HC1A', 'score': 552.59}, {'connected_gene': 'LOC105375911', 'score': 550.77}, {'connected_gene': 'ENSG00000254352', 'score': 33.75}, {'connected_gene': 'IL7', 'score': 1.99}, {'connected_gene': 'GC08M078610', 'score': 0.28}]
chr8	GH08I078615	78615506	78615535	0.46	[{'connected_gene': 'ZC2HC1A', 'score': 10.91}, {'connected_gene': 'ENSG00000260398', 'score': 0.44}, {'connected_gene': 'GC08M078638', 'score': 0.31}, {'connected_gene': 'LOC105375911', 'score': 0.23}, {'connected_gene': 'GC08M078610', 'score': 0.17}]
chr8	GH08I078671	78671801	78672000	0.2	[{'connected_gene': 'ZC2HC1A', 'score': 0.44}, {'connected_gene': 'GC08M078610', 'score': 0.31}]
chr8	GH08I078685	78685382	78685536	0.22	[{'connected_gene': 'ENSG00000254352', 'score': 21.98}, {'connected_gene': 'ZC2HC1A', 'score': 1.67}, {'connected_gene': 'PKIA', 'score': 1.61}, {'connected_gene': 'GC08M078610', 'score': 0.37}, {'connected_gene': 'IL7', 'score': 0.13}]