PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000385019	[[10928101, 10928172]]	None
NR_029586	[[10928101, 10928172]]	None

Promoter

Chrom	Start	End	Description
chr19	10928246	10928266	CAGE_peak_4_at_MIR199A1_5end
chr19	10928326	10928342	CAGE_peak_1_at_MIR199A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I010808	10808667	10820309	1.59	[{'connected_gene': 'KRI1', 'score': 16.33}, {'connected_gene': 'ILF3', 'score': 15.07}, {'connected_gene': 'TIMM29', 'score': 14.9}, {'connected_gene': 'ZNF441', 'score': 14.08}, {'connected_gene': 'PPAN', 'score': 13.89}, {'connected_gene': 'ZNF627', 'score': 13.68}, {'connected_gene': 'C19orf38', 'score': 11.93}, {'connected_gene': 'FBXL12', 'score': 11.61}, {'connected_gene': 'EIF3G', 'score': 9.82}, {'connected_gene': 'ILF3-AS1', 'score': 7.27}, {'connected_gene': 'PDE4A', 'score': 6.28}, {'connected_gene': 'SLC44A2', 'score': 6.01}, {'connected_gene': 'SMARCA4', 'score': 4.79}, {'connected_gene': 'CARM1', 'score': 4.66}, {'connected_gene': 'TYK2', 'score': 4.4}, {'connected_gene': 'ICAM3', 'score': 4.2}, {'connected_gene': 'DNM2', 'score': 3.28}, {'connected_gene': 'S1PR5', 'score': 3.16}, {'connected_gene': 'CDKN2D', 'score': 2.3}, {'connected_gene': 'ATG4D', 'score': 1.18}, {'connected_gene': 'MIR199A1', 'score': 0.77}, {'connected_gene': 'PIR56040', 'score': 0.39}]
chr19	GH19I010776	10776462	10777867	1.09	[{'connected_gene': 'KRI1', 'score': 40.11}, {'connected_gene': 'ZNF627', 'score': 35.6}, {'connected_gene': 'ILF3', 'score': 23.8}, {'connected_gene': 'DNMT1', 'score': 21.53}, {'connected_gene': 'YIPF2', 'score': 21.53}, {'connected_gene': 'TIMM29', 'score': 21.37}, {'connected_gene': 'PPAN', 'score': 18.84}, {'connected_gene': 'FBXL12', 'score': 14.01}, {'connected_gene': 'MIR199A1', 'score': 12.61}, {'connected_gene': 'ZNF846', 'score': 11.88}, {'connected_gene': 'RAVER1', 'score': 11.34}, {'connected_gene': 'SLC44A2', 'score': 10.96}, {'connected_gene': 'CDKN2D', 'score': 10.81}, {'connected_gene': 'FDX2', 'score': 10.1}, {'connected_gene': 'CDC37', 'score': 9.92}, {'connected_gene': 'MIR4748', 'score': 0.77}, {'connected_gene': 'PIR47140', 'score': 0.23}, {'connected_gene': 'DNM2', 'score': 0.22}]
chr19	GH19I010805	10805077	10806400	0.78	[{'connected_gene': 'SLC44A2', 'score': 6.68}, {'connected_gene': 'PIR56040', 'score': 0.77}, {'connected_gene': 'MIR199A1', 'score': 0.39}, {'connected_gene': 'DNM2', 'score': 0.17}]
chr19	GH19I010757	10757802	10767615	1.43	[{'connected_gene': 'MIR199A1', 'score': 12.38}, {'connected_gene': 'SLC44A2', 'score': 12.32}, {'connected_gene': 'DNM2', 'score': 11.97}, {'connected_gene': 'MIR638', 'score': 11.97}, {'connected_gene': 'KRI1', 'score': 11.09}, {'connected_gene': 'CDKN2D', 'score': 10.81}, {'connected_gene': 'SMARCA4', 'score': 10.53}, {'connected_gene': 'MIR4748', 'score': 0.37}, {'connected_gene': 'PIR47140', 'score': 0.28}]
chr19	GH19I010782	10782521	10783317	0.43	[{'connected_gene': 'MIR199A1', 'score': 12.65}, {'connected_gene': 'SLC44A2', 'score': 10.96}, {'connected_gene': 'GC19P010786', 'score': 0.77}, {'connected_gene': 'MIR4748', 'score': 0.77}, {'connected_gene': 'DNM2', 'score': 0.21}]
chr19	GH19I010779	10779491	10781482	0.83	[{'connected_gene': 'MIR4748', 'score': 550.77}, {'connected_gene': 'MIR199A1', 'score': 12.63}, {'connected_gene': 'SLC44A2', 'score': 10.96}, {'connected_gene': 'SMARCA4', 'score': 10.28}, {'connected_gene': 'ILF3-AS1', 'score': 4.98}, {'connected_gene': 'GC19P010786', 'score': 0.44}, {'connected_gene': 'DNM2', 'score': 0.21}]
chr19	GH19I010820	10820747	10821458	0.71	[{'connected_gene': 'GC19M010822', 'score': 550.77}, {'connected_gene': 'MIR199A1', 'score': 0.77}, {'connected_gene': 'DNM2', 'score': 0.15}]