PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370558	[[87170258, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87213867]]	[[87170582, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
ENST00000535010	[[87170299, 87170654], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87209071]]	[[87185275, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
ENST00000482504	[[87170577, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194124], [87195770, 87195794], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208951]]	[[87170582, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194124], [87195770, 87195794], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
ENST00000602603	[[87199926, 87200374], [87200761, 87200862], [87204343, 87204378]]	None
NM_001206653	[[87170252, 87170654], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87213867]]	[[87185275, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
NM_016009	[[87170252, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87213867]]	[[87170582, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
NM_001206652	[[87170252, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194124], [87195770, 87195794], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87213867]]	[[87170582, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194124], [87195770, 87195794], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]
NM_001206651	[[87170252, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194172], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87213867]]	[[87170582, 87170654], [87181406, 87181548], [87185189, 87185318], [87188222, 87188356], [87189995, 87190088], [87194085, 87194172], [87200284, 87200374], [87200761, 87200862], [87207890, 87208119], [87208810, 87208918]]

Promoter

Chrom	Start	End	Description
chr1	87170192	87170195	CAGE_peak_11_at_SH3GLB1_5end
chr1	87170218	87170234	CAGE_peak_6_at_SH3GLB1_5end
chr1	87170247	87170276	CAGE_peak_3_at_SH3GLB1_5end
chr1	87170277	87170315	CAGE_peak_2_at_SH3GLB1_5end
chr1	87170348	87170368	CAGE_peak_10_at_SH3GLB1_5end
chr1	87170390	87170432	CAGE_peak_4_at_SH3GLB1_5end
chr1	87170437	87170446	CAGE_peak_8_at_SH3GLB1_5end
chr1	87170448	87170539	CAGE_peak_1_at_SH3GLB1_5end
chr1	87170541	87170551	CAGE_peak_5_at_SH3GLB1_5end
chr1	87170553	87170562	CAGE_peak_7_at_SH3GLB1_5end
chr1	87170577	87170582	CAGE_peak_9_at_SH3GLB1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I086739	86739596	86740924	0.63	[{'connected_gene': 'HS2ST1', 'score': 4.57}, {'connected_gene': 'GC01P086761', 'score': 0.34}, {'connected_gene': 'GC01P086705', 'score': 0.29}, {'connected_gene': 'SH3GLB1', 'score': 0.28}]
chr1	GH01I086841	86841134	86841347	0.26	[{'connected_gene': 'SH3GLB1', 'score': 1.79}, {'connected_gene': 'LOC105378831', 'score': 0.37}, {'connected_gene': 'GC01M086864', 'score': 0.34}, {'connected_gene': 'GC01M086865', 'score': 0.34}, {'connected_gene': 'GC01M086809', 'score': 0.2}]
chr1	GH01I086787	86787696	86789974	1.58	[{'connected_gene': 'SH3GLB1', 'score': 8.36}, {'connected_gene': 'LOC105378828', 'score': 6.12}, {'connected_gene': 'RPL17P5', 'score': 0.77}, {'connected_gene': 'LOC105378831', 'score': 0.28}]
chr1	GH01I086339	86339478	86339652	0.35	[{'connected_gene': 'SH3GLB1', 'score': 10.23}, {'connected_gene': 'LOC105378825', 'score': 0.44}, {'connected_gene': 'MIR7856', 'score': 0.37}]
chr1	GH01I086709	86709001	86709238	0.72	[{'connected_gene': 'SH3GLB1', 'score': 5.64}, {'connected_gene': 'GC01P086705', 'score': 0.77}, {'connected_gene': 'GC01P086761', 'score': 0.23}]
chr1	GH01I086792	86792063	86795425	1.72	[{'connected_gene': 'LOC105378828', 'score': 13.32}, {'connected_gene': 'SH3GLB1', 'score': 5.33}, {'connected_gene': 'RPL17P5', 'score': 0.44}, {'connected_gene': 'LOC105378831', 'score': 0.29}]
chr1	GH01I086772	86772838	86776407	1.82	[{'connected_gene': 'LOC105378828', 'score': 12.88}, {'connected_gene': 'SH3GLB1', 'score': 8.05}, {'connected_gene': 'RPL17P5', 'score': 0.39}, {'connected_gene': 'GC01P086761', 'score': 0.39}]
chr1	GH01I086845	86845838	86846895	1.2	[{'connected_gene': 'LOC105378828', 'score': 5.97}, {'connected_gene': 'SH3GLB1', 'score': 1.7}, {'connected_gene': 'GC01M086864', 'score': 0.37}, {'connected_gene': 'GC01M086865', 'score': 0.37}, {'connected_gene': 'LOC105378831', 'score': 0.34}, {'connected_gene': 'GC01M086809', 'score': 0.21}]
chr1	GH01I086725	86725421	86727703	0.31	[{'connected_gene': 'LOC105378828', 'score': 6.05}, {'connected_gene': 'SH3GLB1', 'score': 4.82}, {'connected_gene': 'GC01P086705', 'score': 0.34}, {'connected_gene': 'GC01P086761', 'score': 0.29}]
chr1	GH01I086703	86703167	86707029	2.52	[{'connected_gene': 'LOC105378828', 'score': 563.34}, {'connected_gene': 'SH3GLB1', 'score': 557.88}, {'connected_gene': 'GC01P086705', 'score': 550.77}]
chr1	GH01I086731	86731712	86737902	0.66	[{'connected_gene': 'LOC105378828', 'score': 13.0}, {'connected_gene': 'GC01P086705', 'score': 0.31}, {'connected_gene': 'GC01P086761', 'score': 0.31}, {'connected_gene': 'SH3GLB1', 'score': 0.29}]
chr1	GH01I086746	86746770	86750647	0.2	[{'connected_gene': 'LOC105378828', 'score': 11.86}, {'connected_gene': 'GC01P086761', 'score': 0.39}, {'connected_gene': 'GC01P086705', 'score': 0.26}, {'connected_gene': 'SH3GLB1', 'score': 0.26}]
chr1	GH01I086713	86713201	86714401	0.51	[{'connected_gene': 'GC01P086705', 'score': 0.44}, {'connected_gene': 'SH3GLB1', 'score': 0.44}, {'connected_gene': 'GC01P086761', 'score': 0.25}]