PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001001437	[[34522267, 34522775], [34523196, 34523311], [34523996, 34524147]]	[[34522684, 34522775], [34523196, 34523311], [34523996, 34524072]]

Promoter

Chrom	Start	End	Description
chr17	34625726	34625734	CAGE_peak_1_at_CCL3L1_5end,CAGE_peak_1_at_CCL3L3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I036065	36065811	36067418	0.79	[{'connected_gene': 'CCL5', 'score': 8.39}, {'connected_gene': 'CCL3', 'score': 2.08}, {'connected_gene': 'CCL4', 'score': 1.97}, {'connected_gene': 'MYO19', 'score': 1.84}, {'connected_gene': 'PIGW', 'score': 1.8}, {'connected_gene': 'CCL3L3', 'score': 1.69}, {'connected_gene': 'CCL18', 'score': 0.77}, {'connected_gene': 'ENSG00000277089', 'score': 0.44}]
chr17	GH17I036154	36154281	36154664	0.34	[{'connected_gene': 'CCL4', 'score': 39.81}, {'connected_gene': 'CCL3', 'score': 37.13}, {'connected_gene': 'CCL3L3', 'score': 33.18}, {'connected_gene': 'CCL4L2', 'score': 7.44}, {'connected_gene': 'CCL5', 'score': 2.48}, {'connected_gene': 'CCL23', 'score': 2.22}, {'connected_gene': 'GGNBP2', 'score': 1.51}, {'connected_gene': 'ENSG00000282738', 'score': 0.44}, {'connected_gene': 'LOC101927369', 'score': 0.44}, {'connected_gene': 'GC17P036146', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.44}, {'connected_gene': 'ENSG00000276241', 'score': 0.28}]
chr17	GH17I036058	36058029	36058194	0.23	[{'connected_gene': 'CCL4', 'score': 36.05}, {'connected_gene': 'CCL3', 'score': 34.35}, {'connected_gene': 'CCL3L3', 'score': 33.68}, {'connected_gene': 'CCL15', 'score': 10.8}, {'connected_gene': 'CCL23', 'score': 3.68}, {'connected_gene': 'CCL5', 'score': 2.49}, {'connected_gene': 'LOC105371746', 'score': 0.77}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036102	36102926	36109083	1.81	[{'connected_gene': 'CCL4', 'score': 591.35}, {'connected_gene': 'CCL3', 'score': 41.06}, {'connected_gene': 'CCL3L3', 'score': 35.07}, {'connected_gene': 'CCL5', 'score': 13.6}, {'connected_gene': 'CCL18', 'score': 11.22}, {'connected_gene': 'CCL15', 'score': 10.85}, {'connected_gene': 'PIGW', 'score': 9.55}, {'connected_gene': 'SLFN12L', 'score': 5.42}, {'connected_gene': 'MYO19', 'score': 4.92}, {'connected_gene': 'GGNBP2', 'score': 2.35}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17P036104', 'score': 0.77}, {'connected_gene': 'GC17P036113', 'score': 0.77}]
chr17	GH17I036092	36092118	36092586	0.95	[{'connected_gene': 'CCL3', 'score': 41.93}, {'connected_gene': 'CCL3L3', 'score': 38.25}, {'connected_gene': 'CCL4', 'score': 37.12}, {'connected_gene': 'CCL18', 'score': 11.08}, {'connected_gene': 'CCL5', 'score': 2.77}, {'connected_gene': 'GGNBP2', 'score': 1.8}]
chr17	GH17I036055	36055983	36056443	0.33	[{'connected_gene': 'CCL3L3', 'score': 48.14}, {'connected_gene': 'CCL4', 'score': 43.64}, {'connected_gene': 'CCL3', 'score': 42.17}, {'connected_gene': 'CCL5', 'score': 2.79}, {'connected_gene': 'CCL23', 'score': 2.69}, {'connected_gene': 'LOC105371746', 'score': 0.44}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036195	36195201	36197800	0.9	[{'connected_gene': 'CCL3L3', 'score': 550.77}, {'connected_gene': 'ENSG00000274767', 'score': 0.39}, {'connected_gene': 'LOC100420851', 'score': 0.29}]
chr17	GH17I036192	36192002	36193043	0.2	[{'connected_gene': 'CCL3L3', 'score': 0.77}, {'connected_gene': 'ENSG00000274767', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.29}]
chr17	GH17I036149	36148892	36149839	1.38	[{'connected_gene': 'LOC101927369', 'score': 550.77}, {'connected_gene': 'CCL4', 'score': 62.85}, {'connected_gene': 'CCL3', 'score': 61.03}, {'connected_gene': 'CCL3L3', 'score': 52.27}, {'connected_gene': 'CCL5', 'score': 3.0}, {'connected_gene': 'CCL23', 'score': 2.49}, {'connected_gene': 'GGNBP2', 'score': 1.88}, {'connected_gene': 'GC17P036146', 'score': 0.77}, {'connected_gene': 'ENSG00000282738', 'score': 0.39}, {'connected_gene': 'LOC100420851', 'score': 0.39}, {'connected_gene': 'ENSG00000276241', 'score': 0.29}]
chr17	GH17I036148	36148693	36148701	0.5	[{'connected_gene': 'LOC101927369', 'score': 550.77}, {'connected_gene': 'CCL3L3', 'score': 4.2}, {'connected_gene': 'CCL3', 'score': 3.91}, {'connected_gene': 'CCL4', 'score': 3.74}, {'connected_gene': 'LYZL6', 'score': 2.25}, {'connected_gene': 'GC17P036146', 'score': 0.77}, {'connected_gene': 'ENSG00000276241', 'score': 0.29}]
chr17	GH17I035888	35888487	35894010	1.47	[{'connected_gene': 'ENSG00000271394', 'score': 550.77}, {'connected_gene': 'GC17M035888', 'score': 550.77}, {'connected_gene': 'CCL3', 'score': 22.25}, {'connected_gene': 'CCL4', 'score': 20.3}, {'connected_gene': 'CCL3L3', 'score': 18.82}, {'connected_gene': 'TAF15', 'score': 11.89}, {'connected_gene': 'GAS2L2', 'score': 11.52}, {'connected_gene': 'C17orf50', 'score': 9.27}, {'connected_gene': 'HEATR9', 'score': 5.59}, {'connected_gene': 'CCL5', 'score': 3.8}, {'connected_gene': 'SLFN12L', 'score': 2.39}, {'connected_gene': 'LYZL6', 'score': 2.17}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17M035909', 'score': 0.37}, {'connected_gene': 'PIR57610', 'score': 0.37}, {'connected_gene': 'LRRC37A8P', 'score': 0.37}]
chr17	GH17I036202	36202432	36203000	0.4	[{'connected_gene': 'GC17P036212', 'score': 0.44}, {'connected_gene': 'CCL3L3', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.26}]
chr17	GH17I036187	36187602	36190435	0.2	[{'connected_gene': 'ENSG00000274767', 'score': 0.44}, {'connected_gene': 'CCL3L3', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.31}]
chr17	GH17I036182	36182800	36184001	0.5	[{'connected_gene': 'ENSG00000274767', 'score': 550.77}, {'connected_gene': 'CCL3L3', 'score': 0.39}, {'connected_gene': 'LOC100420851', 'score': 0.34}]
chr17	GH17I036190	36190601	36190800	0.2	[{'connected_gene': 'ENSG00000274767', 'score': 0.44}, {'connected_gene': 'CCL3L3', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.31}]