PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000332272	[[75510948, 75513742], [75515714, 75515789], [75528837, 75528926]]	[[75512538, 75513726]]
ENST00000390664	[[75512325, 75513742], [75515714, 75515789], [75524511, 75524667], [75528837, 75529282]]	[[75512538, 75513726]]
NM_021615	[[75507021, 75513742], [75515714, 75515789], [75528837, 75528926]]	[[75512538, 75513726]]

Promoter

Chrom	Start	End	Description
chr16	75529273	75529293	CAGE_peak_2_at_CHST6_5end
chr16	75529294	75529376	CAGE_peak_1_at_CHST6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I075241	75241682	75259230	2.56	[{'connected_gene': 'BCAR1', 'score': 564.23}, {'connected_gene': 'ENSG00000280152', 'score': 550.77}, {'connected_gene': 'ENSG00000261079', 'score': 15.85}, {'connected_gene': 'NPIPB15', 'score': 13.07}, {'connected_gene': 'ENSG00000259972', 'score': 12.21}, {'connected_gene': 'ADAT1', 'score': 12.02}, {'connected_gene': 'WDR59', 'score': 10.27}, {'connected_gene': 'ENSG00000260884', 'score': 10.13}, {'connected_gene': 'ENSG00000261783', 'score': 8.3}, {'connected_gene': 'FA2H', 'score': 1.96}, {'connected_gene': 'CHST6', 'score': 1.48}, {'connected_gene': 'LOC105371344', 'score': 0.44}]
chr16	GH16I075495	75495092	75495782	1.16	[{'connected_gene': 'CHST6', 'score': 550.77}, {'connected_gene': 'ADAT1', 'score': 5.04}, {'connected_gene': 'ENSG00000273971', 'score': 0.77}, {'connected_gene': 'ENSG00000203472', 'score': 0.37}]
chr16	GH16I075492	75492083	75492172	0.7	[{'connected_gene': 'CHST6', 'score': 0.77}, {'connected_gene': 'ENSG00000203472', 'score': 0.37}]
chr16	GH16I075494	75494883	75495072	0.51	[{'connected_gene': 'CHST6', 'score': 550.77}, {'connected_gene': 'ENSG00000203472', 'score': 0.37}]
chr16	GH16I075534	75534775	75536631	0.4	[{'connected_gene': 'CHST5', 'score': 558.36}, {'connected_gene': 'ADAT1', 'score': 35.72}, {'connected_gene': 'CHST6', 'score': 12.05}, {'connected_gene': 'GABARAPL2', 'score': 11.98}, {'connected_gene': 'PIR47522', 'score': 0.77}, {'connected_gene': 'ENSG00000260092', 'score': 0.44}]
chr16	GH16I075516	75516013	75518012	1.76	[{'connected_gene': 'LOC100420067', 'score': 550.77}, {'connected_gene': 'ADAT1', 'score': 52.65}, {'connected_gene': 'TMEM231', 'score': 13.73}, {'connected_gene': 'RFWD3', 'score': 13.38}, {'connected_gene': 'CHST6', 'score': 12.23}, {'connected_gene': 'GABARAPL2', 'score': 11.19}, {'connected_gene': 'KARS', 'score': 9.92}, {'connected_gene': 'CHST5', 'score': 0.37}]
chr16	GH16I075482	75482833	75487449	1.08	[{'connected_gene': 'ENSG00000261783', 'score': 27.1}, {'connected_gene': 'BCAR1', 'score': 14.61}, {'connected_gene': 'RFWD3', 'score': 12.54}, {'connected_gene': 'CHST5', 'score': 11.77}, {'connected_gene': 'TMEM231', 'score': 11.73}, {'connected_gene': 'ADAT1', 'score': 10.21}, {'connected_gene': 'TMEM170A', 'score': 6.3}, {'connected_gene': 'ENSG00000203472', 'score': 0.44}, {'connected_gene': 'CHST6', 'score': 0.39}]
chr16	GH16I075471	75471363	75473237	1.07	[{'connected_gene': 'ENSG00000261783', 'score': 30.67}, {'connected_gene': 'WDR59', 'score': 12.93}, {'connected_gene': 'CHST6', 'score': 12.39}, {'connected_gene': 'CHST5', 'score': 12.05}, {'connected_gene': 'TMEM231', 'score': 12.01}, {'connected_gene': 'ENSG00000252122', 'score': 10.97}, {'connected_gene': 'GABARAPL2', 'score': 10.8}, {'connected_gene': 'CFDP1', 'score': 10.21}, {'connected_gene': 'ENSG00000203472', 'score': 0.77}, {'connected_gene': 'TMEM170A', 'score': 0.44}]
chr16	GH16I075420	75420543	75421887	1.24	[{'connected_gene': 'ENSG00000261783', 'score': 22.37}, {'connected_gene': 'CTRB2', 'score': 11.1}, {'connected_gene': 'CHST6', 'score': 10.93}, {'connected_gene': 'RNU6-758P', 'score': 10.64}, {'connected_gene': 'CFDP1', 'score': 0.39}, {'connected_gene': 'GC16M075409', 'score': 0.39}, {'connected_gene': 'ENSG00000252122', 'score': 0.39}, {'connected_gene': 'ENSG00000261717', 'score': 0.26}]
chr16	GH16I075423	75423391	75425307	0.74	[{'connected_gene': 'ENSG00000261783', 'score': 28.64}, {'connected_gene': 'CHST6', 'score': 10.93}, {'connected_gene': 'CFDP1', 'score': 10.75}, {'connected_gene': 'RNU6-758P', 'score': 10.64}, {'connected_gene': 'GC16M075409', 'score': 0.39}, {'connected_gene': 'ENSG00000252122', 'score': 0.39}, {'connected_gene': 'ENSG00000261717', 'score': 0.26}]
chr16	GH16I075537	75537537	75538058	0.4	[{'connected_gene': 'PIR47522', 'score': 550.77}, {'connected_gene': 'ADAT1', 'score': 33.41}, {'connected_gene': 'CHST6', 'score': 12.05}, {'connected_gene': 'GABARAPL2', 'score': 12.0}, {'connected_gene': 'TMEM231', 'score': 4.76}, {'connected_gene': 'CHST5', 'score': 0.77}, {'connected_gene': 'ENSG00000260092', 'score': 0.44}]
chr16	GH16I075540	75540460	75542227	0.51	[{'connected_gene': 'PIR47522', 'score': 550.77}, {'connected_gene': 'ADAT1', 'score': 40.29}, {'connected_gene': 'CHST6', 'score': 12.03}, {'connected_gene': 'GABARAPL2', 'score': 12.0}, {'connected_gene': 'CHST5', 'score': 5.76}, {'connected_gene': 'TMEM231', 'score': 4.79}, {'connected_gene': 'ENSG00000260092', 'score': 0.77}, {'connected_gene': 'ENSG00000259992', 'score': 0.2}]
chr16	GH16I075538	75538801	75539400	0.4	[{'connected_gene': 'PIR47522', 'score': 550.77}, {'connected_gene': 'ADAT1', 'score': 39.65}, {'connected_gene': 'CHST6', 'score': 12.05}, {'connected_gene': 'GABARAPL2', 'score': 12.0}, {'connected_gene': 'CHST5', 'score': 6.76}, {'connected_gene': 'ENSG00000260092', 'score': 0.44}, {'connected_gene': 'TMEM231', 'score': 0.37}]
chr16	GH16I075400	75400957	75403400	0.79	[{'connected_gene': 'ENSG00000261783', 'score': 33.75}, {'connected_gene': 'CFDP1', 'score': 10.97}, {'connected_gene': 'CHST6', 'score': 10.75}, {'connected_gene': 'GC16M075409', 'score': 0.44}, {'connected_gene': 'ENSG00000252122', 'score': 0.44}]