PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000322122	[[31225341, 31225618], [31226052, 31226449], [31230415, 31230511], [31230609, 31230840], [31232216, 31232239], [31234147, 31234266], [31235501, 31236510]]	[[31226059, 31226449], [31230415, 31230511], [31230609, 31230840], [31232216, 31232239], [31234147, 31234266], [31235501, 31236076]]
NM_001008274	[[31225341, 31225618], [31226052, 31226449], [31230415, 31230511], [31230609, 31230840], [31232216, 31232239], [31234147, 31234266], [31235501, 31236510]]	[[31226059, 31226449], [31230415, 31230511], [31230609, 31230840], [31232216, 31232239], [31234147, 31234266], [31235501, 31236076]]

Promoter

Chrom	Start	End	Description
chr16	31225337	31225344	CAGE_peak_6_at_TRIM72_5end
chr16	31225409	31225428	CAGE_peak_3_at_TRIM72_5end
chr16	31225432	31225453	CAGE_peak_2_at_TRIM72_5end
chr16	31225461	31225498	CAGE_peak_1_at_TRIM72_5end
chr16	31225515	31225535	CAGE_peak_4_at_TRIM72_5end
chr16	31225541	31225553	CAGE_peak_5_at_TRIM72_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I031213	31213140	31216382	1.93	[{'connected_gene': 'TRIM72', 'score': 550.77}, {'connected_gene': 'C16orf58', 'score': 15.7}, {'connected_gene': 'ZNF785', 'score': 14.81}, {'connected_gene': 'FUS', 'score': 13.92}, {'connected_gene': 'MIR762HG', 'score': 13.01}, {'connected_gene': 'ARMC5', 'score': 12.25}, {'connected_gene': 'ZNF720', 'score': 12.15}, {'connected_gene': 'NPIPB13', 'score': 11.84}, {'connected_gene': 'SETD1A', 'score': 11.31}, {'connected_gene': 'ZNF747', 'score': 10.69}, {'connected_gene': 'LOC730183', 'score': 10.49}, {'connected_gene': 'ENSG00000261474', 'score': 10.09}, {'connected_gene': 'PYCARD', 'score': 10.06}, {'connected_gene': 'ZNF764', 'score': 6.31}, {'connected_gene': 'PYDC1', 'score': 5.04}]
chr16	GH16I031212	31212159	31212226	0.44	[{'connected_gene': 'TRIM72', 'score': 550.77}, {'connected_gene': 'ZNF629', 'score': 1.26}, {'connected_gene': 'PYCARD', 'score': 0.44}]
chr16	GH16I031351	31351201	31358414	2.16	[{'connected_gene': 'ITGAX', 'score': 585.66}, {'connected_gene': 'STX4', 'score': 19.26}, {'connected_gene': 'PYDC1', 'score': 10.34}, {'connected_gene': 'KAT8', 'score': 7.29}, {'connected_gene': 'ITGAM', 'score': 6.47}, {'connected_gene': 'ZNF646', 'score': 5.25}, {'connected_gene': 'ARMC5', 'score': 5.07}, {'connected_gene': 'ZNF764', 'score': 5.06}, {'connected_gene': 'HSD3B7', 'score': 4.92}, {'connected_gene': 'LOC647086', 'score': 4.72}, {'connected_gene': 'ENSG00000260911', 'score': 4.23}, {'connected_gene': 'TRIM72', 'score': 4.03}, {'connected_gene': 'FUS', 'score': 3.32}, {'connected_gene': 'ZNF668', 'score': 2.8}, {'connected_gene': 'PYCARD', 'score': 1.2}]
chr16	GH16I031333	31333800	31333949	0.9	[{'connected_gene': 'ITGAX', 'score': 12.19}, {'connected_gene': 'TRIM72', 'score': 11.79}, {'connected_gene': 'PYCARD', 'score': 11.78}, {'connected_gene': 'PRSS8', 'score': 11.05}, {'connected_gene': 'ITGAM', 'score': 0.19}]
chr16	GH16I031229	31229240	31230559	0.83	[{'connected_gene': 'PYCARD', 'score': 6.48}, {'connected_gene': 'GC16P031253', 'score': 0.77}, {'connected_gene': 'GC16P031244', 'score': 0.39}, {'connected_gene': 'TRIM72', 'score': 0.37}]
chr16	GH16I031206	31206960	31207109	0.78	[{'connected_gene': 'PYCARD', 'score': 0.77}, {'connected_gene': 'TRIM72', 'score': 0.44}]
chr16	GH16I031207	31207215	31207422	0.54	[{'connected_gene': 'PYCARD', 'score': 0.77}, {'connected_gene': 'TRIM72', 'score': 0.44}]
chr16	GH16I031176	31176738	31177800	0.72	[{'connected_gene': 'PYCARD', 'score': 22.48}, {'connected_gene': 'PRSS36', 'score': 12.71}, {'connected_gene': 'PRSS8', 'score': 12.11}, {'connected_gene': 'TRIM72', 'score': 11.0}, {'connected_gene': 'HSD3B7', 'score': 10.98}, {'connected_gene': 'SETD1A', 'score': 10.97}, {'connected_gene': 'ZNF646', 'score': 10.64}, {'connected_gene': 'ZNF668', 'score': 10.64}, {'connected_gene': 'FUS', 'score': 0.77}, {'connected_gene': 'NDUFA3P6', 'score': 0.77}]
chr16	GH16I031247	31247920	31249021	0.43	[{'connected_gene': 'PYDC1', 'score': 33.23}, {'connected_gene': 'TRIM72', 'score': 12.51}, {'connected_gene': 'PYCARD', 'score': 12.46}, {'connected_gene': 'FUS', 'score': 11.27}, {'connected_gene': 'PRSS36', 'score': 10.91}, {'connected_gene': 'STX4', 'score': 10.35}, {'connected_gene': 'STX1B', 'score': 10.29}, {'connected_gene': 'LOC730183', 'score': 4.29}, {'connected_gene': 'GC16P031244', 'score': 0.44}, {'connected_gene': 'ITGAM', 'score': 0.39}]
chr16	GH16I031245	31245160	31246586	0.43	[{'connected_gene': 'PYDC1', 'score': 16.39}, {'connected_gene': 'PYCARD', 'score': 12.32}, {'connected_gene': 'TRIM72', 'score': 12.25}, {'connected_gene': 'FUS', 'score': 10.65}, {'connected_gene': 'PRSS8', 'score': 10.6}, {'connected_gene': 'GC16P031244', 'score': 0.77}, {'connected_gene': 'ITGAM', 'score': 0.39}]
chr16	GH16I031252	31252997	31254799	1.45	[{'connected_gene': 'PYDC1', 'score': 31.12}, {'connected_gene': 'PYCARD', 'score': 17.89}, {'connected_gene': 'TRIM72', 'score': 11.94}, {'connected_gene': 'PRSS36', 'score': 10.88}, {'connected_gene': 'ITGAM', 'score': 7.69}, {'connected_gene': 'ITGAX', 'score': 6.8}, {'connected_gene': 'ZNF646', 'score': 6.32}, {'connected_gene': 'ZNF668', 'score': 4.94}, {'connected_gene': 'STX4', 'score': 3.19}, {'connected_gene': 'KAT8', 'score': 2.97}, {'connected_gene': 'GC16P031244', 'score': 0.39}]
chr16	GH16I031178	31178498	31183169	2.14	[{'connected_gene': 'FUS', 'score': 587.91}, {'connected_gene': 'SRCAP', 'score': 70.92}, {'connected_gene': 'SETD1A', 'score': 66.98}, {'connected_gene': 'SMG1P5', 'score': 54.83}, {'connected_gene': 'ZNF764', 'score': 51.91}, {'connected_gene': 'ENSG00000260267', 'score': 47.4}, {'connected_gene': 'PRR14', 'score': 47.37}, {'connected_gene': 'RNF40', 'score': 45.46}, {'connected_gene': 'ENSG00000260304', 'score': 37.47}, {'connected_gene': 'FBRS', 'score': 36.32}, {'connected_gene': 'ZNF646', 'score': 33.91}, {'connected_gene': 'PYCARD', 'score': 32.36}, {'connected_gene': 'C16orf58', 'score': 31.34}, {'connected_gene': 'ZNF668', 'score': 29.02}, {'connected_gene': 'ORAI3', 'score': 26.43}, {'connected_gene': 'SLX1A', 'score': 25.19}, {'connected_gene': 'ENSG00000235560', 'score': 22.43}, {'connected_gene': 'STX4', 'score': 21.82}, {'connected_gene': 'PHKG2', 'score': 21.61}, {'connected_gene': 'BCL7C', 'score': 18.88}, {'connected_gene': 'ENSG00000260625', 'score': 18.58}, {'connected_gene': 'ZNF785', 'score': 16.6}, {'connected_gene': 'PYDC1', 'score': 16.36}, {'connected_gene': 'ZNF771', 'score': 13.07}, {'connected_gene': 'PRSS36', 'score': 12.69}, {'connected_gene': 'NPIPB13', 'score': 12.51}, {'connected_gene': 'PRSS8', 'score': 12.1}, {'connected_gene': 'LOC730183', 'score': 11.26}, {'connected_gene': 'ZNF688', 'score': 11.21}, {'connected_gene': 'ZNF689', 'score': 11.14}, {'connected_gene': 'TRIM72', 'score': 11.02}, {'connected_gene': 'HSD3B7', 'score': 10.98}, {'connected_gene': 'ZNF768', 'score': 10.76}, {'connected_gene': 'FBXL19', 'score': 10.37}, {'connected_gene': 'ZNF720', 'score': 10.24}, {'connected_gene': 'MIR762HG', 'score': 10.19}, {'connected_gene': 'KAT8', 'score': 10.14}, {'connected_gene': 'ENSG00000262766', 'score': 9.99}]
chr16	GH16I031228	31228820	31229109	0.49	[{'connected_gene': 'GC16P031253', 'score': 0.77}, {'connected_gene': 'GC16P031244', 'score': 0.39}, {'connected_gene': 'TRIM72', 'score': 0.39}]
chr16	GH16I031226	31226643	31227616	0.31	[{'connected_gene': 'GC16P031253', 'score': 550.77}, {'connected_gene': 'PYCARD', 'score': 6.52}, {'connected_gene': 'TRIM72', 'score': 0.39}, {'connected_gene': 'GC16P031244', 'score': 0.37}]
chr16	GH16I031243	31243832	31244800	0.97	[{'connected_gene': 'GC16P031244', 'score': 550.77}, {'connected_gene': 'PYDC1', 'score': 29.58}, {'connected_gene': 'PYCARD', 'score': 12.32}, {'connected_gene': 'TRIM72', 'score': 12.25}, {'connected_gene': 'FUS', 'score': 10.65}, {'connected_gene': 'PRSS8', 'score': 10.61}, {'connected_gene': 'ZNF764', 'score': 7.48}, {'connected_gene': 'ITGAM', 'score': 0.37}]