PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000250003	[[17741114, 17741959], [17742448, 17742527], [17742801, 17743678]]	[[17741329, 17741959], [17742448, 17742527], [17742801, 17743055]]
NM_002478	[[17741109, 17741959], [17742448, 17742527], [17742801, 17743678]]	[[17741329, 17741959], [17742448, 17742527], [17742801, 17743055]]

Promoter

Chrom	Start	End	Description
chr11	17741084	17741094	CAGE_peak_3_at_MYOD1_5end
chr11	17741111	17741124	CAGE_peak_1_at_MYOD1_5end
chr11	17741206	17741215	CAGE_peak_6_at_MYOD1_5end
chr11	17741228	17741243	CAGE_peak_4_at_MYOD1_5end
chr11	17741254	17741282	CAGE_peak_2_at_MYOD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I017812	17812654	17812803	0.49	[{'connected_gene': 'MYOD1', 'score': 9.8}, {'connected_gene': 'GC11P017794', 'score': 0.37}, {'connected_gene': 'GC11M017875', 'score': 0.2}, {'connected_gene': 'KCNC1', 'score': 0.18}, {'connected_gene': 'SERGEF', 'score': 0.08}]
chr11	GH11I017931	17931714	17931863	0.31	[{'connected_gene': 'MYOD1', 'score': 8.78}, {'connected_gene': 'GC11P017950', 'score': 0.37}, {'connected_gene': 'GC11P017887', 'score': 0.26}, {'connected_gene': 'SERGEF', 'score': 0.18}]
chr11	GH11I017718	17718224	17722303	1.45	[{'connected_gene': 'MYOD1', 'score': 550.77}, {'connected_gene': 'LOC102723330', 'score': 29.72}, {'connected_gene': 'ENSG00000254586', 'score': 10.99}, {'connected_gene': 'KCNC1', 'score': 0.39}]
chr11	GH11I017731	17731174	17731323	0.72	[{'connected_gene': 'KCNC1', 'score': 0.77}, {'connected_gene': 'MYOD1', 'score': 0.39}]
chr11	GH11I017978	17978774	17978923	0.71	[{'connected_gene': 'SERGEF', 'score': 11.01}, {'connected_gene': 'MYOD1', 'score': 10.67}, {'connected_gene': 'KCNC1', 'score': 10.63}, {'connected_gene': 'GC11P017952', 'score': 0.31}]
chr11	GH11I017985	17985430	17987275	0.95	[{'connected_gene': 'SERGEF', 'score': 22.28}, {'connected_gene': 'MYOD1', 'score': 9.9}, {'connected_gene': 'SAAL1', 'score': 9.74}, {'connected_gene': 'HIGD1AP5', 'score': 9.74}, {'connected_gene': 'GC11P017952', 'score': 0.29}]
chr11	GH11I017972	17972803	17973366	0.52	[{'connected_gene': 'SERGEF', 'score': 15.03}, {'connected_gene': 'MYOD1', 'score': 9.69}, {'connected_gene': 'GC11P017952', 'score': 0.34}]
chr11	GH11I017696	17696247	17701483	1.12	[{'connected_gene': 'LOC102723330', 'score': 585.73}, {'connected_gene': 'ENSG00000254586', 'score': 0.77}, {'connected_gene': 'MYOD1', 'score': 0.34}]
chr11	GH11I017713	17713621	17715393	0.51	[{'connected_gene': 'LOC102723330', 'score': 14.87}, {'connected_gene': 'MYOD1', 'score': 0.44}]
chr11	GH11I017707	17707543	17708189	0.51	[{'connected_gene': 'LOC102723330', 'score': 12.21}, {'connected_gene': 'KCNC1', 'score': 10.55}, {'connected_gene': 'MYOD1', 'score': 0.39}]
chr11	GH11I017648	17648033	17654655	0.79	[{'connected_gene': 'LOC102723330', 'score': 19.58}, {'connected_gene': 'ENSG00000254586', 'score': 18.5}, {'connected_gene': 'SPTY2D1', 'score': 15.82}, {'connected_gene': 'MYOD1', 'score': 14.36}, {'connected_gene': 'SNORD14A', 'score': 13.09}, {'connected_gene': 'SAAL1', 'score': 12.85}, {'connected_gene': 'ENSG00000256361', 'score': 12.67}, {'connected_gene': 'ENSG00000256588', 'score': 12.67}, {'connected_gene': 'TSG101', 'score': 11.33}, {'connected_gene': 'SNORD14B', 'score': 10.77}, {'connected_gene': 'GC11M017461', 'score': 0.77}]