PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000281589	[[25670299, 25673389]]	[[25670336, 25672232]]
NM_030979	[[25670275, 25672705]]	[[25670336, 25672232]]

Promoter

Chrom	Start	End	Description
chr13	25670268	25670315	CAGE_peak_1_at_PABPC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I024910	24910598	24912012	1.11	[{'connected_gene': 'NUP58', 'score': 6.12}, {'connected_gene': 'MTMR6', 'score': 5.56}, {'connected_gene': 'PARP4', 'score': 1.74}, {'connected_gene': 'PABPC3', 'score': 1.35}, {'connected_gene': 'CENPJ', 'score': 0.39}, {'connected_gene': 'GC13P024795', 'score': 0.1}, {'connected_gene': 'PIR31198', 'score': 0.1}]
chr13	GH13I025899	25899087	25900182	0.2	[{'connected_gene': 'PABPC3', 'score': 5.59}, {'connected_gene': 'PIR50437', 'score': 0.29}, {'connected_gene': 'GC13P025866', 'score': 0.29}, {'connected_gene': 'RN7SL741P', 'score': 0.26}, {'connected_gene': 'ATP8A2', 'score': 0.03}]
chr13	GH13I025892	25892310	25892753	0.31	[{'connected_gene': 'PABPC3', 'score': 5.59}, {'connected_gene': 'PIR50437', 'score': 0.31}, {'connected_gene': 'GC13P025866', 'score': 0.31}, {'connected_gene': 'RN7SL741P', 'score': 0.23}, {'connected_gene': 'ATP8A2', 'score': 0.03}]
chr13	GH13I025095	25095870	25095929	0.5	[{'connected_gene': 'PABPC3', 'score': 550.77}, {'connected_gene': 'LOC105370120', 'score': 550.77}, {'connected_gene': 'ENSG00000279695', 'score': 0.25}]
chr13	GH13I025096	25096089	25096148	0.5	[{'connected_gene': 'PABPC3', 'score': 550.77}, {'connected_gene': 'LOC105370120', 'score': 550.77}, {'connected_gene': 'ENSG00000279695', 'score': 0.25}]
chr13	GH13I026048	26048801	26053130	1.98	[{'connected_gene': 'SHISA2', 'score': 561.57}, {'connected_gene': 'PABPC3', 'score': 5.03}, {'connected_gene': 'LINC00415', 'score': 0.77}, {'connected_gene': 'PIR56473', 'score': 0.21}]
chr13	GH13I025131	25131736	25133201	0.2	[{'connected_gene': 'AMER2', 'score': 19.39}, {'connected_gene': 'RNF17', 'score': 9.74}, {'connected_gene': 'ENSG00000279695', 'score': 0.44}, {'connected_gene': 'PABPC3', 'score': 0.28}]
chr13	GH13I025113	25113823	25115302	0.68	[{'connected_gene': 'AMER2', 'score': 10.97}, {'connected_gene': 'LINC01053', 'score': 10.84}, {'connected_gene': 'LINC00463', 'score': 10.84}, {'connected_gene': 'PABPC3', 'score': 0.37}, {'connected_gene': 'LOC105370120', 'score': 0.37}, {'connected_gene': 'ENSG00000279695', 'score': 0.31}]
chr13	GH13I025115	25115524	25117996	0.88	[{'connected_gene': 'AMER2', 'score': 50.18}, {'connected_gene': 'LINC01053', 'score': 10.84}, {'connected_gene': 'LINC00463', 'score': 10.84}, {'connected_gene': 'PABPC3', 'score': 0.34}, {'connected_gene': 'ENSG00000279695', 'score': 0.34}, {'connected_gene': 'LOC105370120', 'score': 0.34}]
chr13	GH13I025136	25136275	25138151	0.51	[{'connected_gene': 'AMER2', 'score': 19.62}, {'connected_gene': 'LINC01053', 'score': 10.97}, {'connected_gene': 'LINC00463', 'score': 10.97}, {'connected_gene': 'ENSG00000279695', 'score': 0.77}, {'connected_gene': 'PABPC3', 'score': 0.26}]