PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000279441	[[102641233, 102641624], [102642742, 102642846], [102643577, 102643737], [102645918, 102646052], [102647010, 102647155], [102647342, 102647507], [102649354, 102649480], [102649943, 102650092], [102650234, 102650476], [102651217, 102651359]]	[[102641523, 102641624], [102642742, 102642846], [102643577, 102643737], [102645918, 102646052], [102647010, 102647155], [102647342, 102647507], [102649354, 102649480], [102649943, 102650092], [102650234, 102650476], [102651217, 102651322]]
ENST00000539681	[[102649399, 102649447], [102649943, 102650092], [102650234, 102650476], [102651217, 102651359]]	[[102649399, 102649447], [102649943, 102650092], [102650234, 102650476], [102651217, 102651322]]
NM_002425	[[102641232, 102641624], [102642742, 102642846], [102643577, 102643737], [102645918, 102646052], [102647010, 102647155], [102647342, 102647507], [102649354, 102649480], [102649943, 102650092], [102650234, 102650476], [102651217, 102651359]]	[[102641523, 102641624], [102642742, 102642846], [102643577, 102643737], [102645918, 102646052], [102647010, 102647155], [102647342, 102647507], [102649354, 102649480], [102649943, 102650092], [102650234, 102650476], [102651217, 102651322]]

Promoter

Chrom	Start	End	Description
chr11	102651279	102651288	CAGE_peak_2_at_MMP10_5end
chr11	102651343	102651365	CAGE_peak_1_at_MMP10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I102729	102729365	102731309	0.66	[{'connected_gene': 'MMP27', 'score': 17.88}, {'connected_gene': 'BIRC2', 'score': 11.61}, {'connected_gene': 'MMP10', 'score': 11.07}, {'connected_gene': 'MMP1', 'score': 10.47}, {'connected_gene': 'MMP3', 'score': 9.92}, {'connected_gene': 'RNU7-159P', 'score': 9.49}, {'connected_gene': 'MMP8', 'score': 0.77}, {'connected_gene': 'WTAPP1', 'score': 0.37}]
chr11	GH11I102733	102733370	102733519	0.66	[{'connected_gene': 'MMP10', 'score': 11.08}, {'connected_gene': 'MMP27', 'score': 10.56}, {'connected_gene': 'MMP1', 'score': 10.48}, {'connected_gene': 'MMP3', 'score': 9.92}, {'connected_gene': 'RNU7-159P', 'score': 9.49}, {'connected_gene': 'MMP8', 'score': 0.44}, {'connected_gene': 'WTAPP1', 'score': 0.39}]
chr11	GH11I102780	102780319	102781309	1.26	[{'connected_gene': 'MMP10', 'score': 550.77}, {'connected_gene': 'MMP3', 'score': 9.68}, {'connected_gene': 'MMP1', 'score': 4.87}, {'connected_gene': 'WTAPP1', 'score': 0.29}]
chr11	GH11I102727	102727401	102728851	0.89	[{'connected_gene': 'MMP8', 'score': 550.77}, {'connected_gene': 'MMP27', 'score': 19.15}, {'connected_gene': 'MMP10', 'score': 11.07}, {'connected_gene': 'MMP1', 'score': 10.46}, {'connected_gene': 'MMP3', 'score': 9.91}, {'connected_gene': 'RNU7-159P', 'score': 9.49}, {'connected_gene': 'BIRC2', 'score': 8.01}, {'connected_gene': 'TMEM123', 'score': 1.75}, {'connected_gene': 'BIRC3', 'score': 1.47}, {'connected_gene': 'WTAPP1', 'score': 0.37}]
chr11	GH11I102558	102558892	102562276	1.39	[{'connected_gene': 'MMP7', 'score': 19.3}, {'connected_gene': 'MMP20', 'score': 13.11}, {'connected_gene': 'ENSG00000256916', 'score': 11.17}, {'connected_gene': 'BIRC2', 'score': 10.59}, {'connected_gene': 'MMP10', 'score': 4.61}, {'connected_gene': 'ANGPTL5', 'score': 4.11}, {'connected_gene': 'BIRC3', 'score': 1.85}]
chr11	GH11I102783	102783078	102784554	0.56	[{'connected_gene': 'MMP3', 'score': 10.33}, {'connected_gene': 'MMP13', 'score': 9.42}, {'connected_gene': 'MMP10', 'score': 0.77}, {'connected_gene': 'MMP1', 'score': 0.39}, {'connected_gene': 'WTAPP1', 'score': 0.28}]
chr11	GH11I102794	102794401	102794600	0.56	[{'connected_gene': 'MMP1', 'score': 0.77}, {'connected_gene': 'MMP10', 'score': 0.39}, {'connected_gene': 'WTAPP1', 'score': 0.25}]