PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261267	[[69742120, 69742324], [69743887, 69744052], [69745999, 69746078], [69746932, 69748014]]	[[69742188, 69742324], [69743887, 69744052], [69745999, 69746078], [69746932, 69746999]]
ENST00000549690	[[69742163, 69742324], [69743887, 69744052], [69746932, 69747275]]	[[69742188, 69742324], [69743887, 69744052], [69746932, 69747045]]
ENST00000548839	[[69742165, 69742324], [69743887, 69744286]]	[[69742188, 69742324], [69743887, 69744066]]
NM_000239	[[69742133, 69742324], [69743887, 69744052], [69745999, 69746078], [69746932, 69748013]]	[[69742188, 69742324], [69743887, 69744052], [69745999, 69746078], [69746932, 69746999]]

Promoter

Chrom	Start	End	Description
chr12	69742152	69742171	CAGE_peak_1_at_LYZ_5end
chr12	69746926	69746936	CAGE_peak_8_at_LYZ_5end
chr12	69746937	69747004	CAGE_peak_4_at_LYZ_5end
chr12	69747008	69747026	CAGE_peak_7_at_LYZ_5end
chr12	69747028	69747035	CAGE_peak_9_at_LYZ_5end
chr12	69747041	69747093	CAGE_peak_5_at_LYZ_5end
chr12	69747096	69747192	CAGE_peak_2_at_LYZ_5end
chr12	69747193	69747262	CAGE_peak_3_at_LYZ_5end
chr12	69747538	69747621	CAGE_peak_6_at_LYZ_5end
chr12	69747643	69747652	CAGE_peak_10_at_LYZ_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I069358	69358888	69361115	2.09	[{'connected_gene': 'YEATS4', 'score': 592.52}, {'connected_gene': 'LYZ', 'score': 52.25}, {'connected_gene': 'NUP107', 'score': 39.1}, {'connected_gene': 'CNOT2', 'score': 21.32}, {'connected_gene': 'KRT8P39', 'score': 19.69}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'RPL10P12', 'score': 12.26}, {'connected_gene': 'CPSF6', 'score': 11.13}, {'connected_gene': 'RN7SL804P', 'score': 0.26}]
chr12	GH12I069284	69284000	69284600	1.33	[{'connected_gene': 'C1GALT1P1', 'score': 550.77}, {'connected_gene': 'GC12P069282', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 11.94}, {'connected_gene': 'GC12P069299', 'score': 0.37}]
chr12	GH12I069337	69337002	69339218	1.45	[{'connected_gene': 'LYZ', 'score': 61.36}, {'connected_gene': 'YEATS4', 'score': 12.93}, {'connected_gene': 'CPM', 'score': 3.29}, {'connected_gene': 'ENSG00000274979', 'score': 0.44}]
chr12	GH12I069350	69350801	69351800	0.72	[{'connected_gene': 'LYZ', 'score': 12.05}, {'connected_gene': 'YEATS4', 'score': 9.54}, {'connected_gene': 'ENSG00000257764', 'score': 0.77}]
chr12	GH12I069351	69350001	69350600	0.66	[{'connected_gene': 'LYZ', 'score': 550.77}, {'connected_gene': 'YEATS4', 'score': 16.5}, {'connected_gene': 'ENSG00000257764', 'score': 0.77}]
chr12	GH12I069340	69340401	69344200	1.34	[{'connected_gene': 'LYZ', 'score': 57.35}, {'connected_gene': 'YEATS4', 'score': 12.97}, {'connected_gene': 'ENSG00000274979', 'score': 0.39}]
chr12	GH12I069348	69348200	69349475	2.11	[{'connected_gene': 'LYZ', 'score': 571.56}, {'connected_gene': 'YEATS4', 'score': 16.46}, {'connected_gene': 'ENSG00000257764', 'score': 0.44}]
chr12	GH12I069291	69291035	69291600	1.02	[{'connected_gene': 'LYZ', 'score': 11.63}, {'connected_gene': 'C1GALT1P1', 'score': 0.44}, {'connected_gene': 'GC12P069299', 'score': 0.44}]
chr12	GH12I069068	69068350	69068950	1.02	[{'connected_gene': 'LYZ', 'score': 5.8}, {'connected_gene': 'RAP1B', 'score': 3.96}, {'connected_gene': 'CPM', 'score': 2.27}, {'connected_gene': 'GC12M069009', 'score': 0.22}, {'connected_gene': 'GC12M069139', 'score': 0.19}]
chr12	GH12I069039	69039800	69040310	0.87	[{'connected_gene': 'LYZ', 'score': 9.95}, {'connected_gene': 'RAP1B', 'score': 7.52}, {'connected_gene': 'CPM', 'score': 4.34}, {'connected_gene': 'GC12M069009', 'score': 0.29}, {'connected_gene': 'GC12M069139', 'score': 0.15}]
chr12	GH12I069066	69066524	69066787	0.45	[{'connected_gene': 'LYZ', 'score': 4.07}, {'connected_gene': 'RAP1B', 'score': 2.66}, {'connected_gene': 'CPM', 'score': 1.69}, {'connected_gene': 'GC12M069009', 'score': 0.22}, {'connected_gene': 'GC12M069139', 'score': 0.19}]
chr12	GH12I069390	69390001	69390110	0.31	[{'connected_gene': 'LYZ', 'score': 11.15}, {'connected_gene': 'FRS2', 'score': 10.39}, {'connected_gene': 'RN7SL804P', 'score': 0.39}, {'connected_gene': 'YEATS4', 'score': 0.29}]
chr12	GH12I069404	69404130	69406882	0.88	[{'connected_gene': 'LYZ', 'score': 15.05}, {'connected_gene': 'FRS2', 'score': 10.74}, {'connected_gene': 'CCT2', 'score': 10.04}, {'connected_gene': 'YEATS4', 'score': 6.15}, {'connected_gene': 'RN7SL804P', 'score': 0.77}, {'connected_gene': 'RPS26P45', 'score': 0.37}]
chr12	GH12I069345	69345841	69346010	0.94	[{'connected_gene': 'LYZ', 'score': 0.77}, {'connected_gene': 'ENSG00000274979', 'score': 0.39}]
chr12	GH12I069685	69685524	69690997	1.56	[{'connected_gene': 'BEST3', 'score': 571.61}, {'connected_gene': 'RAB3IP', 'score': 21.1}, {'connected_gene': 'LOC101928002', 'score': 11.35}, {'connected_gene': 'LYZ', 'score': 9.84}, {'connected_gene': 'MDM2', 'score': 4.27}, {'connected_gene': 'ENSG00000279551', 'score': 0.31}]
chr12	GH12I068961	68961777	68964758	1.46	[{'connected_gene': 'CPM', 'score': 601.96}, {'connected_gene': 'RAP1B', 'score': 6.62}, {'connected_gene': 'LYZ', 'score': 4.72}, {'connected_gene': 'PRELID2P1', 'score': 0.44}]
chr12	GH12I069055	69055704	69056088	0.61	[{'connected_gene': 'CPM', 'score': 57.35}, {'connected_gene': 'RAP1B', 'score': 6.94}, {'connected_gene': 'LYZ', 'score': 5.47}, {'connected_gene': 'GC12M069009', 'score': 0.25}, {'connected_gene': 'GC12M069139', 'score': 0.18}]
chr12	GH12I069052	69052025	69054139	1.28	[{'connected_gene': 'CPM', 'score': 18.92}, {'connected_gene': 'RAP1B', 'score': 5.03}, {'connected_gene': 'LYZ', 'score': 2.97}, {'connected_gene': 'GC12M069009', 'score': 0.26}, {'connected_gene': 'GC12M069139', 'score': 0.17}]
chr12	GH12I069253	69253621	69255463	0.69	[{'connected_gene': 'CPSF6', 'score': 15.78}, {'connected_gene': 'CNOT2', 'score': 15.29}, {'connected_gene': 'NUP107', 'score': 15.27}, {'connected_gene': 'KRT8P39', 'score': 11.78}, {'connected_gene': 'MDM2', 'score': 11.02}, {'connected_gene': 'LYZ', 'score': 10.93}, {'connected_gene': 'RPL10P12', 'score': 10.7}, {'connected_gene': 'GC12P069269', 'score': 0.37}]
chr12	GH12I069238	69238484	69241576	2.3	[{'connected_gene': 'CPSF6', 'score': 559.71}, {'connected_gene': 'LYZ', 'score': 23.47}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'MDM2', 'score': 8.14}, {'connected_gene': 'YEATS4', 'score': 8.13}, {'connected_gene': 'FRS2', 'score': 7.94}, {'connected_gene': 'CCT2', 'score': 6.82}, {'connected_gene': 'SLC35E3', 'score': 3.65}, {'connected_gene': 'RAB3IP', 'score': 3.6}, {'connected_gene': 'GC12P069269', 'score': 0.31}]
chr12	GH12I069427	69427645	69430192	0.38	[{'connected_gene': 'FRS2', 'score': 11.15}, {'connected_gene': 'LYZ', 'score': 10.41}, {'connected_gene': 'YEATS4', 'score': 5.79}, {'connected_gene': 'GC12P069426', 'score': 0.77}, {'connected_gene': 'LINC02373', 'score': 0.77}]
chr12	GH12I069526	69526959	69529328	0.79	[{'connected_gene': 'FRS2', 'score': 18.68}, {'connected_gene': 'LYZ', 'score': 10.79}, {'connected_gene': 'CCT2', 'score': 5.2}, {'connected_gene': 'YEATS4', 'score': 4.8}, {'connected_gene': 'GC12P069484', 'score': 0.26}, {'connected_gene': 'GC12P069483', 'score': 0.26}, {'connected_gene': 'MIR3913-2', 'score': 0.22}]
chr12	GH12I069568	69568857	69571310	0.88	[{'connected_gene': 'FRS2', 'score': 18.1}, {'connected_gene': 'LYZ', 'score': 10.66}, {'connected_gene': 'MIR3913-2', 'score': 0.39}, {'connected_gene': 'GC12P069484', 'score': 0.17}, {'connected_gene': 'GC12P069483', 'score': 0.17}]
chr12	GH12I069469	69469780	69471919	2.05	[{'connected_gene': 'FRS2', 'score': 557.94}, {'connected_gene': 'CCT2', 'score': 10.12}, {'connected_gene': 'LYZ', 'score': 9.86}, {'connected_gene': 'GC12P069484', 'score': 0.39}, {'connected_gene': 'GC12P069483', 'score': 0.39}]
chr12	GH12I069474	69474420	69476417	1.17	[{'connected_gene': 'CCT2', 'score': 16.73}, {'connected_gene': 'FRS2', 'score': 12.88}, {'connected_gene': 'LYZ', 'score': 9.86}, {'connected_gene': 'CPSF6', 'score': 6.87}, {'connected_gene': 'YEATS4', 'score': 6.67}, {'connected_gene': 'RAB3IP', 'score': 1.55}, {'connected_gene': 'GC12P069484', 'score': 0.44}, {'connected_gene': 'GC12P069483', 'score': 0.44}]
chr12	GH12I069619	69619509	69619530	0.23	[{'connected_gene': 'CCT2', 'score': 20.04}, {'connected_gene': 'FRS2', 'score': 19.78}, {'connected_gene': 'CPSF6', 'score': 19.26}, {'connected_gene': 'YEATS4', 'score': 18.54}, {'connected_gene': 'LYZ', 'score': 10.65}, {'connected_gene': 'RAB3IP', 'score': 2.06}, {'connected_gene': 'LOC105369823', 'score': 0.77}, {'connected_gene': 'LRRC10', 'score': 0.44}]
chr12	GH12I069584	69584769	69586522	2.08	[{'connected_gene': 'CCT2', 'score': 555.47}, {'connected_gene': 'MIR3913-1', 'score': 550.77}, {'connected_gene': 'MIR3913-2', 'score': 550.77}, {'connected_gene': 'FRS2', 'score': 17.32}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'LYZ', 'score': 10.13}, {'connected_gene': 'LRRC10', 'score': 0.31}]
chr12	GH12I069624	69624161	69624310	0.97	[{'connected_gene': 'LOC105369823', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 10.34}, {'connected_gene': 'LRRC10', 'score': 0.39}]
chr12	GH12I069059	69059078	69060361	1.18	[{'connected_gene': 'RNU7-4P', 'score': 10.57}, {'connected_gene': 'CPM', 'score': 9.0}, {'connected_gene': 'LYZ', 'score': 7.01}, {'connected_gene': 'RAP1B', 'score': 6.36}, {'connected_gene': 'GC12M069009', 'score': 0.23}, {'connected_gene': 'GC12M069139', 'score': 0.18}]
chr12	GH12I068911	68911854	68911922	0.44	[{'connected_gene': 'RNU7-4P', 'score': 550.77}, {'connected_gene': 'ENSG00000257289', 'score': 550.77}, {'connected_gene': 'GC12P068912', 'score': 550.77}, {'connected_gene': 'CPM', 'score': 3.27}, {'connected_gene': 'LYZ', 'score': 2.28}, {'connected_gene': 'RAP1B', 'score': 1.94}, {'connected_gene': 'ENSG00000257181', 'score': 0.2}]
chr12	GH12I069328	69328449	69334568	2.01	[{'connected_gene': 'ENSG00000274979', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 40.75}, {'connected_gene': 'NUP107', 'score': 19.98}, {'connected_gene': 'YEATS4', 'score': 19.57}, {'connected_gene': 'CNOT2', 'score': 16.33}, {'connected_gene': 'CPSF6', 'score': 14.5}, {'connected_gene': 'KRT8P39', 'score': 11.09}, {'connected_gene': 'CPM', 'score': 1.89}, {'connected_gene': 'GC12M069304', 'score': 0.34}]
chr12	GH12I069352	69352201	69352400	0.51	[{'connected_gene': 'ENSG00000257764', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 0.77}]
chr12	GH12I069006	69006235	69009579	1.32	[{'connected_gene': 'GC12M069009', 'score': 550.77}, {'connected_gene': 'CPM', 'score': 37.58}, {'connected_gene': 'RAP1B', 'score': 11.78}, {'connected_gene': 'LYZ', 'score': 8.74}, {'connected_gene': 'CPSF6', 'score': 4.08}, {'connected_gene': 'MDM2', 'score': 4.07}, {'connected_gene': 'FRS2', 'score': 3.93}, {'connected_gene': 'YEATS4', 'score': 3.65}, {'connected_gene': 'SLC35E3', 'score': 3.13}, {'connected_gene': 'NUP107', 'score': 2.54}]