PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
TK1	0	CDKN1A	1	affinity chromatography technology, pull down	Huang DY (2001), Huang DY (2001)	2
SMURF1	4	SLC25A5	1	affinity chromatography technology	Xie Y (2013)	1
RPS6KA1	3	GSK3B	1	enzymatic study	Larrea MD (2009)	1
ATXN3	2	DDX39A	3	affinity chromatography technology	Kristensen LV (2018)	1
TP53	0	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down	Wang C (2003), Akakura S (2001), Peng Y (2001), Nagata Y (1999), Wang J (2011), Burch L (2004), Taipale M (2012), Fogeron ML (2013), Walerych D (2004)	9
PJA1	1	UBE2L3	1	pull down	Zoabi M (2011)	1
TUBA1A	13	TUBB	3	biochemical, biochemical, pull down	Havugimana PC (2012), Kristensen AR (2012), Wang W (2014)	3
DNAJA1	2	CANX	4	biochemical	Wan C (2015)	1
PRKN	1	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Imai Y (2003), Sarraf SA (2013), Huttlin EL (2017)	3
HSPA8	4	TUBA1A	13	affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014)	2
ATXN3	2	PSRC1	0	affinity chromatography technology	Hein MY (2015)	1
UBQLN1	1	APP	1	two hybrid, affinity chromatography technology, fluorescent resonance energy transfe	Stieren ES (2011), Stieren ES (2011), Hiltunen M (2006)	3
MARCH5	0	DNM1L	3	affinity chromatography technology, affinity chromatography technology	Yonashiro R (2006), Nakamura N (2006)	2
CUL1	7	RPLP0	1	affinity chromatography technology	Bennett EJ (2010)	1
ACLY	3	SDHB	0	biochemical	Wan C (2015)	1
USP13	2	UBC	7	enzymatic study, pull down, pull down, pull down, pull down	Zhang YH (2012), Nathan JA (2013), Zhang YH (2012), Zhang X (2017), Kwasna D (2018)	5
TRAF6	0	UBC	7	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study	Muroi M (2011), Park S (2013), Sun L (2004), Kanayama A (2004), Sakamoto H (2015), Yu J (2016), Middleton AJ (2017)	7
HSPA8	4	EP300	36	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Du C (2017), Du C (2017)	3
ATXN3	2	CDK4	2	affinity chromatography technology	Kristensen LV (2018)	1
AEBP2	1	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
PML	7	DNM2	2	affinity chromatography technology	Hein MY (2015)	1
CREBBP	29	HDAC3	5	affinity chromatography technology, affinity chromatography technology, pull down, pull down	Chuang HC (2006), Chuang HC (2006), Chuang HC (2006), Chuang HC (2006)	4
CSNK2B	5	GSK3B	1	two hybrid	Wallach T (2013)	1
UBC	7	HSD17B11	1	pull down	Zhang X (2017)	1
ATXN3	2	CHEK1	2	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study	Tu Y (2017), Tu Y (2017), Tu Y (2017), Tu Y (2017), Tu Y (2017)	5
OTUB2	0	UBC	7	enzymatic study, enzymatic study, x-ray crystallography, enzymatic study, pull down	Edelmann MJ (2009), Mevissen TE (2013), Altun M (2015), Altun M (2015), Kwasna D (2018)	5
EP300	36	MDC1	8	affinity chromatography technology	Jung SY (2005)	1
HSP90AA1	7	VCP	6	affinity chromatography technology, affinity chromatography technology	Vij N (2006), Yu CC (2013)	2
SEH1L	1	SUMO1	0	affinity chromatography technology	Hein MY (2015)	1
APP	1	HSPA8	4	affinity chromatography technology	Yamamoto YH (2010)	1
PSMC5	4	RAD23B	1	biochemical	Wan C (2015)	1
ATXN3	2	RPLP0	1	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	TP53	0	affinity chromatography technology, affinity chromatography technology, pull down, pull down, enzymatic study	Liu H (2016), Liu H (2016), Liu H (2016), Liu H (2016), Liu H (2016)	5
ATXN3	2	SDC2	0	affinity chromatography technology	Hein MY (2015)	1
DNAJA1	2	RPLP0	1	biochemical	Kristensen AR (2012)	1
PRKN	1	TUBB	3	affinity chromatography technology	Zanon A (2013)	1
ATXN3	2	SLC25A3	1	affinity chromatography technology	Kristensen LV (2018)	1
HSPA1A	0	HSPA8	4	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
CDKN1A	1	TEX11	0	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
CREB1	1	TP53	0	pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Giebler HA (2000), Giebler HA (2000), Giebler HA (2000), Okoshi R (2011), Borger DR (2006), Chen TC (2014)	6
BCL7C	0	APP	1	pull down	Olah J (2011)	1
MAP3K1	4	RAD23A	1	enzymatic study	Charlaftis N (2014)	1
RFFL	0	ATXN3	2	enzymatic study	Loch CM (2012)	1
RAD23B	1	STUB1	4	biochemical	Havugimana PC (2012)	1
VCP	6	CHEK1	2	affinity chromatography technology	Yu CC (2013)	1
BAG3	4	PSMC5	4	affinity chromatography technology	Chen Y (2013)	1
DYNC1H1	41	HSPA1A	0	affinity chromatography technology	Hein MY (2015)	1
TK1	0	TUBB3	3	two hybrid	Vinayagam A (2011)	1
ATXN3	2	PSMC5	4	affinity chromatography technology	Wang H (2007)	1
TRAF6	0	DDB1	6	affinity chromatography technology	Antonioli M (2014)	1
ATXN3	2	C8orf82	0	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	LPCAT1	1	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	MALT1	1	affinity chromatography technology	Kristensen LV (2018)	1
AMFR	2	UBC	7	pull down, pull down, imaging technique, affinity chromatography technology, enzymatic study, x-ray crystallography, pull down, x-ray crystallography, pull down, enzymatic study, enzymatic study, pull down, affinity chromatography technology	Zhong X (2004), Yang H (2010), Ying Z (2009), Jo Y (2011), Ye Y (2003), Xu Y (2012), Liu S (2012), Liu S (2012), Xu Y (2012), Morito D (2008), Flierman D (2006), Liu W (2014), Fang S (2001)	13
ATXN3	2	ATXN3	2	pull down, pull down, imaging technique, pull down	Gales L (2005), Saunders HM (2011), Saunders HM (2011), Santambrogio C (2012)	4
CUL4A	2	TP53	0	affinity chromatography technology	Banks D (2006)	1
UBE2L3	1	NFKBIA	0	enzymatic study	Gonen H (1999)	1
APP	1	GSK3B	1	affinity chromatography technology, affinity chromatography technology, pull down	Zhou F (2012), Zhou F (2012), Olah J (2011)	3
UBC	7	SDHA	2	affinity chromatography technology	Matsumoto M (2005)	1
CUL1	7	SDHB	0	affinity chromatography technology	Bennett EJ (2010)	1
TRAF6	0	TP53	0	enzymatic study, affinity chromatography technology	Zhang X (2016), Zhang X (2016)	2
RAD23B	1	UBQLN1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HDAC6	0	SLC25A10	0	affinity chromatography technology	Joshi P (2013)	1
TP53	0	CSNK2B	5	protein complementation assay	Srivastav RK (2011)	1
CUL4A	2	SLC25A22	1	affinity chromatography technology	Bennett EJ (2010)	1
MKNK1	0	APP	1	pull down	Olah J (2011)	1
ATXN3	2	USP13	2	affinity chromatography technology	Sowa ME (2009)	1
AMFR	2	MGRN1	4	affinity chromatography technology, affinity chromatography technology	Mukherjee R (2016), Mukherjee R (2016)	2
UBE2S	2	CREBBP	29	biochemical	Wan C (2015)	1
HDAC6	0	RAD23B	1	affinity chromatography technology, affinity chromatography technology	New M (2013), New M (2013)	2
TRAF6	0	MARCH5	0	affinity chromatography technology	Shi HX (2011)	1
ATXN3	2	FAM184B	2	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	IDH3B	0	affinity chromatography technology	Kristensen LV (2018)	1
SMURF1	4	UBC	7	affinity chromatography technology, enzymatic study, pull down	Xie Y (2013), Kristariyanto YA (2015), Zhang Y (2017)	3
UBC	7	VCP	6	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhong X (2006), Dai RM (2001), Bish RA (2007), Lim JJ (2016), Zhang X (2017)	6
ATXN3	2	SLC25A5	1	affinity chromatography technology	Kristensen LV (2018)	1
MKNK1	0	ATXN3	2	two hybrid	Vinayagam A (2011)	1
DDB1	6	UBC	7	affinity chromatography technology, affinity chromatography technology	Angers S (2006), Matsumoto M (2005)	2
ACLY	3	HSPA8	4	affinity chromatography technology	Zhang C (2016)	1
STUB1	4	UBE2L3	1	pull down	Hampe C (2006)	1
HSP90AA1	7	CDK4	2	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Tsutsumi S (2012), Wang H (2002), Taipale M (2012), Varjosalo M (2013), Huttlin EL (2015), Woodford MR (2016), Huttlin EL (2017)	7
ATXN3	2	DDB1	6	affinity chromatography technology, affinity chromatography technology	Tu Y (2017), Tu Y (2017)	2
ATXN3	2	SLC25A6	3	affinity chromatography technology	Kristensen LV (2018)	1
CUL4A	2	TUBB	3	affinity chromatography technology	Bennett EJ (2010)	1
RAD23A	1	UBC	7	pull down, pull down, x-ray crystallography, pull down, x-ray crystallography, affinity chromatography technology, pull down, pull down, unspecified method, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down, x-ray crystallography, pull down, pull down, pull down, x-ray crystallography, pull down, pull down	Kang Y (2006), Sims JJ (2009), Kang Y (2007), Kang Y (2007), Wang Q (2003), Scanlon TC (2009), Raasi S (2003), Sokratous K (2012), Varadan R (2005), Fenner BJ (2009), Raasi S (2005), Massey LK (2004), Chen L (2006), Nathan JA (2013), Nathan JA (2013), Jung J (2014), Goh AM (2008), Castaneda CA (2013), Nakasone MA (2013), Lai MY (2012), Kristariyanto YA (2015), Zhang X (2017)	22
MAP3K1	4	UBQLN1	1	enzymatic study	Charlaftis N (2014)	1
HDAC6	0	PSMC5	4	affinity chromatography technology	New M (2013)	1
SLC25A5	1	HSP90AA1	7	biochemical	Havugimana PC (2012)	1
EWSR1	2	DDB1	6	bioid	Elzi DJ (2014)	1
PML	7	CREBBP	29	pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Matsuzaki K (2003), Matsuzaki K (2003), Matsuzaki K (2003), Doucas V (1999), Doucas V (1999), Zhong S (1999), Chen Y (2015)	7
ATXN3	2	SRI	1	affinity chromatography technology	Hein MY (2015)	1
CDKN1A	1	CDK4	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Selma Dagtas A (2010), Guidoboni M (2005), Santiago FS (2007), Santiago FS (2007), Hsu SP (2008), Kehn K (2004), Kokontis JM (1998), Orend G (1998), Zheleva DI (2002), Mandal M (1998), Chen J (1996), Chen J (1996), Ramachandran N (2004), Gorospe M (1996), Fogeron ML (2013), Hukkelhoven E (2012), Hukkelhoven E (2012), Hukkelhoven E (2012), Huttlin EL (2017), Roessig L (2001)	20
ATXN3	2	HAP1	1	affinity chromatography technology	Takeshita Y (2011)	1
RAD23A	1	CHEK1	2	affinity chromatography technology, affinity chromatography technology, pull down	Tan X (2015), Tan X (2015), Tan X (2015)	3
ATXN3	2	PRPS1	0	affinity chromatography technology	Kristensen LV (2018)	1
RAD23A	1	PSMC5	4	affinity chromatography technology, pull down	Scanlon TC (2009), Zhu Q (2004)	2
EWSR1	2	RAD23B	1	bioid	Elzi DJ (2014)	1
UBC	7	STUB1	4	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study	Connell P (2001), Connell P (2001), Windheim M (2008), Zhang M (2005)	4
ATXN3	2	CNOT6	2	affinity chromatography technology	Hein MY (2015)	1
PRKN	1	CUL1	7	affinity chromatography technology, pull down, affinity chromatography technology	Staropoli JF (2003), Staropoli JF (2003), Gong Y (2014)	3
UBQLN1	1	DNAJB2	0	pull down	Heir R (2006)	1
SDHA	2	SLC25A5	1	affinity chromatography technology	Malty RH (2017)	1
HSP90AA1	7	APP	1	affinity chromatography technology	Kumar P (2007)	1
UBC	7	CUL1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Matsumoto M (2005), Bennett EJ (2010), Bish RA (2007), Wu K (2016)	4
EP300	36	UBC	7	enzymatic study, affinity chromatography technology	Delvecchio M (2013), Kirilyuk A (2012)	2
ARFIP2	0	TRIM54	1	two hybrid	Rolland T (2014)	1
ATXN3	2	IBA57	0	affinity chromatography technology	Kristensen LV (2018)	1
UBAC2	1	TUBA1A	13	affinity chromatography technology	Christianson JC (2012)	1
EWSR1	2	RPLP0	1	bioid	Elzi DJ (2014)	1
VCP	6	HLA-A	0	affinity chromatography technology	Soetandyo N (2010)	1
TP53	0	UBC	7	affinity chromatography technology, affinity chromatography technology	Ayroldi E (2014), Ke JY (2014)	2
VCP	6	ANXA7	0	affinity chromatography technology	Yu CC (2013)	1
ATXN3	2	HSDL2	0	affinity chromatography technology	Kristensen LV (2018)	1
PSMC5	4	TUBB	3	biochemical	Havugimana PC (2012)	1
RPS6KA1	3	ATXN3	2	two hybrid	Vinayagam A (2011)	1
EWSR1	2	ARFIP2	0	bioid	Elzi DJ (2014)	1
HSPA8	4	HSPH1	0	affinity chromatography technology, affinity chromatography technology, biochemical	Taipale M (2014), Taipale M (2014), Wan C (2015)	3
VCP	6	SUMO1	0	affinity chromatography technology	Yu CC (2013)	1
NCOR1	9	ATXN3	2	affinity chromatography technology, pull down, pull down, affinity chromatography technology	Evert BO (2006), Evert BO (2006), Evert BO (2006), Evert BO (2006)	4
CREBBP	29	MDC1	8	affinity chromatography technology, affinity chromatography technology, pull down	Townsend K (2009), Townsend K (2009), Townsend K (2009)	3
DNM1L	3	VCP	6	affinity chromatography technology	Malty RH (2017)	1
ATXN3	2	RHOG	4	affinity chromatography technology	Kristensen LV (2018)	1
NDUFA4	0	SDHB	0	affinity chromatography technology	Floyd BJ (2016)	1
BAG3	4	UBE2L3	1	affinity chromatography technology, affinity chromatography technology	Chen Y (2013), Chen Y (2013)	2
RPS6KA1	3	NFKBIA	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study	Schouten GJ (1997), Schouten GJ (1997), Schouten GJ (1997), Ghoda L (1997), Ghoda L (1997), Ghoda L (1997), Heilker R (1999)	7
CDKN1A	1	TUBB	3	affinity chromatography technology	Fogeron ML (2013)	1
TRIM63	0	TRIM54	1	two hybrid, pull down	Centner T (2001), Centner T (2001)	2
UBE2L3	1	ATXN3	2	pull down	Durcan TM (2011)	1
DNAJB2	0	PJA1	1	affinity chromatography technology	Huttlin EL (2015)	1
ACLY	3	APP	1	pull down	Olah J (2011)	1
PRKN	1	UBE2S	2	pull down	Kazlauskaite A (2014)	1
ATXN3	2	HLA-A	0	affinity chromatography technology	Hein MY (2015)	1
UBQLN1	1	ATXN3	2	pull down	Heir R (2006)	1
ATXN3	2	PICK1	2	two hybrid	Lim J (2006)	1
BAG3	4	STUB1	4	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kristensen AR (2012), Taipale M (2014), Taipale M (2014), Hein MY (2015)	4
HDAC6	0	TUBB3	3	affinity chromatography technology	New M (2013)	1
BAG3	4	UBAC2	1	affinity chromatography technology	Hein MY (2015)	1
TP53	0	NFKBIA	0	affinity chromatography technology, two hybrid	Chang NS (2002), Chang NS (2002)	2
DNM1L	3	GSK3B	1	two hybrid, pull down	Hong YR (1998), Hong YR (1998)	2
SQSTM1	0	HDAC6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Tanji K (2012), Yan J (2013), Yan J (2013), Chen Q (2015)	4
UBC	7	NEDD8	0	affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography	Matsumoto M (2005), Bennett EJ (2010), Singh RK (2012), Singh RK (2012)	4
PJA1	1	OTUB2	0	enzymatic study	Loch CM (2012)	1
DDX39A	3	TUBB3	3	affinity chromatography technology	Huttlin EL (2017)	1
OTUB2	0	APP	1	pull down	Olah J (2011)	1
SQSTM1	0	UBC	7	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, unspecified method, x-ray crystallography, affinity chromatography technology, unspecified method, pull down, pull down, pull down, affinity chromatography technology, imaging technique, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, imaging technique, imaging technique, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique	Vinayagam A (2011), Vadlamudi RK (1996), Tanji K (2012), Matsumoto G (2011), Long J (2008), Long J (2008), Najat D (2009), Najat D (2009), Hocking LJ (2004), Boh BK (2011), Long J (2010), Seibenhener ML (2004), Seibenhener ML (2004), Seibenhener ML (2004), Fenner BJ (2009), Nathan JA (2013), Ciani B (2003), Shi J (2013), Goode A (2014), Bish RA (2007), Lu K (2014), Zhou L (2014), Zhou L (2014), Vadlamudi RK (1996), Long J (2008), Cavey JR (2006), Cavey JR (2006), Kirkin V (2009), Nakayasu ES (2013), Nakayasu ES (2013), Lim J (2015), Milan E (2015), Milan E (2015), Ordureau A (2015), Wurzer B (2015), Zhang X (2017), Wang L (2017), Liu X (2017), Peng H (2017), Donohue E (2014), Nibe Y (2017), Nibe Y (2017), Govindaraju VK (2017)	43
HDAC6	0	UBC	7	affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology	Pai MT (2007), Pozo FM (2011), Sekimoto T (2010), Kovacs JJ (2004), Hao R (2013), Lee JH (2013), Nakashima H (2014), Banerjee I (2014), Hao R (2013), Zhang X (2017), Yu Q (2018)	11
UBC	7	ALG1	2	pull down	Zhang X (2017)	1
SMURF1	4	XRCC6	3	affinity chromatography technology	Xie Y (2013)	1
HDAC6	0	STUB1	4	affinity chromatography technology	Cook C (2012)	1
CUL1	7	DNAJA1	2	affinity chromatography technology	Bennett EJ (2010)	1
PJA1	1	TK1	0	enzymatic study	Loch CM (2011)	1
UBC	7	PJA1	1	affinity chromatography technology	Matsumoto M (2005)	1
ATXN3	2	CANX	4	affinity chromatography technology	Hein MY (2015)	1
AMFR	2	ATXN3	2	affinity chromatography technology, imaging technique	Ying Z (2009), Ying Z (2009)	2
SMURF1	4	NEDD8	0	affinity chromatography technology, pull down	He S (2017), He S (2017)	2
ATXN3	2	ACOT9	0	affinity chromatography technology	Kristensen LV (2018)	1
RAD23A	1	UBQLN1	1	x-ray crystallography, affinity chromatography technology, biochemical	Kang Y (2007), Kang Y (2007), Wan C (2015)	3
ARHGDIA	3	RHOG	4	two hybrid	Faure J (2001)	1
HDAC6	0	ARHGDIA	3	enzymatic study	Kuhlmann N (2016)	1
ATXN3	2	HSPA8	4	affinity chromatography technology	Kristensen LV (2018)	1
VCP	6	UBE2S	2	affinity chromatography technology	Yu CC (2013)	1
MDC1	8	AMFR	2	two hybrid, affinity chromatography technology	Woods NT (2012), Woods NT (2012)	2
XRCC6	3	HDAC6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Subramanian C (2011), Chaudhary N (2014), Chaudhary N (2014)	3
STUB1	4	TRAF6	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Yang M (2011), Yang M (2011), Wang S (2013), Li S (2014), Li S (2014), Li S (2014), Li S (2014)	7
MDC1	8	SLC25A22	1	affinity chromatography technology	Woods NT (2012)	1
PRKN	1	PICK1	2	pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study	Joch M (2007), Joch M (2007), Joch M (2007), Joch M (2007)	4
BAG3	4	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gamerdinger M (2009), Gamerdinger M (2009), Chen Y (2013)	3
RAD23A	1	TRIM54	1	two hybrid	Rolland T (2014)	1
EP300	36	KAT2B	2	enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kiernan R (2003), Kim JH (2011), Lee M (2010), Santos-Rosa H (2003), Yang XJ (1996), Yang XJ (1996), Yang XJ (1996), Mizuguchi Y (2012)	8
CHEK1	2	TP53	0	affinity chromatography technology, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study	Tian H (2002), Sengupta S (2004), Tian H (2002), Goudelock DM (2003), Shieh SY (2000)	5
SMURF1	4	HSPA1A	0	affinity chromatography technology	Xie Y (2013)	1
ATXN3	2	RDH13	0	affinity chromatography technology	Kristensen LV (2018)	1
ANXA7	0	TP53	0	two hybrid	Vinayagam A (2011)	1
PRKN	1	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Imai Y (2003), Taipale M (2012), Zanon A (2013)	3
AMFR	2	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, affinity chromatography technology, two hybrid, pull down, unspecified method, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhong X (2004), Zhong X (2004), Lee JN (2008), Cao J (2007), Ballar P (2007), Ballar P (2007), Ye Y (2005), Ye Y (2005), Zhong X (2004), Yang H (2010), Yang H (2010), Ballar P (2010), Jo Y (2011), St-Pierre P (2012), Grelle G (2006), Scheich C (2007), Ballar P (2006), Haenzelmann P (2011), Haenzelmann P (2011), Haenzelmann P (2011), Wang Q (2011), Yu CC (2013), Erzurumlu Y (2013), Liu S (2013), Wang Q (2011), Grelle G (2006), Grelle G (2006), Grelle G (2006), Grelle G (2006), Christianson JC (2012), Zhang T (2015), Khodayari N (2017)	32
VCP	6	SLC3A2	5	affinity chromatography technology	Yu CC (2013)	1
PRKN	1	DNM1L	3	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Wang H (2011), Wang H (2011), Wang H (2011), Wang H (2011)	4
SYVN1	2	TP53	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, enzymatic study, affinity chromatography technology	Wu ZZ (2011), Wu ZZ (2011), Yamasaki S (2007), Yamasaki S (2007), Yamasaki S (2007), Yamasaki S (2007), Yamasaki S (2007), Namba T (2015)	8
PML	7	SQSTM1	0	affinity chromatography technology	Hein MY (2015)	1
RFFL	0	TP53	0	affinity chromatography technology, affinity chromatography technology	Yang W (2007), Yang W (2008)	2
SDHB	0	SLC25A22	1	biochemical	Havugimana PC (2012)	1
USP21	2	ATXN3	2	enzymatic study	Loch CM (2012)	1
C16orf70	4	APP	1	pull down	Olah J (2011)	1
CUL1	7	TUBB	3	affinity chromatography technology	Bennett EJ (2010)	1
PML	7	CUL1	7	affinity chromatography technology	Shima Y (2008)	1
TRIM55	2	SQSTM1	0	affinity chromatography technology, two hybrid	Lange S (2005), Witt CC (2008)	2
ATXN3	2	SFXN4	3	affinity chromatography technology	Kristensen LV (2018)	1
ASIC1	2	PICK1	2	affinity chromatography technology, two hybrid, affinity chromatography technology	Leonard AS (2003), Hruska-Hageman AM (2002), Hruska-Hageman AM (2002)	3
USP21	2	OTUB2	0	enzymatic study	Loch CM (2012)	1
UBC	7	PSMC5	4	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhu Q (2004), Zhang X (2017)	3
NEDD8	0	HSP90AA1	7	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	SDHB	0	affinity chromatography technology, affinity chromatography technology	Kristensen LV (2018), Kristensen LV (2018)	2
ATXN3	2	CSNK2B	5	affinity chromatography technology, enzymatic study	Tao RS (2008), Tao RS (2008)	2
TP53	0	STUB1	4	affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Muller P (2008), Stankiewicz M (2010), Tripathi V (2007), Tripathi V (2007), Esser C (2005), Lim JH (2011), Wang J (2011), Burch L (2004), Landre V (2013), Horikawa I (2014), Horikawa I (2014), Horikawa I (2014), Fraser JA (2015), Narayan V (2015), Yue X (2016), Parrales A (2016), Parrales A (2016)	17
UBC	7	SUMO1	0	affinity chromatography technology	Sahin U (2014)	1
DNM1L	3	HSPH1	0	affinity chromatography technology	Malty RH (2017)	1
HSP90AA1	7	CHEK1	2	affinity chromatography technology, pull down, affinity chromatography technology	Ha K (2011), Arlander SJ (2006), Taipale M (2012)	3
VCP	6	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Yu CC (2013), Fogeron ML (2013)	3
SDHA	2	SQSTM1	0	biochemical	Havugimana PC (2012)	1
DNM2	2	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
ATXN3	2	NDUFA8	1	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	ITCH	1	affinity chromatography technology, affinity chromatography technology	Chhangani D (2014), Chhangani D (2014)	2
SLC25A3	1	CANX	4	biochemical	Wan C (2015)	1
EP300	36	HDAC6	0	affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, pull down	Han Y (2009), Han Y (2009), Liu Y (2012), Kirilyuk A (2012), Girdwood D (2003)	5
CREBBP	29	CDKN1A	1	affinity chromatography technology, imaging technique	Fritah A (2005), Chen TC (2014)	2
HDAC3	5	NFKBIA	0	affinity chromatography technology	Gao Z (2006)	1
TUBA1A	13	SQSTM1	0	affinity chromatography technology	Seiberlich V (2012)	1
TUBB	3	TUBB3	3	affinity chromatography technology	Huttlin EL (2017)	1
CDKN1A	1	TRIM54	1	two hybrid	Rolland T (2014)	1
HSP90AA1	7	TUBA1A	13	affinity chromatography technology, affinity chromatography technology	Hu Y (2003), Skarra DV (2011)	2
SDHA	2	XRCC6	3	biochemical	Havugimana PC (2012)	1
TECR	0	CANX	4	biochemical	Wan C (2015)	1
HSP90AA1	7	DNAJA1	2	affinity chromatography technology	Skarra DV (2011)	1
TK1	0	TUBA1A	13	two hybrid	Vinayagam A (2011)	1
ATXN3	2	HSP90AA1	7	affinity chromatography technology	Liu H (2016)	1
ATXN3	2	TEX11	0	two hybrid	Lim J (2006)	1
CREB1	1	EP300	36	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, far western blotting, pull down	Hussain MA (1999), Magenta A (2003), Subbaramaiah K (2011), Solomou EE (2001), Subbaramaiah K (2012), Tung WH (2011), Tung WH (2011), Lundblad JR (1995), Lundblad JR (1995)	9
PRKN	1	RAD23B	1	affinity chromatography technology	Sarraf SA (2013)	1
PRKN	1	HSDL2	0	affinity chromatography technology	Zanon A (2013)	1
SDHA	2	PSMC5	4	affinity chromatography technology	Malty RH (2017)	1
NDUFA4	0	RDH13	0	affinity chromatography technology	Floyd BJ (2016)	1
ATXN3	2	ARHGAP19	4	two hybrid	Lim J (2006)	1
ATXN3	2	TIMM23	0	affinity chromatography technology	Hein MY (2015)	1
NDUFA4	0	NDUFA8	1	affinity chromatography technology	Floyd BJ (2016)	1
NCOR1	9	EP300	36	affinity chromatography technology	Cowger JJ (2006)	1
SDHA	2	CANX	4	affinity chromatography technology	Malty RH (2017)	1
TP53	0	DDB1	6	affinity chromatography technology	Fogeron ML (2013)	1
PML	7	HDAC3	5	affinity chromatography technology, pull down	Wu WS (2001), Wu WS (2001)	2
CREBBP	29	XRCC6	3	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study	Barlev NA (1998), Barlev NA (1998), Cohen HY (2004), Cohen HY (2004), Cohen HY (2004)	5
HAP1	1	HSPA1A	0	affinity chromatography technology, pull down	Mendez F (2000), Mendez F (2000)	2
PRKN	1	SLC25A3	1	affinity chromatography technology	Zanon A (2013)	1
SPRTN	0	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique	Ghosal G (2012), Ghosal G (2012), Davis EJ (2012), Davis EJ (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012)	8
APP	1	UBB	4	protein complementation assay	Kajiwara Y (2010)	1
UBAC2	1	UBC	7	pull down, pull down, pull down	Christianson JC (2012), Lloyd SJ (2013), Zhang X (2017)	3
TP53	0	SLC25A5	1	affinity chromatography technology	Horikawa I (2014)	1
PRKN	1	UBE2L3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down, pull down, pull down, pull down, pull down	Shimura H (2001), Imai Y (2000), Ramsey CP (2010), Sato S (2006), Chaugule VK (2011), Um JW (2012), Choi P (2003), Uchiki T (2009), Joch M (2007), Li Y (2011), Shin JH (2011), Chung KK (2001), Sato S (2006), Hampe C (2006), Um JW (2006), Chaugule VK (2011), Wang H (2011), Imam SZ (2011), Duda DM (2013), Wauer T (2013), Rankin CA (2014), Shimura H (2000), Durcan TM (2011), Wenzel DM (2011), Romani-Aumedes J (2014), Caulfield TR (2014), Koyano F (2014), Kurup PK (2015), Wauer T (2015), Song P (2016), Kumar A (2015), Lee SB (2015), Lee SB (2015), Song P (2016), Kazlauskaite A (2015), Veeriah S (2010), Park S (2017), Park S (2017), Kumar A (2017), Klosowiak JL (2016), Gersch M (2017), Tang MY (2017), Kazlauskaite A (2014), Sul JW (2013)	44
CDKN1A	1	UBB	4	affinity chromatography technology	Fogeron ML (2013)	1
CUL4A	2	EWSR1	2	affinity chromatography technology	Bennett EJ (2010)	1
ACLY	3	TUBB3	3	affinity chromatography technology	Zhang C (2016)	1
XRCC6	3	TP53	0	affinity chromatography technology, affinity chromatography technology	Feki A (2005), Feki A (2005)	2
TRIM54	1	ATXN3	2	enzymatic study	Loch CM (2012)	1
TRIM63	0	ATXN3	2	enzymatic study	Loch CM (2012)	1
SUMO1	0	TP53	0	two hybrid	Minty A (2000)	1
ATXN3	2	KCTD10	1	affinity chromatography technology	Sowa ME (2009)	1
SDHA	2	HLA-A	0	affinity chromatography technology	Malty RH (2017)	1
ATXN3	2	MGRN1	4	affinity chromatography technology, affinity chromatography technology	Chhangani D (2014), Chhangani D (2014)	2
HSP90AA1	7	TUBB	3	affinity chromatography technology	Skarra DV (2011)	1
ATXN3	2	SQSTM1	0	affinity chromatography technology, pull down	Zhou L (2014), Zhou L (2014)	2
PRKN	1	STUB1	4	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2002), Imai Y (2003), Zhu X (2017)	5
UBQLN1	1	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lim PJ (2009), Yu CC (2013), Lim PJ (2009), Lim PJ (2009)	4
APP	1	STUB1	4	affinity chromatography technology, affinity chromatography technology	Kumar P (2007), Kumar P (2007)	2
ATXN3	2	SERPINH1	2	affinity chromatography technology	Kristensen LV (2018)	1
RAD23A	1	RAD23B	1	biochemical, affinity chromatography technology	van der Spek PJ (1996), Hsieh HC (2005)	2
VCP	6	CSNK2B	5	affinity chromatography technology	Yu CC (2013)	1
HDAC6	0	DYNC1H1	41	affinity chromatography technology	Banerjee I (2014)	1
TK1	0	TP53	0	two hybrid, two hybrid	Stelzl U (2005), Vinayagam A (2011)	2
TRAF6	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sanz L (2000), Sanz L (2000), Nakamura K (2010), Kim JY (2009), Seibenhener ML (2004), Feng Y (2005), Martin P (2006), Martin P (2006), Geetha T (2012), Geetha T (2012), Linares JF (2013), Linares JF (2011), Linares JF (2015), Schimmack G (2017), Tsai WT (2016)	15
NDUFA4	0	SLC16A1	3	affinity chromatography technology	Floyd BJ (2016)	1
ACLY	3	TUBB	3	affinity chromatography technology	Zhang C (2016)	1
VCP	6	APP	1	affinity chromatography technology	Jang JK (2017)	1
SLC25A3	1	SDHB	0	biochemical	Wan C (2015)	1
RPLP0	1	HSPA8	4	biochemical	Wan C (2015)	1
CUL4A	2	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
UBC	7	KCTD10	1	affinity chromatography technology	Matsumoto M (2005)	1
SMURF1	4	ATXN3	2	enzymatic study	Andrews PS (2010)	1
HDAC6	0	ATXN3	2	pull down	Bonanomi M (2014)	1
ATXN3	2	HDAC3	5	affinity chromatography technology, pull down, pull down, affinity chromatography technology	Evert BO (2006), Evert BO (2006), Evert BO (2006), Evert BO (2006)	4
DNAJA1	2	HSPA8	4	pull down, affinity chromatography technology, affinity chromatography technology, biochemical	Meacham GC (1999), Taipale M (2014), Taipale M (2014), Wan C (2015)	4
ATXN3	2	UBB	4	affinity chromatography technology, affinity chromatography technology	Kristensen LV (2018), Kristensen LV (2018)	2
UBC	7	ACLY	3	pull down, affinity chromatography technology	Nathan JA (2013), Bish RA (2007)	2
HSPA8	4	UBC	7	two hybrid	Stelzl U (2005)	1
ATXN3	2	TECR	0	affinity chromatography technology	Kristensen LV (2018)	1
MAP3K1	4	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Islam MR (2010), Islam MR (2010), Chipps E (2015), Chipps E (2015), Chipps E (2015)	5
RPS6KA1	3	VCP	6	two hybrid	Vinayagam A (2011)	1
ATXN3	2	SLC25A10	0	affinity chromatography technology	Kristensen LV (2018)	1
PRKN	1	TUBA1A	13	affinity chromatography technology	Hampe C (2006)	1
SQSTM1	0	CUL1	7	affinity chromatography technology	Tanji K (2012)	1
DDX39A	3	TMCO1	0	biochemical	Wan C (2015)	1
ATXN3	2	PML	7	affinity chromatography technology, affinity chromatography technology	Chai Y (2001), Chai Y (2001)	2
ATXN3	2	SEH1L	1	affinity chromatography technology	Kristensen LV (2018)	1
NEDD8	0	TUBB	3	affinity chromatography technology	Bennett EJ (2010)	1
DNM1L	3	DYNC1H1	41	affinity chromatography technology	Malty RH (2017)	1
NDUFA8	1	HSDL2	0	biochemical	Wan C (2015)	1
ATXN3	2	ACLY	3	affinity chromatography technology	Kristensen LV (2018)	1
PML	7	SUMO1	0	two hybrid, imaging technique, fluorescent resonance energy transfe, two hybrid, two hybrid, two hybrid, affinity chromatography technology, pull down, pull down, x-ray crystallography, fluorescent resonance energy transfe, unspecified method, two hybrid, pull down	Lin DY (2002), Cuchet-Lourenco D (2011), Percherancier Y (2009), Cuchet-Lourenco D (2012), Stehmeier P (2009), Duprez E (1999), Shen TH (2006), Shen TH (2006), Saether T (2007), Cappadocia L (2015), Cappadocia L (2015), Cappadocia L (2015), Li C (2017), Li C (2017)	14
UBE4B	5	TP53	0	affinity chromatography technology, affinity chromatography technology, pull down, biochemical, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Wu H (2011), Wu H (2011), Wu H (2011), Wu H (2011), Wu H (2011), Zhang Y (2014), Du C (2016), Du C (2016), Du C (2016)	9
ATXN3	2	STUB1	4	affinity chromatography technology, pull down, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology	Scaglione KM (2011), Scaglione KM (2011), Scaglione KM (2011), Todi SV (2010), Todi SV (2010), Gao XC (2011), Todi SV (2009), Kristensen LV (2018), Kristensen LV (2018)	9
ATXN3	2	HSPH1	0	affinity chromatography technology, affinity chromatography technology	Kristensen LV (2018), Kristensen LV (2018)	2
ITCH	1	UBC	7	enzymatic study, unspecified method, enzymatic study, enzymatic study	Sheng Y (2012), Ernst A (2013), Maspero E (2013), Kristariyanto YA (2015)	4
ATXN3	2	ASIC1	2	two hybrid	Shen L (2005)	1
CDKN1A	1	EP300	36	pull down, affinity chromatography technology	Cazzalini O (2008), Cazzalini O (2008)	2
ATXN3	2	CISD2	0	affinity chromatography technology	Kristensen LV (2018)	1
GSK3B	1	BCL2L1	0	enzymatic study	Wang J (2012)	1
VCP	6	NFKBIA	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dai RM (1998), Dai RM (1998), Gao Y (2000), Hotta K (2013), Yu CC (2013), Li JM (2013), Li JM (2013), Schweitzer K (2016)	8
VCP	6	TUBB	3	affinity chromatography technology, biochemical	Fogeron ML (2013), Wan C (2015)	2
RFFL	0	OTUB2	0	enzymatic study	Loch CM (2012)	1
SMURF1	4	PRPS1	0	affinity chromatography technology	Xie Y (2013)	1
HDAC6	0	PML	7	affinity chromatography technology	Joshi P (2013)	1
CUL4A	2	VCP	6	affinity chromatography technology	Besten Wd (2012)	1
HSPA8	4	HSPA4L	1	affinity chromatography technology, affinity chromatography technology, biochemical	Taipale M (2014), Taipale M (2014), Wan C (2015)	3
PRKN	1	PSMC5	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Tsai YC (2003), Tsai YC (2003), Um JW (2010), Sarraf SA (2013)	4
TP53	0	EP300	36	pull down, genetic interference, pull down, enzymatic study, pull down, pull down, affinity chromatography technology, biochemical, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, unspecified method, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, pull down, imaging technique, affinity chromatography technology, enzymatic study, affinity chromatography technology, x-ray crystallography, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, enzymatic study, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, unspecified method, affinity chromatography technology, enzymatic study, unspecified method, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, pull down, enzymatic study, enzymatic study, x-ray crystallography, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, unspecified method	An W (2004), Pastorcic M (2000), Livengood JA (2002), Livengood JA (2002), Grossman SR (1998), Grossman SR (1998), Grossman SR (1998), Grossman SR (1998), Tang Y (2008), Wang H (2008), Valbuena A (2008), Shi D (2009), Vega FM (2004), Finlan L (2004), Groenroos E (2004), Zhao Y (2006), Roe JS (2006), Pedeux R (2005), Sekaric P (2007), Pan X (2009), Tang Y (2006), Sen GS (2011), Li Y (2012), Li Y (2012), Gillotin S (2010), Grossman SR (2003), Issaeva N (2004), Kitagawa M (2008), Sabbatini P (2002), Burge S (2009), Zilfou JT (2001), Issaeva N (2004), Issaeva N (2004), Feng H (2009), Feng H (2009), Lill NL (1997), Dornan D (2004), Dornan D (2004), Di Agostino S (2006), Wells M (2008), Fath DM (2006), Kobet E (2000), Costanzo A (2002), Kumazawa T (2011), Borger DR (2006), Cui D (2013), Borger DR (2006), Lee SJ (2013), Tang HY (2006), Lin C (2011), Choi WI (2014), Ding G (2013), Kim MK (2013), Ali A (2013), Wu G (2014), Mizuguchi Y (2012), Sinha S (2012), Sinha S (2012), Her YR (2013), Her YR (2013), Wu SY (2009), Wu SY (2009), Liu L (1999), Sakaguchi K (1998), Harrod R (2003), Gu W (1997), Teufel DP (2007), Mantovani F (2007), Mantovani F (2007), Dornan D (2003), Dornan D (2003), Dornan D (2003), Dornan D (2003), Dornan D (2003), MacPartlin M (2005), Mujtaba S (2004), Wang YH (2003), Chen H (1999), Tang Z (2013), Graczyk A (2013), Graczyk A (2013), Chan HM (2001), Thomas MC (2005), Miller Jenkins LM (2015), Miller Jenkins LM (2015), Koh DI (2014), Koh DI (2014), Koh DI (2014), Li H (2015), Chen LF (2005), Shi D (2016), Wright DG (2016), Zhang X (2016), Procopio MG (2015), Tong Q (2015)	95
GSK3B	1	HSP90AA1	7	enzymatic study	Muller P (2012)	1
CSNK2B	5	SDHA	2	two hybrid	Vinayagam A (2011)	1
PRKN	1	DNAJA1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2003), Zanon A (2013)	3
GSK3B	1	MAP3K1	4	affinity chromatography technology, pull down	Kim JW (2003), Kim JW (2003)	2
HDAC3	5	HSPA8	4	pull down	Guenther MG (2002)	1
HSP90AA1	7	RPLP0	1	affinity chromatography technology	Falsone SF (2005)	1
ATXN3	2	DNAJA1	2	affinity chromatography technology	Kristensen LV (2018)	1
STUB1	4	HSP90AA1	7	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, enzymatic study, biochemical, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, unspecified method, pull down	Zhang L (2007), Zhang M (2005), Tateishi Y (2004), Tateishi Y (2004), Connell P (2001), Ko HS (2009), Kumar P (2007), Kumar P (2007), Wang L (2011), Stankiewicz M (2010), Graf C (2010), Kundrat L (2010), Kundrat L (2010), Kundrat L (2010), Kundrat L (2010), Morishima Y (2008), Zhou P (2003), Zhang M (2008), Grelle G (2006), Kim SA (2005), Arndt V (2005), Muller P (2012), Burch L (2004), Burch L (2004), Jang KW (2011), Schuelke JP (2010), Wang Q (2012), Shimamoto S (2013), Shimamoto S (2013), Shimamoto S (2013), Gano JJ (2010), Skarra DV (2011), Yang SW (2013), Grelle G (2006), Grelle G (2006), Narayan V (2015)	36
DDX39A	3	TUBA1A	13	affinity chromatography technology	Huttlin EL (2015)	1
EWSR1	2	SUMO1	0	bioid	Elzi DJ (2014)	1
NDUFA4	0	MCU	1	affinity chromatography technology	Floyd BJ (2016)	1
KAT2B	2	TP53	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, two hybrid, enzymatic study, pull down, enzymatic study, enzymatic study, pull down, enzymatic study, enzymatic study, enzymatic study	Jin Y (2002), Wang H (2008), Zhao Y (2006), Roe JS (2006), Perez RE (2010), Tang Y (2006), Zhao LY (2003), Liu L (1999), Liu L (1999), Sakaguchi K (1998), Harrod R (2003), Harrod R (2003), MacPartlin M (2005), Chen H (1999), Kang H (2009)	15
VCP	6	SYVN1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, unspecified method, affinity chromatography technology, biochemical	Ballar P (2007), Schulze A (2005), Schulze A (2005), Schulze A (2005), Ye Y (2005), Ye Y (2005), Zhong X (2006), Fernandez-Saiz V (2010), Liu S (2013), Liu S (2013), Liu S (2013), Liu S (2013), Zhang T (2015), Hosokawa N (2016)	14
VCP	6	CDK4	2	affinity chromatography technology	Yu CC (2013)	1
CUL1	7	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Taipale M (2012)	2
ATXN3	2	RSF1	2	affinity chromatography technology	Hein MY (2015)	1
RAD23A	1	USP13	2	affinity chromatography technology	Scanlon TC (2009)	1
MGRN1	4	ITCH	1	affinity chromatography technology	Gunn TM (2012)	1
PSMC5	4	VCP	6	affinity chromatography technology	Braunstein I (2015)	1
BCL2L1	0	TP53	0	two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Vinayagam A (2011), Tang WH (2014), Saxena R (2016), Stegh AH (2010), Kim EM (2014)	5
EWSR1	2	CANX	4	bioid	Elzi DJ (2014)	1
UBB	4	UBQLN1	1	two hybrid	Rolland T (2014)	1
CUL4A	2	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Guerrero-Santoro J (2008), Guerrero-Santoro J (2008), Angers S (2006), Angers S (2006), Jin J (2006), Wang H (2006), Kapetanaki MG (2006), Matsuda N (2005), Hu J (2004), Hu J (2004), Hu J (2004), Ahn J (2010), Maddika S (2009), Fischer ES (2011), Tan L (2007), He YJ (2006), He YJ (2006), He YJ (2006), McCall CM (2008), McCall CM (2008), Shiyanov P (1999), Bennett EJ (2010), Gastaldello S (2012), Kanei-Ishii C (2012), Hodgson AJ (2012), Kulaksiz G (2005), Wu Z (2012), Wu Z (2012), Olma MH (2009), Olma MH (2009), Havugimana PC (2012), Rao F (2014), Wan C (2015), Liu Y (2015), Zha Z (2015), Mouysset J (2015), Gao J (2015), Yang Y (2016), Yang Y (2016), Scherer PC (2016), Eichner R (2016), Mo Y (2017), Mo Y (2017), Peng Z (2016), Higa LA (2006), Ohtake F (2007)	46
USP21	2	TRAF6	0	enzymatic study	Bremm A (2010)	1
HSPA8	4	BAG3	4	two hybrid, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology	Takayama S (1999), Takayama S (1999), Takayama S (1999), Gentilella A (2011), Hishiya A (2011), Chen Y (2013), Chen Y (2013), Taipale M (2014), Taipale M (2014), Rolland T (2014), Hein MY (2015)	11
ATXN3	2	HSPA4L	1	affinity chromatography technology	Kristensen LV (2018)	1
PRKN	1	APP	1	affinity chromatography technology, imaging technique	Rosen KM (2010), Lonskaya I (2012)	2
SPRTN	0	HSPA8	4	affinity chromatography technology	Mosbech A (2012)	1
SLC25A3	1	VCP	6	biochemical	Wan C (2015)	1
HDAC6	0	DNAJA1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), New M (2013), Hein MY (2015)	3
EP300	36	DDB1	6	affinity chromatography technology, affinity chromatography technology	Datta A (2001), Rapic-Otrin V (2002)	2
RAD23A	1	PRKN	1	enzymatic study, affinity chromatography technology	Scanlon TC (2009), Sarraf SA (2013)	2
TECR	0	SLC25A3	1	biochemical	Wan C (2015)	1
CHEK1	2	BCL2L1	0	enzymatic study	Wang J (2012)	1
NEDD8	0	CUL1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Norman JA (2006), Bennett EJ (2010), Bennett EJ (2010), Gastaldello S (2012)	4
TP53	0	EWSR1	2	affinity chromatography technology	Li Y (2012)	1
TP53	0	HSPA8	4	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Akakura S (2001), Kaur J (1996), Fogeron ML (2013), Horikawa I (2014), Matsumoto H (1994), Matsumoto H (1994), Karras GI (2017)	7
ATXN3	2	ARHGDIA	3	two hybrid	Shen L (2005)	1
GSK3B	1	CREB1	1	enzymatic study	Li B (2003)	1
NDUFA4	0	APP	1	pull down	Olah J (2011)	1
EWSR1	2	RSF1	2	bioid	Elzi DJ (2014)	1
NFKBIA	0	NCOR1	9	affinity chromatography technology	Aguilera C (2004)	1
STUB1	4	HSPA8	4	pull down, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, enzymatic study, x-ray crystallography, pull down, pull down, pull down, pull down, affinity chromatography technology, enzymatic study, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, unspecified method, affinity chromatography technology, x-ray crystallography, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, enzymatic study	Ballinger CA (1999), Ballinger CA (1999), Ballinger CA (1999), Tateishi Y (2004), Tateishi Y (2004), Jiang J (2001), Wang L (2011), Wang L (2011), Wang L (2011), Stankiewicz M (2010), Yang M (2011), Yang M (2011), Urushitani M (2004), Grelle G (2006), Kim SA (2005), Arndt V (2005), Alberti S (2004), Meacham GC (2001), Smith MC (2013), Smith MC (2013), Matsumura Y (2013), Spooner RA (2008), Taipale M (2014), Taipale M (2014), Heimdal K (2014), Grelle G (2006), Grelle G (2006), Kamynina E (2007), Zhang H (2015), Zhang H (2015), Zhang H (2015), Li P (2015), Guo Y (2016), Zhang H (2017), Pakdaman Y (2017)	35
PRKN	1	SLC25A1	2	affinity chromatography technology	Zanon A (2013)	1
EP300	36	EWSR1	2	two hybrid, bioid	Wang J (2011), Elzi DJ (2014)	2
SDHA	2	SERPINH1	2	affinity chromatography technology	Malty RH (2017)	1
ATXN3	2	SLC16A1	3	affinity chromatography technology	Kristensen LV (2018)	1
TP53	0	PML	7	affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Kurki S (2003), Kurki S (2003), Fogal V (2000), Fogal V (2000), Guo A (2000), Guo A (2000), Insinga A (2004), Chu Y (2011), Li Q (2011), Li Q (2011), Bernassola F (2005), Yang Q (2013), Yang Q (2013), Catalano A (2004), Chen TC (2014)	15
EWSR1	2	CREBBP	29	pull down, bioid	Araya N (2003), Elzi DJ (2014)	2
ATXN3	2	CUL1	7	affinity chromatography technology	Tu Y (2017)	1
SQSTM1	0	NCOR1	9	pull down	Pridgeon JW (2004)	1
TP53	0	RDH13	0	affinity chromatography technology	Fogeron ML (2013)	1
EP300	36	HDAC3	5	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down	Kadeppagari RK (2009), Gregoire S (2007), Gregoire S (2007), Sankar N (2008), Sankar N (2008)	5
HSP90AA1	7	RPS6KA1	3	affinity chromatography technology, affinity chromatography technology	Taipale M (2012), Varjosalo M (2013)	2
PSMC5	4	TP53	0	pull down, affinity chromatography technology, affinity chromatography technology, pull down	Zhu Q (2007), Zhu Q (2007), Kulikov R (2010), Kulikov R (2010)	4
ATXN3	2	BCL7C	0	affinity chromatography technology	Hein MY (2015)	1
SMURF1	4	TP53	0	affinity chromatography technology	Nie J (2010)	1
MALT1	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology	Martin P (2006), Martin P (2006)	2
TRAF6	0	APP	1	pull down	Olah J (2011)	1
CDKN1A	1	PSMC5	4	biochemical	Jin Y (2008)	1
TRIM55	2	OTUB2	0	enzymatic study	Loch CM (2012)	1
GSK3B	1	LPCAT1	1	enzymatic study	Zou C (2011)	1
TUBB	3	HSPA1A	0	biochemical	Kristensen AR (2012)	1
ATXN3	2	CUL4A	2	affinity chromatography technology, affinity chromatography technology	Tu Y (2017), Tu Y (2017)	2
ATXN3	2	SLC3A2	5	affinity chromatography technology	Hein MY (2015)	1
CREBBP	29	TP53	0	enzymatic study, pull down, genetic interference, pull down, enzymatic study, fluorescent resonance energy transfe, enzymatic study, affinity chromatography technology, imaging technique, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, affinity chromatography technology, unspecified method, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, enzymatic study, enzymatic study, pull down, x-ray crystallography, x-ray crystallography, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down	Ito A (2002), Livengood JA (2002), Livengood JA (2002), Giebler HA (2000), Tang Y (2008), Jenkins LM (2009), Shi D (2009), Zhao Y (2006), Saifudeen Z (2005), Scolnick DM (1997), Scolnick DM (1997), Gu W (1997), Gu W (1997), Matsuda S (2004), Pasqualucci L (2011), Lee SK (1999), Dai C (2011), Lee CW (2010), Ferreon JC (2009), Ruas JL (2010), Ruas JL (2010), Huang WC (2007), Huang WC (2007), Mujtaba S (2004), Mujtaba S (2004), Mujtaba S (2004), Mujtaba S (2004), Col E (2002), Jansma AL (2014), Jansma AL (2014), Krois AS (2016), Hasegawa K (2008), Huang X (2013), Huang X (2013), Piskacek M (2016)	35
TP53	0	TUBB	3	affinity chromatography technology, affinity chromatography technology	Fogeron ML (2013), Horikawa I (2014)	2
EWSR1	2	NCOR1	9	bioid	Elzi DJ (2014)	1
SMURF1	4	VCP	6	affinity chromatography technology	Xie Y (2013)	1
HSP90AA1	7	DYNC1H1	41	affinity chromatography technology	Gano JJ (2010)	1
CUL4A	2	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dias DC (2002), Bennett EJ (2010), Taipale M (2012)	3
USP13	2	ITCH	1	affinity chromatography technology	Sowa ME (2009)	1
ATXN3	2	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, biochemical, pull down, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doss-Pepe EW (2003), Wang Q (2008), Matsumoto M (2004), Matsumoto M (2004), Reina CP (2010), Zhong X (2006), Morreale G (2009), Fernandez-Saiz V (2010), Laco MN (2012), Laco MN (2012), Yu CC (2013), Liu S (2013), Yang H (2014), Yang H (2014), Yang H (2014), Liu H (2016), Pfeiffer A (2017), Tu Y (2017)	18
KAT2B	2	ACLY	3	affinity chromatography technology	Lin R (2013)	1
ITCH	1	UBE2L3	1	pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, pull down, enzymatic study, pull down, pull down	Wiesner S (2007), Ishihara T (2011), Scialpi F (2008), Bai Y (2004), Oberst A (2007), Mouchantaf R (2006), Rossi M (2005), Zhang P (2010), Anindya R (2007), Kathania M (2015), Kristariyanto YA (2015), Riling C (2015), Riling C (2015), Zhang W (2016)	14
HDAC6	0	TUBB	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhao Z (2010), Zhao Z (2010), New M (2013), Watson GW (2016)	4
VCP	6	CUL1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Besten Wd (2012), Zhang Z (2015)	3
MDC1	8	COA7	1	affinity chromatography technology	Woods NT (2012)	1
CDKN1A	1	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Abbas T (2008), Abbas T (2008), Gao J (2015)	3
SPRTN	0	ATXN3	2	affinity chromatography technology	Mosbech A (2012)	1
CUL1	7	CDKN1A	1	affinity chromatography technology	Yu ZK (1998)	1
CDKN1A	1	HDAC6	0	pull down	Garcia-Wilson E (2005)	1
ATXN3	2	HSPA1A	0	affinity chromatography technology, affinity chromatography technology	Kristensen LV (2018), Kristensen LV (2018)	2
SERPINH1	2	TP53	0	affinity chromatography technology	Wang H (2008)	1
AMFR	2	UBAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Christianson JC (2012), Christianson JC (2012), Christianson JC (2012), Zhang T (2015), Zhang T (2015)	5
DNAJB2	0	ATXN3	2	affinity chromatography technology	Gao XC (2011)	1
CUL1	7	DDB1	6	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Gastaldello S (2012)	2
ATXN3	2	EP300	36	pull down, affinity chromatography technology	Li F (2002), Li F (2002)	2
TK1	0	ATXN3	2	two hybrid	Vinayagam A (2011)	1
ATXN3	2	EWSR1	2	two hybrid	Lim J (2006)	1
CREBBP	29	SUMO1	0	x-ray crystallography, pull down	Diehl C (2016), Diehl C (2016)	2
ATXN3	2	SLC25A22	1	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	SUMO1	0	two hybrid, pull down	Shen L (2005), Pfeiffer A (2017)	2
ATXN3	2	MTHFD2	0	affinity chromatography technology	Kristensen LV (2018)	1
CISD2	0	APP	1	pull down	Olah J (2011)	1
PRKN	1	XRCC6	3	affinity chromatography technology	Zanon A (2013)	1
CUL4A	2	UBC	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Angers S (2006), Bennett EJ (2010), Olma MH (2009), Wu K (2016)	4
STUB1	4	SQSTM1	0	biochemical	Villella VR (2013)	1
CUL1	7	CHEK1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Liu S (2009), Huh J (2013), Zhang YW (2005)	3
BAG3	4	ALG1	2	affinity chromatography technology	Chen Y (2013)	1
GSK3B	1	TUBA1A	13	two hybrid	Vinayagam A (2011)	1
ATXN3	2	MGME1	1	affinity chromatography technology	Kristensen LV (2018)	1
RAD23B	1	KCTD10	1	affinity chromatography technology	Huttlin EL (2017)	1
NFKBIA	0	MALT1	1	affinity chromatography technology	Carvalho G (2010)	1
STUB1	4	VCP	6	affinity chromatography technology, pull down	Vij N (2006), Liu S (2013)	2
SUMO1	0	PRKN	1	affinity chromatography technology, affinity chromatography technology, pull down	Um JW (2006), Um JW (2006), Um JW (2006)	3
USP13	2	NEDD8	0	affinity chromatography technology	Sowa ME (2009)	1
XRCC6	3	DNM2	2	affinity chromatography technology	Hein MY (2015)	1
TP53	0	CDKN1A	1	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, imaging technique	Tian H (2002), Vinayagam A (2011), Kinyamu HK (2003), Giono LE (2007), Chen TC (2014)	5
TRIM63	0	OTUB2	0	enzymatic study	Loch CM (2012)	1
RAD23A	1	TP53	0	affinity chromatography technology, affinity chromatography technology	Brignone C (2004), Hsieh HC (2005)	2
NDUFA4	0	CISD2	0	affinity chromatography technology	Floyd BJ (2016)	1
ANXA7	0	SRI	1	biochemical, far western blotting, far western blotting	Brownawell AM (1997), Brownawell AM (1997), Brownawell AM (1997)	3
BAG3	4	SLC25A6	3	affinity chromatography technology	Hein MY (2015)	1
UBE2S	2	XRCC6	3	affinity chromatography technology	Hu L (2017)	1
ATXN3	2	UBAC2	1	affinity chromatography technology	Kristensen LV (2018)	1
BAG3	4	HDAC6	0	affinity chromatography technology	Chen Y (2013)	1
MDC1	8	TP53	0	affinity chromatography technology	Xu X (2003)	1
TP53	0	SQSTM1	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Di Lello P (2006), Horikawa I (2014), Kang JH (2016), Kang JH (2016)	4
PRKN	1	TP53	0	pull down, enzymatic study	Jung YY (2017), Jung YY (2017)	2
ITCH	1	SLC3A2	5	affinity chromatography technology	OConnor HF (2015)	1
TRIM54	1	OTUB2	0	enzymatic study, two hybrid	Loch CM (2012), Rolland T (2014)	2
KAT2B	2	ARHGDIA	3	enzymatic study	Kuhlmann N (2016)	1
NDUFA4	0	SLC25A10	0	affinity chromatography technology	Floyd BJ (2016)	1
SPRTN	0	UBB	4	affinity chromatography technology	Kim MS (2013)	1
RAD23A	1	CREBBP	29	two hybrid, pull down	Zhu Q (2001), Zhu Q (2001)	2
NDUFA4	0	SLC25A6	3	affinity chromatography technology	Floyd BJ (2016)	1
UBE2L3	1	UBE4B	5	biochemical	Havugimana PC (2012)	1
PNKP	3	XRCC6	3	affinity chromatography technology	Koch CA (2004)	1
BAG3	4	SLC25A5	1	affinity chromatography technology	Chen Y (2013)	1
CDKN1A	1	ATXN3	2	two hybrid	Vinayagam A (2011)	1
EP300	36	NFKBIA	0	affinity chromatography technology	Shin DH (2009)	1
MDC1	8	USP13	2	affinity chromatography technology, pull down, unspecified method	Li Y (2017), Li Y (2017), Li Y (2017)	3
GSK3B	1	TP53	0	affinity chromatography technology, two hybrid	Watcharasit P (2002), Vinayagam A (2011)	2
CHEK1	2	CDKN1A	1	affinity chromatography technology	Tian H (2002)	1
UBC	7	UBE2L3	1	affinity chromatography technology	Bish RA (2007)	1
USP13	2	AMFR	2	affinity chromatography technology, pull down, affinity chromatography technology	Liu Y (2014), Liu Y (2014), Liu Y (2014)	3
UBC	7	DNAJA1	2	affinity chromatography technology	Matsumoto M (2005)	1
PRKN	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, imaging technique	Sarraf SA (2013), Song P (2016), Song P (2016), Song P (2016), Song P (2016), Hou XO (2015), Geisler S (2014)	7
SMURF1	4	APP	1	pull down	Olah J (2011)	1
NDUFA4	0	NDUFAF2	0	affinity chromatography technology	Floyd BJ (2016)	1
USP21	2	UBE2S	2	enzymatic study	Bremm A (2010)	1
TRIM63	0	TRIM55	2	two hybrid, two hybrid	Centner T (2001), Witt CC (2008)	2
ANXA7	0	TUBA1A	13	two hybrid	Vinayagam A (2011)	1
UBE4B	5	UBQLN1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
TECR	0	HSPA8	4	biochemical	Wan C (2015)	1
SMURF1	4	TUBB	3	affinity chromatography technology	Xie Y (2013)	1
ATXN3	2	SLC25A1	2	affinity chromatography technology	Kristensen LV (2018)	1
UBE4B	5	STUB1	4	biochemical	Wan C (2015)	1
TRAF6	0	UBE2L3	1	pull down, pull down	Geetha T (2005), Babu JR (2005)	2
HSPA8	4	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down	Polanowska-Grabowska R (1997), Giommarelli C (2010), Gano JJ (2010), Skarra DV (2011), Wan C (2015), Sun L (2012)	6
CDKN1A	1	KAT2B	2	affinity chromatography technology, affinity chromatography technology	Dai M (2012), Dai M (2012)	2
HDAC6	0	GSK3B	1	affinity chromatography technology	Beurel E (2011)	1
TUBA1A	13	CHEK1	2	genetic interference	Srivas R (2016)	1
VCP	6	CANX	4	affinity chromatography technology, biochemical	Yu CC (2013), Wan C (2015)	2
CUL1	7	SLC25A6	3	affinity chromatography technology	Bennett EJ (2010)	1
UBE4B	5	RAD23A	1	pull down	Goh AM (2008)	1
CREBBP	29	EP300	36	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Crusselle-Davis VJ (2007), Dohda T (2004), Dohda T (2004)	3
STUB1	4	MALT1	1	affinity chromatography technology	Wang S (2013)	1
ATXN3	2	DYNC1H1	41	affinity chromatography technology	Tu Y (2017)	1
MAP3K1	4	NFKBIA	0	enzymatic study	Tu Z (2003)	1
PML	7	NCOR1	9	pull down, affinity chromatography technology, two hybrid, pull down	Khan MM (2001), Khan MM (2001), Khan MM (2001), Minucci S (2000)	4
CUL4A	2	SDHA	2	affinity chromatography technology	Bennett EJ (2010)	1
ANXA7	0	ATXN3	2	two hybrid	Vinayagam A (2011)	1
TP53	0	RMDN1	0	genetic interference	Xie L (2013)	1
CUL1	7	HSPA1A	0	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	C16orf70	4	two hybrid, affinity chromatography technology	Lim J (2006), Lim J (2006)	2
PRPS1	0	PRKN	1	affinity chromatography technology, affinity chromatography technology	Kemeny S (2012), Kemeny S (2012)	2
CDK4	2	APP	1	pull down	Olah J (2011)	1
ATXN3	2	NEDD8	0	two hybrid, two hybrid, pull down	Ferro A (2007), Ferro A (2007), Ferro A (2007)	3
EP300	36	XRCC6	3	enzymatic study	Cohen HY (2004)	1
HSP90AA1	7	CNOT6	2	affinity chromatography technology	Gano JJ (2010)	1
HSPA8	4	CREBBP	29	affinity chromatography technology	Du C (2017)	1
HLA-A	0	SYVN1	2	affinity chromatography technology	Burr ML (2011)	1
PJA1	1	ATXN3	2	enzymatic study	Loch CM (2012)	1
ATXN3	2	TMCO1	0	affinity chromatography technology	Hein MY (2015)	1
HSPA1A	0	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kaur J (1996), Fogeron ML (2013), Horikawa I (2014), Matsumoto H (1994), Matsumoto H (1994)	5
CREBBP	29	PSMC5	4	affinity chromatography technology	Koues OI (2008)	1
ATXN3	2	XRCC6	3	affinity chromatography technology	Li Y (2007)	1
UBE2S	2	APP	1	pull down	Olah J (2011)	1
NEDD8	0	HSPA1A	0	affinity chromatography technology	Bennett EJ (2010)	1
CDKN1A	1	HSPA1A	0	affinity chromatography technology	Fogeron ML (2013)	1
TUBA1A	13	ATXN3	2	pull down	Bonanomi M (2014)	1
HSPH1	0	DNAJA1	2	biochemical	Wan C (2015)	1
ATXN3	2	SDHA	2	affinity chromatography technology	Kristensen LV (2018)	1
CDKN1A	1	APP	1	pull down	Olah J (2011)	1
UBC	7	UBQLN1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, two hybrid, pull down, two hybrid, pull down, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology	Matsumoto M (2005), Ko HS (2004), Ko HS (2004), Sokratous K (2012), Raasi S (2005), Raasi S (2005), Massey LK (2004), Ko HS (2004), Ko HS (2004), Rolland T (2014), Castaneda CA (2013), Nakayasu ES (2013), Nakayasu ES (2013), Kristariyanto YA (2015), Kristariyanto YA (2015), Kurlawala Z (2017)	16
PNKP	3	ATXN3	2	protein complementation assay, imaging technique	Gao R (2015), Gao R (2015)	2
CUL1	7	EWSR1	2	affinity chromatography technology	Bennett EJ (2010)	1
TRAF6	0	VCP	6	affinity chromatography technology	Ewing RM (2007)	1
SPRTN	0	HSPA1A	0	affinity chromatography technology	Mosbech A (2012)	1
PML	7	TIMM23	0	affinity chromatography technology	Hein MY (2015)	1
DNM1L	3	UBE2L3	1	affinity chromatography technology	Malty RH (2017)	1
SLC25A3	1	TMCO1	0	biochemical	Wan C (2015)	1
ATXN3	2	ALG1	2	affinity chromatography technology	Kristensen LV (2018)	1
CSNK2B	5	NFKBIA	0	affinity chromatography technology, enzymatic study, affinity chromatography technology	Tsuchiya Y (2010), Taylor JA (1999), Taylor JA (1999)	3
VCP	6	TUBB3	3	biochemical	Wan C (2015)	1
SYVN1	2	UBAC2	1	affinity chromatography technology	Zhang T (2015)	1
NDUFA4	0	SLC25A1	2	affinity chromatography technology	Floyd BJ (2016)	1
UBC	7	RAD23B	1	affinity chromatography technology, x-ray crystallography, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Ryu KS (2003), Chen L (2006), Nathan JA (2013), Nathan JA (2013), Nakayasu ES (2013), Nakayasu ES (2013), Kristariyanto YA (2015), Zhang X (2017)	9
TRIM54	1	USP21	2	enzymatic study	Loch CM (2012)	1
TP53	0	DNAJA1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fogeron ML (2013), Horikawa I (2014), Parrales A (2016), Parrales A (2016)	4
PRKN	1	HSPA1A	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2002), Zanon A (2013)	4
STUB1	4	CDKN1A	1	affinity chromatography technology, affinity chromatography technology, enzymatic study	Biswas K (2017), Biswas K (2017), Biswas K (2017)	3
NEDD8	0	RPLP0	1	affinity chromatography technology	Bennett EJ (2010)	1
UBE2S	2	UBB	4	x-ray crystallography, enzymatic study	Lorenz S (2016), Lorenz S (2016)	2
TRAF6	0	ITCH	1	affinity chromatography technology	Shembade N (2008)	1
SMURF1	4	TUBA1A	13	affinity chromatography technology	Xie Y (2013)	1
HSPA8	4	VCP	6	affinity chromatography technology, biochemical, affinity chromatography technology	Vij N (2006), Havugimana PC (2012), Yu CC (2013)	3
SDHA	2	RAB21	0	affinity chromatography technology	Malty RH (2017)	1
CUL1	7	SLC25A5	1	affinity chromatography technology	Bennett EJ (2010)	1
UBE4B	5	VCP	6	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Matsumoto M (2004), Matsumoto M (2004), Boehm S (2011), Takahata M (2008), Morreale G (2009), Fernandez-Saiz V (2010), Fernandez-Saiz V (2010), Raman M (2015), Wang T (2016), Huttlin EL (2017)	10
NCOR1	9	CREBBP	29	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Cowger JJ (2006), Cowger JJ (2006), Cowger JJ (2006), Cowger JJ (2006)	4
USP13	2	TRIM63	0	two hybrid	McElhinny AS (2002)	1
VCP	6	HSPA1A	0	affinity chromatography technology	Yu CC (2013)	1
OTUB2	0	TRAF6	0	affinity chromatography technology, two hybrid	Li S (2010), Hayes SD (2012)	2
CDKN1A	1	TUBB3	3	two hybrid	Vinayagam A (2011)	1
DNM1L	3	ACLY	3	affinity chromatography technology	Malty RH (2017)	1
EP300	36	ARHGDIA	3	enzymatic study	Kuhlmann N (2016)	1
GSK3B	1	CAMSAP3	3	two hybrid	Vinayagam A (2011)	1
ITCH	1	HDAC6	0	affinity chromatography technology	OConnor HF (2015)	1
CAPN2	1	ATXN3	2	enzymatic study	Toonen LJ (2016)	1
EWSR1	2	RAD23A	1	two hybrid	Rual JF (2005)	1
PRKN	1	ATXN3	2	pull down, affinity chromatography technology, enzymatic study, enzymatic study, pull down, affinity chromatography technology, x-ray crystallography	Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Bai JJ (2013)	7
UBE2S	2	UBC	7	enzymatic study, pull down, x-ray crystallography, enzymatic study, enzymatic study	Bremm A (2010), Wickliffe KE (2011), Wickliffe KE (2011), Kelly A (2014), Michel MA (2017)	5
DNM1L	3	PSMC5	4	affinity chromatography technology	Malty RH (2017)	1
CREBBP	29	FOXO4	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Nasrin N (2000), van der Horst A (2004), van der Horst A (2004), Szypowska AA (2011)	4
AEBP2	1	ATXN3	2	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
TP53	0	UBB	4	affinity chromatography technology	Fogeron ML (2013)	1
CUL1	7	CDK4	2	affinity chromatography technology	Bennett EJ (2010)	1
RAD23A	1	VCP	6	affinity chromatography technology	Laco MN (2012)	1
CHEK1	2	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Leung-Pineda V (2009), Leung-Pineda V (2009), Huh J (2013), Williamson EA (2014)	4
ITCH	1	EWSR1	2	pull down	Ingham RJ (2005)	1
ATXN3	2	SLC27A4	2	affinity chromatography technology	Kristensen LV (2018)	1
USP13	2	KCTD10	1	affinity chromatography technology	Sowa ME (2009)	1
SMURF1	4	UBE2L3	1	pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down	Cao Y (2014), Xie P (2014), Anindya R (2007), Kristariyanto YA (2015), Zhang W (2016), Andrews PS (2010), He S (2017), Zhang Y (2017)	8
TUBA1A	13	TUBB3	3	biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2017)	2
ATXN3	2	COA7	1	affinity chromatography technology	Kristensen LV (2018)	1
UBC	7	HLA-A	0	affinity chromatography technology	Matsumoto M (2005)	1
CUL4A	2	SLC25A6	3	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	UBC	7	pull down, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, pull down, enzymatic study, pull down, x-ray crystallography, affinity chromatography technology, pull down, enzymatic study, pull down, enzymatic study, pull down, enzymatic study, enzymatic study, x-ray crystallography, pull down, imaging technique, enzymatic study, pull down	Winborn BJ (2008), Mao Y (2005), Berke SJ (2005), Matsumoto M (2005), Bremm A (2010), Nicastro G (2010), Nicastro G (2010), Donaldson KM (2003), Chai Y (2004), Chai Y (2004), Nathan JA (2013), Seki T (2013), Yang H (2014), Yang H (2014), Blount JR (2014), Evers MM (2013), Weeks SD (2011), Donaldson KM (2003), Winborn BJ (2008), Faggiano S (2015), Wauer T (2015), Satoh T (2014), Satoh T (2014), Zhang X (2017), Toonen LJA (2017), Toonen LJA (2017), Kwasna D (2018)	27
USP21	2	TP53	0	enzymatic study	Fernandez-Majada V (2016)	1
AMFR	2	SYVN1	2	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, genetic interference	Zhong Y (2011), Ballar P (2010), Zhang T (2015), Zhang T (2015), Zhang T (2015)	5
ATXN3	2	GCAT	3	affinity chromatography technology	Kristensen LV (2018)	1
PRKN	1	UBC	7	enzymatic study, imaging technique, enzymatic study, fluorescent resonance energy transfe, pull down, pull down, pull down, pull down, x-ray crystallography, imaging technique, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study, pull down, x-ray crystallography, enzymatic study	Kondapalli C (2012), Kane LA (2014), Kane LA (2014), Koyano F (2014), Zheng X (2013), Shiba-Fukushima K (2014), Shiba-Fukushima K (2014), Kumar A (2015), Kumar A (2015), Okatsu K (2015), Okatsu K (2015), Okatsu K (2015), Yamano K (2015), Fiesel FC (2015), Ordureau A (2015), Kazlauskaite A (2015), Kazlauskaite A (2015), Kumar A (2017), Kliza K (2017)	19
SMURF1	4	RAD23A	1	enzymatic study	Andrews PS (2010)	1
CUL4A	2	SLC25A5	1	affinity chromatography technology	Bennett EJ (2010)	1
SMURF1	4	UBQLN1	1	enzymatic study	Andrews PS (2010)	1
TP53	0	ITCH	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Abedini MR (2008), Saha A (2011), Saha A (2011)	3
KAT2B	2	HDAC3	5	pull down, affinity chromatography technology	Gregoire S (2007), Gregoire S (2007)	2
CHEK1	2	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Leung-Pineda V (2009), Liu S (2009), Huh J (2013), Zhang YW (2005)	4
DYNC1H1	41	CSNK2B	5	affinity chromatography technology	Watabe M (2011)	1
UBE2S	2	HSPA8	4	affinity chromatography technology	Hu L (2017)	1
RPS6KA1	3	CSNK2B	5	affinity chromatography technology	Varjosalo M (2013)	1
HSPA8	4	TUBB	3	biochemical	Wan C (2015)	1
USP13	2	TRIM55	2	two hybrid	McElhinny AS (2002)	1
GSK3B	1	EWSR1	2	affinity chromatography technology	Ewing RM (2007)	1
CDKN1A	1	TUBA1A	13	two hybrid, affinity chromatography technology	Vinayagam A (2011), Fogeron ML (2013)	2
BAG3	4	ACLY	3	biochemical	Kristensen AR (2012)	1
CUL4A	2	CUL1	7	biochemical	He YJ (2006)	1
TP53	0	TUBA1A	13	affinity chromatography technology	Fogeron ML (2013)	1
ATXN3	2	OTUB2	0	affinity chromatography technology	Sowa ME (2009)	1
FOXO4	0	ATXN3	2	affinity chromatography technology, affinity chromatography technology, imaging technique	Araujo J (2011), Araujo J (2011), Araujo J (2011)	3
SMURF1	4	PSMC5	4	affinity chromatography technology	Wang Y (2012)	1
NDUFA4	0	SFXN4	3	affinity chromatography technology	Floyd BJ (2016)	1
HSP90AA1	7	CANX	4	biochemical	Wan C (2015)	1
MDC1	8	LPCAT1	1	affinity chromatography technology	Woods NT (2012)	1
RAD23A	1	HSPA8	4	affinity chromatography technology	Chen L (2006)	1
STUB1	4	HSPA1A	0	pull down, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ballinger CA (1999), Ballinger CA (1999), Imai Y (2002), Havugimana PC (2012), Jinwal UK (2012), Yang SW (2013), Choi JR (2016), Schoenbuehler B (2016)	8
CUL4A	2	HSPA1A	0	affinity chromatography technology, affinity chromatography technology	Dias DC (2002), Bennett EJ (2010)	2
BAG3	4	ATXN3	2	affinity chromatography technology	Chen Y (2013)	1
NCOR1	9	CREB1	1	affinity chromatography technology	Catic A (2013)	1
PRKN	1	HSPA8	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2003), Zanon A (2013)	4
NCOR1	9	HDAC3	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, pull down, two hybrid, biochemical, affinity chromatography technology, two hybrid, affinity chromatography technology, pull down, two hybrid, imaging technique, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yoon HG (2003), Yoon HG (2003), Yoon HG (2003), Yoon HG (2003), Fischle W (2002), Fischle W (2002), Fischle W (2001), Zhang J (2002), Zhang J (2002), Zhang J (2002), Li J (2000), Li J (2000), Li J (2000), Li J (2000), Underhill C (2000), Alenghat T (2006), Jiang S (2006), Wen YD (2000), Wen YD (2000), Wen YD (2000), Liu XF (2004), Yoon HG (2005), Yoon HG (2005), Zhu P (2006), Bantscheff M (2011), Joshi P (2013)	26
ATXN3	2	SYVN1	2	affinity chromatography technology	Bernardi KM (2013)	1
ATXN3	2	APP	1	pull down	Olah J (2011)	1
MKNK1	0	CREBBP	29	two hybrid	Bandyopadhyay S (2010)	1
NEDD8	0	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	HSD17B11	1	affinity chromatography technology	Kristensen LV (2018)	1
TRAF6	0	SMURF1	4	genetic interference	Li S (2010)	1
TRIM55	2	ATXN3	2	enzymatic study	Loch CM (2012)	1
TP53	0	CDK4	2	fluorescent resonance energy transfe	Ivanov AA (2017)	1
PSMC5	4	TRAF6	0	affinity chromatography technology	Huttlin EL (2017)	1
NCOR1	9	CDKN1A	1	affinity chromatography technology	Thorne JL (2011)	1
PRKN	1	RPLP0	1	affinity chromatography technology	Zanon A (2013)	1
CREBBP	29	KAT2B	2	pull down, biochemical, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Tini M (2002), Cho H (1998), Cho H (1998), Cho H (1998), Korzus E (1998), Korzus E (1998), Korzus E (1998), Yang XJ (1996), Yang XJ (1996), Yang XJ (1996)	10
HSP90AA1	7	HSPA1A	0	pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology	Kanelakis KC (2002), Gano JJ (2010), Falsone SF (2005), Brychzy A (2003), Scholz GM (2001), Scholz GM (2001)	6
TRIM63	0	USP21	2	enzymatic study	Loch CM (2012)	1
NEDD8	0	EWSR1	2	affinity chromatography technology	Bennett EJ (2010)	1
DNAJB2	0	UBC	7	affinity chromatography technology, pull down, two hybrid	Westhoff B (2005), Fenner BJ (2009), Westhoff B (2005)	3
ATXN3	2	NDUFAF2	0	affinity chromatography technology	Hein MY (2015)	1
CREBBP	29	CREB1	1	affinity chromatography technology, two hybrid, pull down, x-ray crystallography, pull down, pull down, affinity chromatography technology, fluorescent resonance energy transfe, pull down, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, two hybrid, affinity chromatography technology, far western blotting, pull down, far western blotting, pull down, far western blotting, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shi Y (2004), Kim J (2005), Shimomura A (1996), Radhakrishnan I (1997), Radhakrishnan I (1997), Sano Y (1998), Sano Y (1998), Zor T (2002), Giebler HA (2000), Zhang Q (2000), Ernst P (2001), Ledo F (2002), Poon SL (2008), Best JL (2004), Best JL (2004), Chan EC (2010), Yang F (2006), Solomou EE (2001), Du K (1998), Venza I (2001), Lundblad JR (1995), Lundblad JR (1995), Arias J (1994), Chrivia JC (1993), Chrivia JC (1993), Shi Y (2004), Ramirez JA (2007), Sun HS (2003), Sun HS (2003), Wang Y (2016)	30
ATXN3	2	TUBB3	3	affinity chromatography technology	Tu Y (2017)	1
NFKBIA	0	CUL1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kawakami T (2001), Read MA (2000), Suzuki H (1999), Surjit M (2012), Furukawa M (2000), Furukawa M (2000)	6
ATXN3	2	MARCH5	0	affinity chromatography technology	Kristensen LV (2018)	1
ATXN3	2	GNPAT	2	affinity chromatography technology	Kristensen LV (2018)	1
GSK3B	1	ACLY	3	affinity chromatography technology	Ewing RM (2007)	1
ATXN3	2	CREBBP	29	pull down, affinity chromatography technology, affinity chromatography technology	Li F (2002), Li F (2002), Li Y (2007)	3
TRIM63	0	APP	1	pull down	Olah J (2011)	1
MALT1	1	TRAF6	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sun L (2004), Sun L (2004), Garrison JB (2009), Li Y (2013), Oeckinghaus A (2007), Oeckinghaus A (2007), Nie Z (2015), Liu Y (2012), Liu Y (2012)	9
MDC1	8	ATXN3	2	affinity chromatography technology, affinity chromatography technology	Pfeiffer A (2017), Pfeiffer A (2017)	2
CHEK1	2	XRCC6	3	affinity chromatography technology, affinity chromatography technology	Goudelock DM (2003), Goudelock DM (2003)	2
PSRC1	0	APP	1	pull down, pull down	Olah J (2011), Virok DP (2011)	2
ATXN3	2	TRAF6	0	enzymatic study	Bremm A (2010)	1
ATXN3	2	DNM1L	3	affinity chromatography technology	Kristensen LV (2018)	1
HSPA1A	0	DNAJA1	2	affinity chromatography technology	Hageman J (2011)	1
DNM1L	3	XRCC6	3	affinity chromatography technology	Malty RH (2017)	1
ATXN3	2	RAD23A	1	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Wang G (2000), Wang G (2000), Wang G (2000), Scanlon TC (2009), Lim J (2006), Laco MN (2012), Laco MN (2012), Ferro A (2007), Chen L (2006)	9
VCP	6	UBB	4	affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Fogeron ML (2013)	2
NEDD8	0	SDHA	2	affinity chromatography technology	Bennett EJ (2010)	1
TK1	0	CDK4	2	two hybrid	Vinayagam A (2011)	1
TUBB	3	ATXN3	2	pull down	Bonanomi M (2014)	1
ANXA7	0	CDK4	2	two hybrid	Vinayagam A (2011)	1
ATXN3	2	ARFIP2	0	affinity chromatography technology	Kristensen LV (2018)	1
DDB1	6	NEDD8	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Angers S (2006), Norman JA (2006), Bennett EJ (2010)	3
HSP90AA1	7	HSPH1	0	affinity chromatography technology	Falsone SF (2005)	1
TUBB	3	APP	1	pull down	Olah J (2011)	1
SPRTN	0	BCL7C	0	affinity chromatography technology	Hein MY (2015)	1
RPS6KA1	3	CREB1	1	bioid	Choi YH (2011)	1
DNAJA1	2	PSMC5	4	biochemical	Wan C (2015)	1
ACLY	3	SDHA	2	biochemical	Wan C (2015)	1
ATXN3	2	RAD23B	1	two hybrid, pull down, affinity chromatography technology, two hybrid, affinity chromatography technology	Wang G (2000), Wang G (2000), Reina CP (2010), Lim J (2006), Chen L (2006)	5
HDAC3	5	DDB1	6	affinity chromatography technology	Romani B (2016)	1
GSK3B	1	ATXN3	2	two hybrid, pull down, affinity chromatography technology, enzymatic study	Vinayagam A (2011), Fei E (2007), Fei E (2007), Fei E (2007)	4
ARHGDIA	3	EWSR1	2	affinity chromatography technology, bioid	Ewing RM (2007), Elzi DJ (2014)	2
ATXN3	2	RAB21	0	affinity chromatography technology	Kristensen LV (2018)	1
CDKN1A	1	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Abbas T (2008), Abbas T (2008), Nishitani H (2008), Fogeron ML (2013)	4
ATXN3	2	MCU	1	affinity chromatography technology	Kristensen LV (2018)	1
SPRTN	0	UBC	7	pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, pull down	Machida Y (2012), Machida Y (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012), Centore RC (2012), Davis EJ (2012)	7
CREBBP	29	RPS6KA1	3	affinity chromatography technology, affinity chromatography technology	Fang X (2005), Wang Z (2003)	2
TK1	0	APP	1	pull down	Olah J (2011)	1
ATXN3	2	KAT2B	2	pull down, affinity chromatography technology	Li F (2002), Li F (2002)	2
ATXN3	2	UBE4B	5	pull down	Matsumoto M (2004)	1
HSPA8	4	CDK4	2	affinity chromatography technology, affinity chromatography technology	Jose-Eneriz ES (2008), Jose-Eneriz ES (2008)	2
NFKBIA	0	ATXN3	2	affinity chromatography technology	Hein MY (2015)	1
STUB1	4	HSPA4L	1	affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014)	2
ANXA7	0	TUBB3	3	two hybrid	Vinayagam A (2011)	1
HSPA4L	1	DNAJA1	2	biochemical	Wan C (2015)	1
ATXN3	2	BCL2L1	0	affinity chromatography technology, affinity chromatography technology	Zhou L (2013), Zhou L (2013)	2
HDAC6	0	TUBA1A	13	enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (2003), Matsuyama A (2002), Hubbert C (2002), Zhao Z (2010), Zhao Z (2010), New M (2013)	6
RAD23A	1	SQSTM1	0	two hybrid, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Rual JF (2005), Scanlon TC (2009)	3
ATXN3	2	CAMSAP3	3	affinity chromatography technology	Hein MY (2015)	1
TOMM20L	2	ATXN3	2	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
TRAF6	0	CANX	4	biochemical	Xie JJ (2013)	1
BAG3	4	HSP90AA1	7	affinity chromatography technology	Chen Y (2013)	1
TP53	0	IDH3B	0	affinity chromatography technology	Fogeron ML (2013)	1
SDHA	2	SDHB	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
USP13	2	ACLY	3	affinity chromatography technology	Han C (2016)	1
PML	7	CSNK2B	5	affinity chromatography technology	Sivachandran N (2010)	1
MAP3K1	4	ATXN3	2	enzymatic study	Charlaftis N (2014)	1
SDHA	2	SLC25A3	1	affinity chromatography technology	Malty RH (2017)	1
BCL2L1	0	PRKN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Hollville E (2014), Hollville E (2014), Gong Y (2017), Gong Y (2017), Gong Y (2017)	5
AMFR	2	CANX	4	affinity chromatography technology	Jo Y (2011)	1
BAG3	4	HSPA1A	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doong H (2000), Antoku K (2001), Chen Y (2013), Hein MY (2015)	4
VCP	6	CDKN1A	1	affinity chromatography technology	Yu CC (2013)	1
NEDD8	0	KCTD10	1	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	NDUFA4	0	affinity chromatography technology, affinity chromatography technology	Kristensen LV (2018), Kristensen LV (2018)	2
USP13	2	VCP	6	pull down, affinity chromatography technology	Liu Y (2014), Liu Y (2014)	2
HSPA1A	0	PSMC5	4	pull down	Hjerpe R (2016)	1
RAD23B	1	UBE4B	5	affinity chromatography technology	Huttlin EL (2017)	1
PRKN	1	MARCH5	0	affinity chromatography technology	Sarraf SA (2013)	1
DND1	0	ATXN3	2	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
ATXN3	2	RMDN1	0	affinity chromatography technology	Kristensen LV (2018)	1
PRPS1	0	UBB	4	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
DNM2	2	ATXN3	2	two hybrid	Vinayagam A (2011)	1
UBC	7	RPLP0	1	affinity chromatography technology	Matsumoto M (2005)	1
TP53	0	RPLP0	1	affinity chromatography technology, affinity chromatography technology	Fogeron ML (2013), Horikawa I (2014)	2
HSP90AA1	7	CDKN1A	1	affinity chromatography technology	Jascur T (2005)	1
SQSTM1	0	TRIM63	0	two hybrid, two hybrid	Lange S (2005), Witt CC (2008)	2
EWSR1	2	HDAC3	5	two hybrid	Ravasi T (2010)	1
DNM1L	3	DNAJA1	2	affinity chromatography technology	Malty RH (2017)	1
NDUFA4	0	SLC25A3	1	affinity chromatography technology	Floyd BJ (2016)	1
HDAC6	0	HSPA8	4	affinity chromatography technology, affinity chromatography technology	New M (2013), Watson GW (2016)	2
DNAJB2	0	HSPA8	4	affinity chromatography technology	Westhoff B (2005)	1
SMURF1	4	SLC25A3	1	affinity chromatography technology	Xie Y (2013)	1
CHEK1	2	APP	1	pull down	Olah J (2011)	1
EWSR1	2	BAG3	4	bioid	Elzi DJ (2014)	1
CSNK2B	5	CDKN1A	1	pull down	Goetz C (2000)	1
CUL4A	2	NEDD8	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dias DC (2002), Angers S (2006), Norman JA (2006), Bennett EJ (2010), Bennett EJ (2010), Gastaldello S (2012), Olma MH (2009)	7
EP300	36	UBQLN1	1	two hybrid	Wang J (2011)	1
HDAC6	0	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Kekatpure VD (2009), Rao R (2008), Bali P (2005), Kovacs JJ (2005), New M (2013), Rao R (2012), Kovacs JJ (2005)	7
HDAC3	5	TUBA1A	13	biochemical	Havugimana PC (2012)	1
ARFIP2	0	APP	1	pull down	Olah J (2011)	1
PRKN	1	SLC25A5	1	affinity chromatography technology	Zanon A (2013)	1
SPRTN	0	DYNC1H1	41	affinity chromatography technology	Kim MS (2013)	1
KAT2B	2	XRCC6	3	enzymatic study	Cohen HY (2004)	1
SMURF1	4	HSPA8	4	affinity chromatography technology	Xie Y (2013)	1
PNKP	3	APP	1	pull down	Olah J (2011)	1
CUL1	7	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
USP21	2	UBC	7	enzymatic study, enzymatic study, pull down, enzymatic study, enzymatic study, unspecified method, enzymatic study, enzymatic study, pull down, enzymatic study	Bremm A (2010), Faesen AC (2011), Ye Y (2011), Urbe S (2012), Loch CM (2012), Ernst A (2013), Ye Y (2011), Wauer T (2015), Leung I (2016), Michel MA (2017)	10
MAP3K1	4	DNAJB2	0	enzymatic study	Charlaftis N (2014)	1
ATXN3	2	CREB1	1	affinity chromatography technology, affinity chromatography technology	Chai Y (2001), Chai Y (2001)	2
DNAJB2	0	UBB	4	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CDKN1A	1	HSPA8	4	affinity chromatography technology	Fogeron ML (2013)	1
TUBA1A	13	UBC	7	affinity chromatography technology	Seiberlich V (2012)	1
APP	1	SYVN1	2	affinity chromatography technology, enzymatic study	Kaneko M (2010), Kaneko M (2010)	2
CUL1	7	SDHA	2	affinity chromatography technology	Bennett EJ (2010)	1
ATXN3	2	UBE2S	2	enzymatic study	Bremm A (2010)	1
TP53	0	NCOR1	9	affinity chromatography technology, imaging technique	Dohi Y (2008), Ali A (2013)	2