PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000304771	[[75297962, 75299229], [75316852, 75317049], [75319153, 75319367], [75378509, 75380165]]	[[75298103, 75299229], [75316852, 75317049], [75319153, 75319367], [75378509, 75379414]]
ENST00000526740	[[75297963, 75299229], [75316852, 75317049], [75319153, 75319367], [75379574, 75379652]]	[[75298103, 75299229], [75316852, 75317049], [75319153, 75319285]]
ENST00000434603	[[75313904, 75317049], [75319153, 75319367], [75378509, 75379479]]	[[75316848, 75317049], [75319153, 75319367], [75378509, 75379414]]
ENST00000526689	[[75299034, 75299229], [75309930, 75310081]]	None
NM_033063	[[75297962, 75299229], [75316852, 75317049], [75319153, 75319367], [75378509, 75379479]]	[[75298103, 75299229], [75316852, 75317049], [75319153, 75319367], [75378509, 75379414]]
NM_207577	[[75313904, 75317049], [75319153, 75319367], [75378509, 75379479]]	[[75316848, 75317049], [75319153, 75319367], [75378509, 75379414]]

Promoter

Chrom	Start	End	Description
chr11	75310097	75310110	CAGE_peak_8_at_MAP6_5end
chr11	75379125	75379193	CAGE_peak_1_at_MAP6_5end
chr11	75379595	75379606	CAGE_peak_17_at_MAP6_5end
chr11	75379612	75379726	CAGE_peak_2_at_MAP6_5end
chr11	75379951	75379971	CAGE_peak_6_at_MAP6_5end
chr11	75379980	75380019	CAGE_peak_3_at_MAP6_5end
chr11	75380041	75380055	CAGE_peak_4_at_MAP6_5end
chr11	75380074	75380091	CAGE_peak_5_at_MAP6_5end
chr11	75380221	75380232	CAGE_peak_7_at_MAP6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I075587	75587233	75590607	1.16	[{'connected_gene': 'SERPINH1', 'score': 12.45}, {'connected_gene': 'GDPD5', 'score': 10.53}, {'connected_gene': 'MOGAT2', 'score': 10.39}, {'connected_gene': 'LOC105369391', 'score': 9.5}, {'connected_gene': 'MAP6', 'score': 7.37}, {'connected_gene': 'ENSG00000255434', 'score': 0.44}]
chr11	GH11I075601	75601025	75601263	0.41	[{'connected_gene': 'SERPINH1', 'score': 11.3}, {'connected_gene': 'MOGAT2', 'score': 10.64}, {'connected_gene': 'MAP6', 'score': 4.41}, {'connected_gene': 'ENSG00000255434', 'score': 0.77}, {'connected_gene': 'LOC105369391', 'score': 0.37}, {'connected_gene': 'ENSG00000254630', 'score': 0.28}]
chr11	GH11I075603	75603096	75605111	0.66	[{'connected_gene': 'SERPINH1', 'score': 11.29}, {'connected_gene': 'MOGAT2', 'score': 10.65}, {'connected_gene': 'MAP6', 'score': 8.31}, {'connected_gene': 'ENSG00000255434', 'score': 0.44}, {'connected_gene': 'LOC105369391', 'score': 0.34}, {'connected_gene': 'ENSG00000254630', 'score': 0.29}]
chr11	GH11I075556	75556674	75567142	2.25	[{'connected_gene': 'SERPINH1', 'score': 556.14}, {'connected_gene': 'RPS3', 'score': 23.55}, {'connected_gene': 'RNF169', 'score': 21.42}, {'connected_gene': 'EMSY', 'score': 14.12}, {'connected_gene': 'LOC105369391', 'score': 11.7}, {'connected_gene': 'SNORD15B', 'score': 11.67}, {'connected_gene': 'GDPD5', 'score': 11.34}, {'connected_gene': 'MAP6', 'score': 11.09}, {'connected_gene': 'KLHL35', 'score': 10.69}, {'connected_gene': 'RN7SL239P', 'score': 10.24}, {'connected_gene': 'MOGAT2', 'score': 9.73}, {'connected_gene': 'RPS12P22', 'score': 4.39}]
chr11	GH11I075712	75712550	75713792	0.2	[{'connected_gene': 'DGAT2', 'score': 10.86}, {'connected_gene': 'LOC105369391', 'score': 7.58}, {'connected_gene': 'MOGAT2', 'score': 0.77}, {'connected_gene': 'LOC105369392', 'score': 0.44}, {'connected_gene': 'MAP6', 'score': 0.26}]
chr11	GH11I075663	75663976	75664045	0.43	[{'connected_gene': 'MOGAT2', 'score': 10.69}, {'connected_gene': 'GC11P075668', 'score': 0.77}, {'connected_gene': 'MAP6', 'score': 0.44}, {'connected_gene': 'GC11P075643', 'score': 0.34}, {'connected_gene': 'LOC100419542', 'score': 0.34}]
chr11	GH11I075632	75632874	75634203	0.38	[{'connected_gene': 'MOGAT2', 'score': 10.1}, {'connected_gene': 'MAP6', 'score': 4.5}, {'connected_gene': 'ENSG00000254630', 'score': 0.44}, {'connected_gene': 'ENSG00000255434', 'score': 0.28}]
chr11	GH11I075698	75698214	75698488	0.52	[{'connected_gene': 'MOGAT2', 'score': 0.37}, {'connected_gene': 'MAP6', 'score': 0.31}]
chr11	GH11I075697	75697996	75698165	0.38	[{'connected_gene': 'MOGAT2', 'score': 0.37}, {'connected_gene': 'MAP6', 'score': 0.31}]
chr11	GH11I075634	75634473	75636314	0.72	[{'connected_gene': 'MOGAT2', 'score': 10.1}, {'connected_gene': 'ENSG00000254630', 'score': 0.77}, {'connected_gene': 'MAP6', 'score': 0.29}, {'connected_gene': 'ENSG00000255434', 'score': 0.28}]
chr11	GH11I075878	75878425	75880909	0.31	[{'connected_gene': 'UVRAG', 'score': 4.86}, {'connected_gene': 'SLCO2B1', 'score': 4.28}, {'connected_gene': 'MAP6', 'score': 4.18}, {'connected_gene': 'PPP1R1AP1', 'score': 0.29}, {'connected_gene': 'GC11M075838', 'score': 0.26}, {'connected_gene': 'ENSG00000199362', 'score': 0.26}]
chr11	GH11I075706	75706001	75706719	1.07	[{'connected_gene': 'EMSY', 'score': 9.97}, {'connected_gene': 'MAP6', 'score': 6.97}, {'connected_gene': 'LOC105369392', 'score': 0.39}, {'connected_gene': 'MOGAT2', 'score': 0.39}]
chr11	GH11I075667	75667600	75668772	1.71	[{'connected_gene': 'MAP6', 'score': 559.06}, {'connected_gene': 'GC11P075668', 'score': 550.77}, {'connected_gene': 'GC11P075643', 'score': 0.31}, {'connected_gene': 'LOC100419542', 'score': 0.31}]
chr11	GH11I075668	75668936	75669085	0.6	[{'connected_gene': 'MAP6', 'score': 550.77}, {'connected_gene': 'GC11P075668', 'score': 550.77}]
chr11	GH11I075593	75593004	75594011	0.72	[{'connected_gene': 'LOC105369391', 'score': 12.2}, {'connected_gene': 'SERPINH1', 'score': 11.76}, {'connected_gene': 'GDPD5', 'score': 10.25}, {'connected_gene': 'MAP6', 'score': 6.81}, {'connected_gene': 'ENSG00000255434', 'score': 0.77}]
chr11	GH11I075557	75556396	75556545	0.4	[{'connected_gene': 'LOC105369391', 'score': 11.67}, {'connected_gene': 'GDPD5', 'score': 11.36}, {'connected_gene': 'MAP6', 'score': 11.08}, {'connected_gene': 'KLHL35', 'score': 10.69}, {'connected_gene': 'MOGAT2', 'score': 9.33}, {'connected_gene': 'SERPINH1', 'score': 0.44}]
chr11	GH11I075689	75689366	75690965	1.14	[{'connected_gene': 'LOC105369391', 'score': 17.32}, {'connected_gene': 'MOGAT2', 'score': 11.46}, {'connected_gene': 'DGAT2', 'score': 10.9}, {'connected_gene': 'SERPINH1', 'score': 10.38}, {'connected_gene': 'MAP6', 'score': 7.17}, {'connected_gene': 'UVRAG', 'score': 1.51}]
chr11	GH11I075625	75625840	75628838	0.66	[{'connected_gene': 'LOC105369391', 'score': 10.81}, {'connected_gene': 'MOGAT2', 'score': 10.32}, {'connected_gene': 'ENSG00000254630', 'score': 0.39}, {'connected_gene': 'ENSG00000255434', 'score': 0.29}, {'connected_gene': 'MAP6', 'score': 0.26}]
chr11	GH11I075654	75654344	75656724	0.69	[{'connected_gene': 'LOC105369391', 'score': 10.45}, {'connected_gene': 'GC11P075643', 'score': 0.39}, {'connected_gene': 'MAP6', 'score': 0.39}, {'connected_gene': 'LOC100419542', 'score': 0.39}, {'connected_gene': 'GC11P075668', 'score': 0.39}]
chr11	GH11I075597	75597756	75597885	0.62	[{'connected_gene': 'ENSG00000255434', 'score': 550.77}, {'connected_gene': 'SERPINH1', 'score': 11.56}, {'connected_gene': 'DGAT2', 'score': 9.74}, {'connected_gene': 'GDPD5', 'score': 9.68}, {'connected_gene': 'LOC105369391', 'score': 0.39}, {'connected_gene': 'ENSG00000254630', 'score': 0.26}, {'connected_gene': 'MAP6', 'score': 0.19}]
chr11	GH11I075870	75870136	75870381	0.42	[{'connected_gene': 'ENSG00000254814', 'score': 11.99}, {'connected_gene': 'DGAT2', 'score': 11.92}, {'connected_gene': 'MAP6', 'score': 2.94}, {'connected_gene': 'GC11M075838', 'score': 0.29}, {'connected_gene': 'ENSG00000199362', 'score': 0.29}, {'connected_gene': 'PPP1R1AP1', 'score': 0.26}, {'connected_gene': 'UVRAG', 'score': 0.22}]
chr11	GH11I075639	75639447	75640530	0.88	[{'connected_gene': 'ENSG00000254630', 'score': 550.77}, {'connected_gene': 'SNORD15B', 'score': 10.28}, {'connected_gene': 'GC11P075643', 'score': 0.77}, {'connected_gene': 'LOC100419542', 'score': 0.77}, {'connected_gene': 'MAP6', 'score': 0.31}]
chr11	GH11I076046	76046993	76049575	0.82	[{'connected_gene': 'ENSG00000255434', 'score': 11.58}, {'connected_gene': 'LOC105369391', 'score': 10.84}, {'connected_gene': 'ENSG00000255421', 'score': 10.75}, {'connected_gene': 'GVQW3', 'score': 10.72}, {'connected_gene': 'THAP12', 'score': 10.67}, {'connected_gene': 'ENSG00000271757', 'score': 10.07}, {'connected_gene': 'EMSY', 'score': 9.98}, {'connected_gene': 'MAP6', 'score': 9.93}, {'connected_gene': 'ENSG00000272301', 'score': 9.73}, {'connected_gene': 'PIR47539', 'score': 0.28}, {'connected_gene': 'UVRAG', 'score': 0.07}]