PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000285402	[[103563799, 103564275], [103572679, 103573216]]	[[103563955, 103564275], [103572679, 103573112]]
ENST00000518835	[[103572689, 103572800], [103572988, 103573245]]	[[103572792, 103572800], [103572988, 103573112]]
NM_024410	[[103563847, 103564275], [103572679, 103573245]]	[[103563955, 103564275], [103572679, 103573112]]

Promoter

Chrom	Start	End	Description
chr8	103563792	103563808	CAGE_peak_4_at_ODF1_5end
chr8	103563811	103563830	CAGE_peak_1_at_ODF1_5end
chr8	103563834	103563847	CAGE_peak_3_at_ODF1_5end
chr8	103563856	103563873	CAGE_peak_2_at_ODF1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I102647	102647213	102647953	0.79	[{'connected_gene': 'UBR5', 'score': 12.31}, {'connected_gene': 'ODF1', 'score': 10.27}, {'connected_gene': 'LOC101927245', 'score': 0.44}, {'connected_gene': 'POU5F1P2', 'score': 0.31}]
chr8	GH08I102534	102534180	102538884	1.41	[{'connected_gene': 'UBR5', 'score': 13.69}, {'connected_gene': 'RNU6ATAC8P', 'score': 10.79}, {'connected_gene': 'ENSG00000272037', 'score': 10.77}, {'connected_gene': 'LOC107986898', 'score': 8.05}, {'connected_gene': 'RNU6-1224P', 'score': 0.77}, {'connected_gene': 'ODF1', 'score': 0.37}]
chr8	GH08I102582	102582553	102586590	1.47	[{'connected_gene': 'LOC107986898', 'score': 16.16}, {'connected_gene': 'RNU6-1224P', 'score': 11.7}, {'connected_gene': 'RNU6ATAC8P', 'score': 10.98}, {'connected_gene': 'ODF1', 'score': 10.85}, {'connected_gene': 'UBR5-AS1', 'score': 7.28}, {'connected_gene': 'CTHRC1', 'score': 5.25}, {'connected_gene': 'KLF10', 'score': 5.05}, {'connected_gene': 'UBR5', 'score': 1.94}, {'connected_gene': 'LOC105375684', 'score': 0.29}, {'connected_gene': 'GC08M102622', 'score': 0.28}]
chr8	GH08I102540	102540960	102542307	1.03	[{'connected_gene': 'LOC107986898', 'score': 5.01}, {'connected_gene': 'LOC105375684', 'score': 0.44}, {'connected_gene': 'RNU6-1224P', 'score': 0.44}, {'connected_gene': 'ODF1', 'score': 0.44}]
chr8	GH08I102555	102555330	102555714	0.74	[{'connected_gene': 'RNU6-1224P', 'score': 11.83}, {'connected_gene': 'LOC107986898', 'score': 11.8}, {'connected_gene': 'KLF10', 'score': 1.38}, {'connected_gene': 'LOC105375684', 'score': 0.77}, {'connected_gene': 'ODF1', 'score': 0.77}, {'connected_gene': 'GC08M102622', 'score': 0.2}]
chr8	GH08I102649	102649863	102650478	0.52	[{'connected_gene': 'RNU6-1224P', 'score': 10.55}, {'connected_gene': 'LOC107986898', 'score': 10.55}, {'connected_gene': 'ODF1', 'score': 10.27}, {'connected_gene': 'LOC101927245', 'score': 0.77}, {'connected_gene': 'KLF10', 'score': 0.44}, {'connected_gene': 'POU5F1P2', 'score': 0.31}]
chr8	GH08I102557	102557035	102557854	0.74	[{'connected_gene': 'RNU6-1224P', 'score': 12.14}, {'connected_gene': 'LOC107986898', 'score': 12.11}, {'connected_gene': 'RNU6ATAC8P', 'score': 10.81}, {'connected_gene': 'LOC105375683', 'score': 10.53}, {'connected_gene': 'UBR5', 'score': 10.53}, {'connected_gene': 'ODF1', 'score': 0.44}, {'connected_gene': 'LOC105375684', 'score': 0.44}, {'connected_gene': 'GC08M102622', 'score': 0.21}]
chr8	GH08I102556	102556573	102556722	0.31	[{'connected_gene': 'RNU6-1224P', 'score': 11.77}, {'connected_gene': 'LOC107986898', 'score': 11.74}, {'connected_gene': 'LOC105375684', 'score': 0.44}, {'connected_gene': 'ODF1', 'score': 0.44}, {'connected_gene': 'GC08M102622', 'score': 0.2}]
chr8	GH08I102551	102551590	102551649	0.82	[{'connected_gene': 'LOC105375684', 'score': 550.77}, {'connected_gene': 'ODF1', 'score': 550.77}, {'connected_gene': 'LOC107986898', 'score': 10.69}, {'connected_gene': 'GC08M102622', 'score': 0.19}]
chr8	GH08I102544	102544333	102544482	0.31	[{'connected_gene': 'LOC105375684', 'score': 0.44}, {'connected_gene': 'ODF1', 'score': 0.44}, {'connected_gene': 'RNU6-1224P', 'score': 0.39}]
chr8	GH08I102505	102505116	102506042	0.38	[{'connected_gene': 'RPS12P15', 'score': 550.77}, {'connected_gene': 'LOC107986898', 'score': 12.16}, {'connected_gene': 'RNU6-1224P', 'score': 12.13}, {'connected_gene': 'RNU6ATAC8P', 'score': 11.11}, {'connected_gene': 'UBR5', 'score': 11.09}, {'connected_gene': 'LOC105375683', 'score': 11.09}, {'connected_gene': 'ODF1', 'score': 10.44}]