PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380338	[[20341662, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20622243, 20622542]]	[[20346440, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20622243, 20622255]]
ENST00000355930	[[20344967, 20346572], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20622243, 20622514]]	[[20346440, 20346572], [20354805, 20354877], [20360739, 20360839], [20363473, 20363586]]
ENST00000429426	[[20346196, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20621771, 20621872]]	[[20346440, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20621771, 20621774]]
ENST00000475957	[[20362702, 20363603], [20365666, 20365742], [20413718, 20414423], [20620652, 20620833], [20622243, 20622439]]	None
ENST00000380323	[[20345074, 20346572], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20382378, 20382485]]	None
ENST00000469261	[[20346290, 20346572], [20360739, 20360839], [20363473, 20363567]]	None
ENST00000488705	[[20346350, 20346572], [20353522, 20353594], [20354805, 20354877], [20382378, 20382469]]	None
ENST00000380321	[[20346403, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20382378, 20382467]]	[[20346440, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363586]]
ENST00000468513	[[20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20410558, 20410668], [20411813, 20411960]]	None
ENST00000491137	[[20360750, 20360839], [20363473, 20363603], [20365666, 20365742], [20380204, 20380325], [20382378, 20382450]]	None
NM_001286691	[[20341662, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20621771, 20621986]]	[[20346440, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20621771, 20621774]]
NM_004529	[[20341662, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20622243, 20622542]]	[[20346440, 20346572], [20353522, 20353594], [20354805, 20354877], [20360739, 20360839], [20363473, 20363603], [20365666, 20365742], [20413718, 20414423], [20448120, 20448264], [20456701, 20456784], [20620652, 20620833], [20622243, 20622255]]

Promoter

Chrom	Start	End	Description
chr9	20382446	20382493	CAGE_peak_4_at_MLLT3_5end
chr9	20620829	20620848	CAGE_peak_7_at_MLLT3_5end
chr9	20621834	20621884	CAGE_peak_5_at_MLLT3_5end
chr9	20621927	20621996	CAGE_peak_3_at_MLLT3_5end
chr9	20622444	20622468	CAGE_peak_2_at_MLLT3_5end
chr9	20622478	20622525	CAGE_peak_1_at_MLLT3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I020640	20640042	20641221	1.06	[{'connected_gene': 'MIR491', 'score': 10.1}, {'connected_gene': 'MLLT3', 'score': 0.37}, {'connected_gene': 'FOCAD', 'score': 0.37}]
chr9	GH09I020634	20634362	20634511	0.46	[{'connected_gene': 'FOCAD', 'score': 11.91}, {'connected_gene': 'MIR491', 'score': 10.23}, {'connected_gene': 'MLLT3', 'score': 0.39}]
chr9	GH09I020619	20619752	20625051	1.99	[{'connected_gene': 'MLLT3', 'score': 556.39}, {'connected_gene': 'KLHL9', 'score': 23.36}, {'connected_gene': 'FOCAD', 'score': 11.63}, {'connected_gene': 'IFNA20P', 'score': 10.09}, {'connected_gene': 'RPL7AP48', 'score': 0.17}]
chr9	GH09I020557	20557904	20559589	0.89	[{'connected_gene': 'MLLT3', 'score': 12.23}, {'connected_gene': 'FOCAD', 'score': 10.51}, {'connected_gene': 'MIR491', 'score': 9.89}, {'connected_gene': 'RPL7AP48', 'score': 0.31}]
chr9	GH09I020610	20610510	20612618	1.07	[{'connected_gene': 'MLLT3', 'score': 12.96}, {'connected_gene': 'FOCAD', 'score': 10.47}, {'connected_gene': 'RPL7AP48', 'score': 0.18}]
chr9	GH09I020353	20353230	20357544	1.05	[{'connected_gene': 'MLLT3', 'score': 11.46}, {'connected_gene': 'GC09M020330', 'score': 0.34}, {'connected_gene': 'MIR4473', 'score': 0.22}]
chr9	GH09I020620	20618382	20618551	0.72	[{'connected_gene': 'MLLT3', 'score': 0.77}, {'connected_gene': 'RPL7AP48', 'score': 0.17}]
chr9	GH09I020618	20618600	20618911	0.92	[{'connected_gene': 'MLLT3', 'score': 0.77}, {'connected_gene': 'RPL7AP48', 'score': 0.17}]
chr9	GH09I020599	20599262	20599531	0.2	[{'connected_gene': 'MLLT3', 'score': 35.06}, {'connected_gene': 'RPL7AP48', 'score': 0.2}]
chr9	GH09I020553	20553183	20554380	0.77	[{'connected_gene': 'MLLT3', 'score': 12.0}, {'connected_gene': 'RPL7AP48', 'score': 0.34}]
chr9	GH09I020593	20592998	20593932	0.49	[{'connected_gene': 'MLLT3', 'score': 33.43}, {'connected_gene': 'RPL7AP48', 'score': 0.21}]
chr9	GH09I020601	20601801	20602000	0.31	[{'connected_gene': 'MLLT3', 'score': 12.58}, {'connected_gene': 'RPL7AP48', 'score': 0.2}]
chr9	GH09I020550	20550838	20552600	1.18	[{'connected_gene': 'MLLT3', 'score': 13.59}, {'connected_gene': 'RPL7AP48', 'score': 0.37}]
chr9	GH09I020592	20592762	20592971	0.2	[{'connected_gene': 'MLLT3', 'score': 0.31}, {'connected_gene': 'RPL7AP48', 'score': 0.21}]
chr9	GH09I020604	20604345	20605283	0.72	[{'connected_gene': 'MLLT3', 'score': 6.63}, {'connected_gene': 'RPL7AP48', 'score': 0.19}]
chr9	GH09I020941	20941001	20941401	0.91	[{'connected_gene': 'HACD4', 'score': 12.3}, {'connected_gene': 'MLLT3', 'score': 11.04}, {'connected_gene': 'FOCAD', 'score': 10.8}, {'connected_gene': 'LOC105375989', 'score': 0.17}, {'connected_gene': 'SNORA30B', 'score': 0.1}]
chr9	GH09I020441	20441749	20443572	0.43	[{'connected_gene': 'RNU4-26P', 'score': 0.34}, {'connected_gene': 'MIR4474', 'score': 0.22}, {'connected_gene': 'MLLT3', 'score': 0.1}]
chr9	GH09I020478	20478200	20478401	0.38	[{'connected_gene': 'MIR4474', 'score': 0.34}, {'connected_gene': 'RNU4-26P', 'score': 0.22}, {'connected_gene': 'MLLT3', 'score': 0.11}]
chr9	GH09I020477	20477043	20477192	0.66	[{'connected_gene': 'MIR4474', 'score': 0.31}, {'connected_gene': 'RNU4-26P', 'score': 0.22}, {'connected_gene': 'MLLT3', 'score': 0.11}]
chr9	GH09I020511	20511701	20513497	0.63	[{'connected_gene': 'MIR4474', 'score': 0.39}, {'connected_gene': 'RPL7AP48', 'score': 0.37}, {'connected_gene': 'MLLT3', 'score': 0.14}]
chr9	GH09I020508	20508201	20508600	0.69	[{'connected_gene': 'MIR4474', 'score': 0.44}, {'connected_gene': 'RPL7AP48', 'score': 0.34}, {'connected_gene': 'MLLT3', 'score': 0.14}]
chr9	GH09I020509	20509006	20510344	0.2	[{'connected_gene': 'MIR4474', 'score': 0.44}, {'connected_gene': 'RPL7AP48', 'score': 0.34}, {'connected_gene': 'MLLT3', 'score': 0.14}]
chr9	GH09I020505	20505043	20505172	0.2	[{'connected_gene': 'MIR4474', 'score': 0.77}, {'connected_gene': 'RPL7AP48', 'score': 0.31}, {'connected_gene': 'MLLT3', 'score': 0.13}]
chr9	GH09I020408	20408141	20409189	0.72	[{'connected_gene': 'MIR4473', 'score': 0.77}, {'connected_gene': 'GC09M020330', 'score': 0.18}, {'connected_gene': 'MLLT3', 'score': 0.08}]
chr9	GH09I020398	20398703	20398852	0.2	[{'connected_gene': 'MIR4473', 'score': 0.39}, {'connected_gene': 'GC09M020330', 'score': 0.2}, {'connected_gene': 'MLLT3', 'score': 0.07}]
chr9	GH09I020373	20373111	20374012	0.2	[{'connected_gene': 'MIR4473', 'score': 0.28}, {'connected_gene': 'GC09M020330', 'score': 0.26}, {'connected_gene': 'MLLT3', 'score': 0.07}]
chr9	GH09I020376	20376272	20377486	0.46	[{'connected_gene': 'MIR4473', 'score': 0.29}, {'connected_gene': 'GC09M020330', 'score': 0.26}, {'connected_gene': 'MLLT3', 'score': 0.07}]
chr9	GH09I020382	20382763	20383032	0.84	[{'connected_gene': 'MIR4473', 'score': 0.31}, {'connected_gene': 'GC09M020330', 'score': 0.23}, {'connected_gene': 'MLLT3', 'score': 0.07}]
chr9	GH09I020532	20532400	20532532	0.23	[{'connected_gene': 'RPL7AP48', 'score': 550.77}, {'connected_gene': 'MLLT3', 'score': 5.27}, {'connected_gene': 'MIR4474', 'score': 0.29}]
chr9	GH09I020568	20568972	20571336	0.69	[{'connected_gene': 'RPL7AP48', 'score': 0.28}, {'connected_gene': 'MLLT3', 'score': 0.23}]
chr9	GH09I020524	20524863	20524992	0.43	[{'connected_gene': 'RPL7AP48', 'score': 0.44}, {'connected_gene': 'MIR4474', 'score': 0.34}, {'connected_gene': 'MLLT3', 'score': 0.15}]