PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000539261	[[15034114, 15035214], [15035905, 15035981], [15037146, 15037179], [15038664, 15038860]]	[[15035072, 15035214], [15035905, 15035981], [15037146, 15037179], [15038664, 15038725]]
ENST00000545199	[[15034824, 15035214], [15037146, 15037179]]	[[15035023, 15035214], [15037146, 15037179]]
ENST00000228938	[[15034831, 15035214], [15035905, 15035981], [15037146, 15037179], [15037746, 15037821], [15038664, 15038791]]	[[15035072, 15035214], [15035905, 15035981], [15037146, 15037179], [15037746, 15037821], [15038664, 15038725]]
ENST00000507170	[[15035987, 15037179], [15038664, 15038788]]	None
NM_001190839	[[15033797, 15035214], [15035905, 15035981], [15037146, 15037179], [15037746, 15037821], [15038664, 15038996]]	[[15035072, 15035214], [15035905, 15035981], [15037146, 15037179], [15037746, 15037821], [15038664, 15038725]]
NM_000900	[[15033797, 15035214], [15035905, 15035981], [15037146, 15037179], [15038664, 15038996]]	[[15035072, 15035214], [15035905, 15035981], [15037146, 15037179], [15038664, 15038725]]

Promoter

Chrom	Start	End	Description
chr12	15038779	15038798	CAGE_peak_1_at_MGP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I014944	14944375	14945168	0.2	[{'connected_gene': 'PDE6H', 'score': 17.7}, {'connected_gene': 'HIST4H4', 'score': 10.33}, {'connected_gene': 'ENSG00000256339', 'score': 10.27}, {'connected_gene': 'MGP', 'score': 10.17}, {'connected_gene': 'C12orf60', 'score': 10.05}, {'connected_gene': 'ERP27', 'score': 4.81}, {'connected_gene': 'ARHGDIB', 'score': 0.37}]
chr12	GH12I014930	14930447	14930467	0.31	[{'connected_gene': 'MGP', 'score': 10.61}, {'connected_gene': 'C12orf60', 'score': 10.46}, {'connected_gene': 'PDE6H', 'score': 10.01}, {'connected_gene': 'ERP27', 'score': 0.44}, {'connected_gene': 'GC12M014903', 'score': 0.34}]
chr12	GH12I014883	14883386	14886556	1.92	[{'connected_gene': 'MGP', 'score': 550.77}, {'connected_gene': 'ENSG00000256339', 'score': 36.62}, {'connected_gene': 'ERP27', 'score': 29.78}, {'connected_gene': 'PDE6H', 'score': 15.64}, {'connected_gene': 'ART4', 'score': 11.51}, {'connected_gene': 'SMCO3', 'score': 10.51}, {'connected_gene': 'ARHGDIB', 'score': 10.39}, {'connected_gene': 'HIST4H4', 'score': 10.36}, {'connected_gene': 'H2AFJ', 'score': 10.36}, {'connected_gene': 'WBP11', 'score': 10.14}, {'connected_gene': 'C12orf60', 'score': 10.11}, {'connected_gene': 'GC12M014862', 'score': 0.39}]
chr12	GH12I014999	14999507	14999684	0.38	[{'connected_gene': 'ART4', 'score': 11.73}, {'connected_gene': 'PDE6H', 'score': 11.34}, {'connected_gene': 'ENSG00000256339', 'score': 11.12}, {'connected_gene': 'ARHGDIB', 'score': 11.11}, {'connected_gene': 'ERP27', 'score': 10.53}, {'connected_gene': 'SMCO3', 'score': 10.49}, {'connected_gene': 'C12orf60', 'score': 9.95}, {'connected_gene': 'MGP', 'score': 9.69}, {'connected_gene': 'LINC01489', 'score': 0.77}, {'connected_gene': 'LOC105369670', 'score': 0.44}]
chr12	GH12I014931	14931507	14932649	0.2	[{'connected_gene': 'ART4', 'score': 11.47}, {'connected_gene': 'HIST4H4', 'score': 11.04}, {'connected_gene': 'MGP', 'score': 10.79}, {'connected_gene': 'C12orf60', 'score': 10.65}, {'connected_gene': 'PDE6H', 'score': 10.29}, {'connected_gene': 'ENSG00000256339', 'score': 9.51}, {'connected_gene': 'ERP27', 'score': 0.44}, {'connected_gene': 'GC12M014903', 'score': 0.31}]
chr12	GH12I014945	14945763	14964864	2.65	[{'connected_gene': 'ARHGDIB', 'score': 572.66}, {'connected_gene': 'ERP27', 'score': 16.91}, {'connected_gene': 'PDE6H', 'score': 16.09}, {'connected_gene': 'WBP11', 'score': 12.28}, {'connected_gene': 'ART4', 'score': 11.35}, {'connected_gene': 'HIST4H4', 'score': 10.69}, {'connected_gene': 'H2AFJ', 'score': 10.69}, {'connected_gene': 'SMCO3', 'score': 10.41}, {'connected_gene': 'C12orf60', 'score': 10.32}, {'connected_gene': 'ENSG00000256339', 'score': 10.26}, {'connected_gene': 'MGP', 'score': 10.15}, {'connected_gene': 'PLBD1', 'score': 2.18}, {'connected_gene': 'LOC105369670', 'score': 0.29}]
chr12	GH12I013980	13980410	13980469	0.68	[{'connected_gene': 'GRIN2B', 'score': 550.77}, {'connected_gene': 'MGP', 'score': 4.81}, {'connected_gene': 'GC12P013958', 'score': 0.34}]
chr12	GH12I014976	14976696	14976969	0.59	[{'connected_gene': 'ERP27', 'score': 9.91}, {'connected_gene': 'ENSG00000256339', 'score': 9.77}, {'connected_gene': 'WBP11', 'score': 9.69}, {'connected_gene': 'C12orf60', 'score': 9.68}, {'connected_gene': 'MGP', 'score': 9.65}, {'connected_gene': 'SMCO3', 'score': 9.48}, {'connected_gene': 'PDE6H', 'score': 5.89}, {'connected_gene': 'PLBD1', 'score': 2.59}, {'connected_gene': 'GC12P014973', 'score': 0.77}, {'connected_gene': 'GC12P014974', 'score': 0.77}, {'connected_gene': 'LOC105369670', 'score': 0.39}]
chr12	GH12I014940	14940516	14942993	0.38	[{'connected_gene': 'ERP27', 'score': 47.51}, {'connected_gene': 'PDE6H', 'score': 19.7}, {'connected_gene': 'HIST4H4', 'score': 10.33}, {'connected_gene': 'ENSG00000256339', 'score': 10.27}, {'connected_gene': 'MGP', 'score': 10.17}, {'connected_gene': 'C12orf60', 'score': 10.05}, {'connected_gene': 'ARHGDIB', 'score': 0.37}]
chr12	GH12I014927	14927767	14930181	1.3	[{'connected_gene': 'ERP27', 'score': 612.86}, {'connected_gene': 'MGP', 'score': 11.27}, {'connected_gene': 'C12orf60', 'score': 11.12}, {'connected_gene': 'ARHGDIB', 'score': 10.98}, {'connected_gene': 'PDE6H', 'score': 10.22}, {'connected_gene': 'ENSG00000256339', 'score': 10.15}, {'connected_gene': 'GC12M014903', 'score': 0.34}]
chr12	GH12I014937	14937141	14939817	1.42	[{'connected_gene': 'ERP27', 'score': 598.24}, {'connected_gene': 'ARHGDIB', 'score': 11.43}, {'connected_gene': 'PDE6H', 'score': 10.95}, {'connected_gene': 'HIST4H4', 'score': 10.33}, {'connected_gene': 'ENSG00000256339', 'score': 10.28}, {'connected_gene': 'MGP', 'score': 10.18}, {'connected_gene': 'C12orf60', 'score': 10.05}, {'connected_gene': 'GC12M014903', 'score': 0.29}]
chr12	GH12I015001	15001687	15002394	0.31	[{'connected_gene': 'LINC01489', 'score': 550.77}, {'connected_gene': 'ART4', 'score': 12.04}, {'connected_gene': 'PDE6H', 'score': 10.92}, {'connected_gene': 'ENSG00000256339', 'score': 10.71}, {'connected_gene': 'ARHGDIB', 'score': 10.63}, {'connected_gene': 'SMCO3', 'score': 10.28}, {'connected_gene': 'H2AFJ', 'score': 10.16}, {'connected_gene': 'HIST4H4', 'score': 10.16}, {'connected_gene': 'MGP', 'score': 10.11}, {'connected_gene': 'C12orf60', 'score': 10.1}, {'connected_gene': 'GC12M015095', 'score': 0.16}]
chr12	GH12I015000	15000087	15000236	0.31	[{'connected_gene': 'LINC01489', 'score': 550.77}, {'connected_gene': 'ART4', 'score': 11.73}, {'connected_gene': 'PDE6H', 'score': 11.34}, {'connected_gene': 'ENSG00000256339', 'score': 11.12}, {'connected_gene': 'ARHGDIB', 'score': 11.11}, {'connected_gene': 'ERP27', 'score': 10.53}, {'connected_gene': 'SMCO3', 'score': 10.49}, {'connected_gene': 'C12orf60', 'score': 9.95}, {'connected_gene': 'MGP', 'score': 9.69}, {'connected_gene': 'LOC105369670', 'score': 0.39}]