PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370640	[[99349449, 99350690]]	[[99349654, 99350326]]
NM_001009997	[[99349449, 99350691]]	[[99349654, 99350326]]

Promoter

Chrom	Start	End	Description
chr10	99349450	99349458	CAGE_peak_2_at_C10orf62_5end
chr10	99349465	99349484	CAGE_peak_1_at_C10orf62_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I097726	97726260	97727573	1.25	[{'connected_gene': 'MARVELD1', 'score': 18.83}, {'connected_gene': 'AVPI1', 'score': 11.46}, {'connected_gene': 'PI4K2A', 'score': 10.29}, {'connected_gene': 'C10orf62', 'score': 10.24}, {'connected_gene': 'HOGA1', 'score': 10.23}, {'connected_gene': 'ENSG00000249967', 'score': 10.23}, {'connected_gene': 'SFRP5', 'score': 10.14}, {'connected_gene': 'GC10M097717', 'score': 0.44}, {'connected_gene': 'ZFYVE27', 'score': 0.39}]
chr10	GH10I097742	97742851	97744526	0.74	[{'connected_gene': 'MARVELD1', 'score': 15.5}, {'connected_gene': 'HOGA1', 'score': 14.92}, {'connected_gene': 'SFRP5', 'score': 11.69}, {'connected_gene': 'PI4K2A', 'score': 9.73}, {'connected_gene': 'C10orf62', 'score': 9.69}, {'connected_gene': 'ENSG00000249967', 'score': 9.69}, {'connected_gene': 'ZFYVE27', 'score': 0.44}]
chr10	GH10I097532	97532800	97534264	0.77	[{'connected_gene': 'MMS19', 'score': 11.93}, {'connected_gene': 'UBTD1', 'score': 11.93}, {'connected_gene': 'ANKRD2', 'score': 11.42}, {'connected_gene': 'ENSG00000249967', 'score': 10.9}, {'connected_gene': 'HOGA1', 'score': 10.9}, {'connected_gene': 'C10orf62', 'score': 10.89}, {'connected_gene': 'PI4K2A', 'score': 10.81}, {'connected_gene': 'SLIT1', 'score': 9.43}, {'connected_gene': 'RRP12', 'score': 4.8}, {'connected_gene': 'GC10P097530', 'score': 0.77}, {'connected_gene': 'GC10P097540', 'score': 0.44}]
chr10	GH10I097521	97521084	97521293	0.4	[{'connected_gene': 'MMS19', 'score': 12.55}, {'connected_gene': 'UBTD1', 'score': 12.55}, {'connected_gene': 'ANKRD2', 'score': 11.54}, {'connected_gene': 'ENSG00000249967', 'score': 11.03}, {'connected_gene': 'HOGA1', 'score': 11.03}, {'connected_gene': 'C10orf62', 'score': 11.03}, {'connected_gene': 'PI4K2A', 'score': 10.95}, {'connected_gene': 'GC10P097530', 'score': 0.44}, {'connected_gene': 'GC10P097506', 'score': 0.39}]
chr10	GH10I097534	97534800	97535001	0.76	[{'connected_gene': 'MMS19', 'score': 11.91}, {'connected_gene': 'UBTD1', 'score': 11.91}, {'connected_gene': 'ENSG00000249967', 'score': 10.6}, {'connected_gene': 'HOGA1', 'score': 10.6}, {'connected_gene': 'C10orf62', 'score': 10.59}, {'connected_gene': 'PI4K2A', 'score': 10.5}, {'connected_gene': 'GC10P097530', 'score': 0.77}, {'connected_gene': 'GC10P097540', 'score': 0.44}]
chr10	GH10I097545	97545464	97545800	0.62	[{'connected_gene': 'MMS19', 'score': 11.63}, {'connected_gene': 'UBTD1', 'score': 11.63}, {'connected_gene': 'ENSG00000249967', 'score': 11.53}, {'connected_gene': 'HOGA1', 'score': 11.53}, {'connected_gene': 'C10orf62', 'score': 11.52}, {'connected_gene': 'ANKRD2', 'score': 11.46}, {'connected_gene': 'PI4K2A', 'score': 11.41}, {'connected_gene': 'SFRP5', 'score': 3.94}, {'connected_gene': 'GC10P097540', 'score': 0.44}]
chr10	GH10I097553	97553144	97554237	0.96	[{'connected_gene': 'PI4K2A', 'score': 16.91}, {'connected_gene': 'MMS19', 'score': 12.01}, {'connected_gene': 'UBTD1', 'score': 12.01}, {'connected_gene': 'ENSG00000249967', 'score': 11.82}, {'connected_gene': 'HOGA1', 'score': 11.82}, {'connected_gene': 'C10orf62', 'score': 11.8}, {'connected_gene': 'PGAM1', 'score': 6.88}, {'connected_gene': 'ANKRD2', 'score': 5.33}, {'connected_gene': 'GC10P097540', 'score': 0.39}]
chr10	GH10I097639	97639841	97642491	2.44	[{'connected_gene': 'PI4K2A', 'score': 556.94}, {'connected_gene': 'R3HCC1L', 'score': 28.15}, {'connected_gene': 'MORN4', 'score': 23.89}, {'connected_gene': 'ZFYVE27', 'score': 15.88}, {'connected_gene': 'HPS1', 'score': 12.68}, {'connected_gene': 'ANKRD2', 'score': 11.81}, {'connected_gene': 'AVPI1', 'score': 11.18}, {'connected_gene': 'C10orf62', 'score': 10.96}, {'connected_gene': 'ENSG00000249967', 'score': 10.95}, {'connected_gene': 'HOGA1', 'score': 10.95}, {'connected_gene': 'MMS19', 'score': 10.49}, {'connected_gene': 'UBTD1', 'score': 10.49}, {'connected_gene': 'RRP12', 'score': 3.95}, {'connected_gene': 'PIR48481', 'score': 0.29}, {'connected_gene': 'GC10M097562', 'score': 0.19}]
chr10	GH10I097638	97638325	97639219	0.43	[{'connected_gene': 'PI4K2A', 'score': 550.77}, {'connected_gene': 'MORN4', 'score': 34.45}, {'connected_gene': 'ANKRD2', 'score': 11.81}, {'connected_gene': 'AVPI1', 'score': 11.18}, {'connected_gene': 'C10orf62', 'score': 10.97}, {'connected_gene': 'ENSG00000249967', 'score': 10.96}, {'connected_gene': 'HOGA1', 'score': 10.96}, {'connected_gene': 'ZFYVE27', 'score': 10.81}, {'connected_gene': 'MMS19', 'score': 10.5}, {'connected_gene': 'UBTD1', 'score': 10.5}, {'connected_gene': 'GC10M097562', 'score': 0.18}]
chr10	GH10I097609	97609078	97609230	0.45	[{'connected_gene': 'C10orf62', 'score': 0.37}, {'connected_gene': 'HOGA1', 'score': 0.34}, {'connected_gene': 'ENSG00000249967', 'score': 0.34}, {'connected_gene': 'MORN4', 'score': 0.31}, {'connected_gene': 'GC10M097562', 'score': 0.14}]
chr10	GH10I097589	97589672	97589731	0.68	[{'connected_gene': 'C10orf62', 'score': 550.77}, {'connected_gene': 'HOGA1', 'score': 0.44}, {'connected_gene': 'ENSG00000249967', 'score': 0.44}, {'connected_gene': 'MORN4', 'score': 0.26}, {'connected_gene': 'GC10M097562', 'score': 0.13}]
chr10	GH10I097548	97548904	97551133	0.91	[{'connected_gene': 'ANKRD2', 'score': 17.46}, {'connected_gene': 'UBTD1', 'score': 17.22}, {'connected_gene': 'MMS19', 'score': 11.73}, {'connected_gene': 'ENSG00000249967', 'score': 11.68}, {'connected_gene': 'HOGA1', 'score': 11.68}, {'connected_gene': 'C10orf62', 'score': 11.66}, {'connected_gene': 'PI4K2A', 'score': 11.54}, {'connected_gene': 'GC10P097540', 'score': 0.44}]
chr10	GH10I097598	97598446	97602705	0.54	[{'connected_gene': 'ANKRD2', 'score': 12.45}, {'connected_gene': 'MMS19', 'score': 10.71}, {'connected_gene': 'UBTD1', 'score': 10.71}, {'connected_gene': 'C10orf62', 'score': 7.42}, {'connected_gene': 'MORN4', 'score': 6.9}, {'connected_gene': 'MARVELD1', 'score': 6.17}, {'connected_gene': 'HOGA1', 'score': 6.0}, {'connected_gene': 'PGAM1', 'score': 4.31}, {'connected_gene': 'ENSG00000249967', 'score': 0.37}, {'connected_gene': 'GC10M097562', 'score': 0.14}]
chr10	GH10I097595	97595280	97598319	1.39	[{'connected_gene': 'ANKRD2', 'score': 12.48}, {'connected_gene': 'MMS19', 'score': 10.65}, {'connected_gene': 'UBTD1', 'score': 10.65}, {'connected_gene': 'C10orf62', 'score': 6.92}, {'connected_gene': 'ENSG00000249967', 'score': 0.39}, {'connected_gene': 'HOGA1', 'score': 0.39}, {'connected_gene': 'MORN4', 'score': 0.28}, {'connected_gene': 'GC10M097562', 'score': 0.13}]
chr10	GH10I097606	97606984	97607687	0.2	[{'connected_gene': 'ANKRD2', 'score': 11.84}, {'connected_gene': 'MMS19', 'score': 10.71}, {'connected_gene': 'UBTD1', 'score': 10.71}, {'connected_gene': 'C10orf62', 'score': 0.37}, {'connected_gene': 'HOGA1', 'score': 0.34}, {'connected_gene': 'ENSG00000249967', 'score': 0.34}, {'connected_gene': 'MORN4', 'score': 0.31}, {'connected_gene': 'GC10M097562', 'score': 0.14}]
chr10	GH10I097405	97405602	97409373	1.68	[{'connected_gene': 'FRAT2', 'score': 38.71}, {'connected_gene': 'RRP12', 'score': 38.21}, {'connected_gene': 'FRAT1', 'score': 22.34}, {'connected_gene': 'ARHGAP19', 'score': 21.03}, {'connected_gene': 'ZDHHC16', 'score': 12.56}, {'connected_gene': 'EXOSC1', 'score': 12.56}, {'connected_gene': 'MMS19', 'score': 10.45}, {'connected_gene': 'UBTD1', 'score': 10.45}, {'connected_gene': 'ENSG00000249967', 'score': 10.11}, {'connected_gene': 'HOGA1', 'score': 10.11}, {'connected_gene': 'C10orf62', 'score': 10.1}, {'connected_gene': 'PI4K2A', 'score': 10.09}, {'connected_gene': 'ZFYVE27', 'score': 3.63}, {'connected_gene': 'LCOR', 'score': 1.67}, {'connected_gene': 'ENSG00000231970', 'score': 0.44}, {'connected_gene': 'ENSG00000200737', 'score': 0.39}, {'connected_gene': 'GC10M097424', 'score': 0.39}, {'connected_gene': 'LOC644215', 'score': 0.37}]
chr10	GH10I097355	97355202	97357334	0.97	[{'connected_gene': 'RRP12', 'score': 34.14}, {'connected_gene': 'ARHGAP19', 'score': 24.29}, {'connected_gene': 'SLIT1', 'score': 9.92}, {'connected_gene': 'SLIT1-AS1', 'score': 9.89}, {'connected_gene': 'ENSG00000249967', 'score': 9.63}, {'connected_gene': 'HOGA1', 'score': 9.63}, {'connected_gene': 'C10orf62', 'score': 9.63}, {'connected_gene': 'PI4K2A', 'score': 9.62}, {'connected_gene': 'PGAM1', 'score': 7.32}, {'connected_gene': 'FRAT2', 'score': 0.34}, {'connected_gene': 'RPL34P20', 'score': 0.28}]
chr10	GH10I097353	97353402	97354999	0.8	[{'connected_gene': 'RRP12', 'score': 32.82}, {'connected_gene': 'ARHGAP19', 'score': 24.28}, {'connected_gene': 'PI4K2A', 'score': 11.64}, {'connected_gene': 'SLIT1', 'score': 10.08}, {'connected_gene': 'SLIT1-AS1', 'score': 10.05}, {'connected_gene': 'ENSG00000249967', 'score': 9.76}, {'connected_gene': 'HOGA1', 'score': 9.76}, {'connected_gene': 'C10orf62', 'score': 9.75}, {'connected_gene': 'FRAT1', 'score': 8.16}, {'connected_gene': 'FRAT2', 'score': 7.97}, {'connected_gene': 'ZFYVE27', 'score': 4.51}, {'connected_gene': 'LCOR', 'score': 2.75}, {'connected_gene': 'RPL34P20', 'score': 0.28}]
chr10	GH10I097389	97389652	97391435	0.31	[{'connected_gene': 'RRP12', 'score': 43.02}, {'connected_gene': 'ARHGAP19', 'score': 22.73}, {'connected_gene': 'PGAM1', 'score': 19.16}, {'connected_gene': 'ENSG00000200737', 'score': 11.94}, {'connected_gene': 'MMS19', 'score': 10.43}, {'connected_gene': 'UBTD1', 'score': 10.43}, {'connected_gene': 'ENSG00000249967', 'score': 10.32}, {'connected_gene': 'HOGA1', 'score': 10.32}, {'connected_gene': 'C10orf62', 'score': 10.31}, {'connected_gene': 'PI4K2A', 'score': 10.3}, {'connected_gene': 'RPL34P20', 'score': 0.77}, {'connected_gene': 'FRAT2', 'score': 0.22}]
chr10	GH10I097387	97387918	97389212	0.31	[{'connected_gene': 'RRP12', 'score': 37.87}, {'connected_gene': 'ENSG00000200737', 'score': 11.94}, {'connected_gene': 'PGAM1', 'score': 11.92}, {'connected_gene': 'ARHGAP19', 'score': 10.69}, {'connected_gene': 'MMS19', 'score': 10.42}, {'connected_gene': 'UBTD1', 'score': 10.42}, {'connected_gene': 'ENSG00000249967', 'score': 10.31}, {'connected_gene': 'HOGA1', 'score': 10.31}, {'connected_gene': 'C10orf62', 'score': 10.31}, {'connected_gene': 'PI4K2A', 'score': 10.3}, {'connected_gene': 'RPL34P20', 'score': 0.77}, {'connected_gene': 'FRAT2', 'score': 0.23}]
chr10	GH10I097610	97610716	97612027	0.2	[{'connected_gene': 'MORN4', 'score': 12.9}, {'connected_gene': 'MARVELD1', 'score': 5.53}, {'connected_gene': 'HOGA1', 'score': 4.9}, {'connected_gene': 'C10orf62', 'score': 0.34}, {'connected_gene': 'ENSG00000249967', 'score': 0.31}, {'connected_gene': 'GC10M097562', 'score': 0.15}]
chr10	GH10I097629	97629731	97629790	0.5	[{'connected_gene': 'MORN4', 'score': 550.77}, {'connected_gene': 'C10orf62', 'score': 11.94}, {'connected_gene': 'HOGA1', 'score': 11.92}, {'connected_gene': 'ENSG00000249967', 'score': 11.92}, {'connected_gene': 'GC10M097562', 'score': 0.18}]
chr10	GH10I097612	97612400	97612801	0.97	[{'connected_gene': 'MORN4', 'score': 0.34}, {'connected_gene': 'C10orf62', 'score': 0.34}, {'connected_gene': 'HOGA1', 'score': 0.31}, {'connected_gene': 'ENSG00000249967', 'score': 0.31}, {'connected_gene': 'GC10M097562', 'score': 0.15}]
chr10	GH10I097632	97632601	97634248	2.01	[{'connected_gene': 'MORN4', 'score': 584.84}, {'connected_gene': 'ANKRD2', 'score': 11.43}, {'connected_gene': 'C10orf62', 'score': 11.29}, {'connected_gene': 'HOGA1', 'score': 11.28}, {'connected_gene': 'ENSG00000249967', 'score': 11.28}, {'connected_gene': 'GC10M097562', 'score': 0.18}]
chr10	GH10I097517	97517215	97519859	0.99	[{'connected_gene': 'HOGA1', 'score': 17.47}, {'connected_gene': 'C10orf62', 'score': 17.23}, {'connected_gene': 'ENSG00000249967', 'score': 11.23}, {'connected_gene': 'PI4K2A', 'score': 11.15}, {'connected_gene': 'ANKRD2', 'score': 11.09}, {'connected_gene': 'ZDHHC16', 'score': 6.26}, {'connected_gene': 'SLIT1', 'score': 5.93}, {'connected_gene': 'GC10P097506', 'score': 0.39}, {'connected_gene': 'GC10P097530', 'score': 0.39}, {'connected_gene': 'UBTD1', 'score': 0.37}]
chr10	GH10I097583	97583535	97585456	1.78	[{'connected_gene': 'HOGA1', 'score': 588.99}, {'connected_gene': 'ENSG00000249967', 'score': 550.77}, {'connected_gene': 'C10orf62', 'score': 0.44}, {'connected_gene': 'ANKRD2', 'score': 0.39}, {'connected_gene': 'GC10M097562', 'score': 0.12}]
chr10	GH10I097585	97585524	97585673	0.72	[{'connected_gene': 'HOGA1', 'score': 563.32}, {'connected_gene': 'ENSG00000249967', 'score': 550.77}, {'connected_gene': 'C10orf62', 'score': 0.77}, {'connected_gene': 'GC10M097562', 'score': 0.13}]
chr10	GH10I097537	97537941	97544754	1.66	[{'connected_gene': 'GC10P097540', 'score': 550.77}, {'connected_gene': 'PI4K2A', 'score': 19.56}, {'connected_gene': 'ANKRD2', 'score': 16.65}, {'connected_gene': 'MMS19', 'score': 11.65}, {'connected_gene': 'UBTD1', 'score': 11.65}, {'connected_gene': 'ENSG00000249967', 'score': 11.52}, {'connected_gene': 'HOGA1', 'score': 11.52}, {'connected_gene': 'C10orf62', 'score': 11.5}, {'connected_gene': 'RRP12', 'score': 9.75}]
chr10	GH10I097195	97195710	97197551	1.5	[{'connected_gene': 'PIR51669', 'score': 550.77}, {'connected_gene': 'C10orf62', 'score': 59.73}, {'connected_gene': 'SLIT1', 'score': 5.38}, {'connected_gene': 'ARHGAP19-SLIT1', 'score': 0.15}]
chr10	GH10I097531	97531724	97531893	0.38	[{'connected_gene': 'GC10P097530', 'score': 550.77}, {'connected_gene': 'ANKRD2', 'score': 15.73}, {'connected_gene': 'MMS19', 'score': 11.93}, {'connected_gene': 'UBTD1', 'score': 11.93}, {'connected_gene': 'ENSG00000249967', 'score': 10.9}, {'connected_gene': 'HOGA1', 'score': 10.9}, {'connected_gene': 'C10orf62', 'score': 10.89}, {'connected_gene': 'PI4K2A', 'score': 10.81}, {'connected_gene': 'SLIT1', 'score': 9.43}, {'connected_gene': 'GC10P097540', 'score': 0.44}]
chr10	GH10I097513	97513809	97515317	0.2	[{'connected_gene': 'ENSG00000249967', 'score': 10.95}, {'connected_gene': 'HOGA1', 'score': 10.95}, {'connected_gene': 'C10orf62', 'score': 10.93}, {'connected_gene': 'PI4K2A', 'score': 10.87}, {'connected_gene': 'ARHGAP19', 'score': 9.5}, {'connected_gene': 'ZDHHC16', 'score': 6.25}, {'connected_gene': 'RRP12', 'score': 5.2}, {'connected_gene': 'GC10P097506', 'score': 0.44}, {'connected_gene': 'GC10P097530', 'score': 0.37}, {'connected_gene': 'UBTD1', 'score': 0.37}]
chr10	GH10I097508	97508484	97508653	0.31	[{'connected_gene': 'GC10P097506', 'score': 550.77}, {'connected_gene': 'HOGA1', 'score': 10.7}, {'connected_gene': 'ENSG00000249967', 'score': 10.7}, {'connected_gene': 'C10orf62', 'score': 10.69}, {'connected_gene': 'PI4K2A', 'score': 10.63}, {'connected_gene': 'ARHGAP19', 'score': 9.5}, {'connected_gene': 'UBTD1', 'score': 0.44}, {'connected_gene': 'GC10P097530', 'score': 0.34}]
chr10	GH10I097515	97515497	97516538	0.49	[{'connected_gene': 'ENSG00000249967', 'score': 10.95}, {'connected_gene': 'HOGA1', 'score': 10.95}, {'connected_gene': 'C10orf62', 'score': 10.94}, {'connected_gene': 'PI4K2A', 'score': 10.87}, {'connected_gene': 'ZDHHC16', 'score': 6.25}, {'connected_gene': 'RRP12', 'score': 5.66}, {'connected_gene': 'GC10P097506', 'score': 0.44}, {'connected_gene': 'GC10P097530', 'score': 0.39}, {'connected_gene': 'UBTD1', 'score': 0.37}]
chr10	GH10I097560	97560969	97561400	0.66	[{'connected_gene': 'ENSG00000249967', 'score': 12.21}, {'connected_gene': 'HOGA1', 'score': 12.21}, {'connected_gene': 'C10orf62', 'score': 12.18}, {'connected_gene': 'PI4K2A', 'score': 12.05}, {'connected_gene': 'MMS19', 'score': 11.24}, {'connected_gene': 'UBTD1', 'score': 11.24}, {'connected_gene': 'ANKRD2', 'score': 0.39}, {'connected_gene': 'GC10P097540', 'score': 0.34}]