PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000385219	[[44155703, 44155802]]	None
NR_029700	[[44155703, 44155802]]	None

Promoter

Chrom	Start	End	Description
chr3	44155786	44155788	CAGE_peak_1_at_MIR138-1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I043879	43879349	43879498	0.8	[{'connected_gene': 'MIR138-1', 'score': 10.87}, {'connected_gene': 'GC03P043926', 'score': 0.25}, {'connected_gene': 'ENSG00000235886', 'score': 0.15}, {'connected_gene': 'GC03M043165', 'score': 0.15}]
chr3	GH03I044233	44233079	44238725	1.17	[{'connected_gene': 'ZNF660', 'score': 39.63}, {'connected_gene': 'ZNF502', 'score': 20.16}, {'connected_gene': 'ZNF197', 'score': 19.44}, {'connected_gene': 'ZKSCAN7', 'score': 12.54}, {'connected_gene': 'ZNF445', 'score': 11.38}, {'connected_gene': 'ZNF852', 'score': 10.59}, {'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'ZNF35', 'score': 9.79}, {'connected_gene': 'SNRK-AS1', 'score': 9.72}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TCAIM', 'score': 7.76}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.13}]
chr3	GH03I044232	44232509	44232658	0.2	[{'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.14}]
chr3	GH03I044008	44008294	44009458	0.38	[{'connected_gene': 'RNU6-367P', 'score': 10.83}, {'connected_gene': 'MIR138-1', 'score': 10.83}, {'connected_gene': 'ENSG00000261786', 'score': 5.05}, {'connected_gene': 'ENSG00000272121', 'score': 0.44}, {'connected_gene': 'GC03M044031', 'score': 0.34}]
chr3	GH03I043893	43893801	43895127	0.92	[{'connected_gene': 'RNU6-367P', 'score': 10.03}, {'connected_gene': 'MIR138-1', 'score': 9.81}, {'connected_gene': 'GC03P043926', 'score': 0.29}, {'connected_gene': 'GC03M043165', 'score': 0.18}, {'connected_gene': 'ENSG00000235886', 'score': 0.14}]
chr3	GH03I043968	43968609	43968758	0.31	[{'connected_gene': 'RNU6-367P', 'score': 11.01}, {'connected_gene': 'MIR138-1', 'score': 9.83}, {'connected_gene': 'ENSG00000261786', 'score': 5.35}, {'connected_gene': 'GC03M043165', 'score': 0.44}, {'connected_gene': 'GC03P043926', 'score': 0.26}]
chr3	GH03I044045	44045414	44046668	1.02	[{'connected_gene': 'RNU6-367P', 'score': 11.51}, {'connected_gene': 'MIR138-1', 'score': 10.3}, {'connected_gene': 'ENSG00000261786', 'score': 6.57}, {'connected_gene': 'GC03M044031', 'score': 0.39}]
chr3	GH03I044047	44047160	44049329	0.67	[{'connected_gene': 'RNU6-367P', 'score': 12.3}, {'connected_gene': 'MIR138-1', 'score': 10.75}, {'connected_gene': 'GC03M044031', 'score': 0.37}]
chr3	GH03I043997	43997723	44000012	1.81	[{'connected_gene': 'ENSG00000271192', 'score': 550.77}, {'connected_gene': 'ENSG00000272121', 'score': 550.77}, {'connected_gene': 'MIR138-1', 'score': 11.4}, {'connected_gene': 'RNU6-367P', 'score': 11.31}, {'connected_gene': 'ENSG00000261786', 'score': 5.97}]
chr3	GH03I043994	43994679	43997388	1.55	[{'connected_gene': 'ENSG00000271192', 'score': 550.77}, {'connected_gene': 'ENSG00000261786', 'score': 11.89}, {'connected_gene': 'MIR138-1', 'score': 11.4}, {'connected_gene': 'GC03M043165', 'score': 0.37}]
chr3	GH03I043869	43869281	43874312	1.28	[{'connected_gene': 'ENSG00000261786', 'score': 21.02}, {'connected_gene': 'ZNF852', 'score': 11.86}, {'connected_gene': 'ZNF662', 'score': 11.35}, {'connected_gene': 'ZNF502', 'score': 10.89}, {'connected_gene': 'RNU6-367P', 'score': 10.69}, {'connected_gene': 'SNRK', 'score': 10.31}, {'connected_gene': 'MIR138-1', 'score': 10.29}, {'connected_gene': 'TOPAZ1', 'score': 9.7}, {'connected_gene': 'ANO10', 'score': 1.47}, {'connected_gene': 'GC03P043926', 'score': 0.23}, {'connected_gene': 'ENSG00000235886', 'score': 0.16}, {'connected_gene': 'GC03M043165', 'score': 0.15}]
chr3	GH03I044016	44016889	44017038	0.4	[{'connected_gene': 'ENSG00000261786', 'score': 11.3}, {'connected_gene': 'RNU6-367P', 'score': 11.02}, {'connected_gene': 'MIR138-1', 'score': 9.89}, {'connected_gene': 'GC03M044031', 'score': 0.37}, {'connected_gene': 'ENSG00000272121', 'score': 0.37}]
chr3	GH03I044000	44000565	44001091	0.96	[{'connected_gene': 'ENSG00000272121', 'score': 550.77}, {'connected_gene': 'RNU6-367P', 'score': 10.94}, {'connected_gene': 'ENSG00000261786', 'score': 10.27}, {'connected_gene': 'MIR138-1', 'score': 10.11}, {'connected_gene': 'GC03M044031', 'score': 0.29}]