PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr8	144099896	144099913	CAGE_peak_2_at_LY6E_5end
chr8	144099914	144099953	CAGE_peak_1_at_LY6E_5end
chr8	144102329	144102348	CAGE_peak_4_at_LY6E_5end
chr8	144102719	144102796	CAGE_peak_3_at_LY6E_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I142814	142814301	142817095	1.4	[{'connected_gene': 'LYNX1', 'score': 46.26}, {'connected_gene': 'ZNF623', 'score': 20.02}, {'connected_gene': 'JRK', 'score': 17.86}, {'connected_gene': 'EEF1D', 'score': 13.2}, {'connected_gene': 'LY6D', 'score': 12.36}, {'connected_gene': 'ZNF696', 'score': 11.4}, {'connected_gene': 'TIGD5', 'score': 10.96}, {'connected_gene': 'ENSG00000255050', 'score': 10.61}, {'connected_gene': 'GPIHBP1', 'score': 4.44}, {'connected_gene': 'LY6E', 'score': 2.43}, {'connected_gene': 'GLI4', 'score': 1.23}, {'connected_gene': 'ENSG00000283686', 'score': 0.44}, {'connected_gene': 'GML', 'score': 0.37}]
chr8	GH08I142087	142087921	142096626	0.64	[{'connected_gene': 'LY6E', 'score': 4.65}, {'connected_gene': 'ENSG00000261710', 'score': 0.77}, {'connected_gene': 'MIR4472-1', 'score': 0.18}]
chr8	GH08I143010	143010989	143011451	0.2	[{'connected_gene': 'C8orf31', 'score': 12.18}, {'connected_gene': 'ENSG00000253715', 'score': 10.4}, {'connected_gene': 'LY6D', 'score': 10.4}, {'connected_gene': 'NRBP2', 'score': 4.48}, {'connected_gene': 'LY6E', 'score': 0.44}, {'connected_gene': 'LY6E-DT', 'score': 0.44}, {'connected_gene': 'GC08P142999', 'score': 0.39}]
chr8	GH08I143275	143275808	143282340	2.12	[{'connected_gene': 'MINCR', 'score': 30.32}, {'connected_gene': 'ZNF623', 'score': 23.03}, {'connected_gene': 'GPAA1', 'score': 21.9}, {'connected_gene': 'PARP10', 'score': 21.24}, {'connected_gene': 'ENSG00000255050', 'score': 19.67}, {'connected_gene': 'ZNF707', 'score': 17.22}, {'connected_gene': 'ZFP41', 'score': 13.95}, {'connected_gene': 'EEF1D', 'score': 13.15}, {'connected_gene': 'ZC3H3', 'score': 12.57}, {'connected_gene': 'RHPN1', 'score': 11.44}, {'connected_gene': 'SHARPIN', 'score': 10.36}, {'connected_gene': 'FAM83H-AS1', 'score': 8.13}, {'connected_gene': 'TOP1MT', 'score': 5.92}, {'connected_gene': 'TIGD5', 'score': 3.54}, {'connected_gene': 'GLI4', 'score': 3.12}, {'connected_gene': 'LY6E', 'score': 2.33}, {'connected_gene': 'PYCR3', 'score': 2.09}, {'connected_gene': 'NAPRT', 'score': 1.9}, {'connected_gene': 'TSTA3', 'score': 1.86}, {'connected_gene': 'ENSG00000264668', 'score': 0.29}]
chr8	GH08I143012	143012630	143014661	1.3	[{'connected_gene': 'LY6E-DT', 'score': 35.88}, {'connected_gene': 'LY6E', 'score': 8.31}, {'connected_gene': 'LY6K', 'score': 1.52}, {'connected_gene': 'THEM6', 'score': 1.27}, {'connected_gene': 'GC08P142999', 'score': 0.39}]
chr8	GH08I143014	143014802	143020998	2.41	[{'connected_gene': 'LY6E-DT', 'score': 582.64}, {'connected_gene': 'LY6E', 'score': 557.02}, {'connected_gene': 'EEF1D', 'score': 13.2}, {'connected_gene': 'ZNF623', 'score': 11.89}, {'connected_gene': 'ZNF707', 'score': 10.88}, {'connected_gene': 'ENSG00000255050', 'score': 10.61}, {'connected_gene': 'GC08P142999', 'score': 0.37}]
chr8	GH08I143021	143021552	143028619	1.64	[{'connected_gene': 'LY6E-DT', 'score': 24.56}, {'connected_gene': 'MAFA', 'score': 1.29}, {'connected_gene': 'PIR51584', 'score': 0.77}, {'connected_gene': 'LY6E', 'score': 0.44}, {'connected_gene': 'GC08P143031', 'score': 0.44}]
chr8	GH08I142999	142999711	143000927	0.31	[{'connected_gene': 'GC08P142999', 'score': 550.77}, {'connected_gene': 'LY6E-DT', 'score': 14.64}, {'connected_gene': 'C8orf31', 'score': 11.65}, {'connected_gene': 'SLURP1', 'score': 10.57}, {'connected_gene': 'LY6E', 'score': 0.37}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000517503	[[144099398, 144099664], [144102304, 144102408], [144102730, 144102850], [144102982, 144103827]]	[[144099433, 144099664], [144102304, 144102408], [144102730, 144102839]]
ENST00000292494	[[144099898, 144100003], [144102299, 144102408], [144102730, 144102850], [144102982, 144103829]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000429120	[[144099899, 144100003], [144102304, 144102408], [144102730, 144102850], [144102982, 144103827]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000521699	[[144099933, 144100003], [144101678, 144101794], [144102304, 144102408], [144102730, 144102850], [144102982, 144103828]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000520531	[[144099944, 144100003], [144102304, 144102408], [144102730, 144103057]]	[[144102356, 144102408], [144102730, 144102900]]
ENST00000520466	[[144099944, 144100003], [144100249, 144100536], [144102299, 144102408], [144102730, 144102850], [144102982, 144103826]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000521003	[[144099945, 144100003], [144101678, 144101794], [144102299, 144102408], [144102730, 144102850], [144102982, 144103319]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000522528	[[144099945, 144100003], [144102304, 144102408], [144102765, 144102850], [144102982, 144103341]]	[[144102356, 144102408], [144102765, 144102839]]
ENST00000522971	[[144099958, 144100003], [144102333, 144102408], [144102730, 144102850], [144102982, 144103599]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000519611	[[144099960, 144100003], [144101678, 144101794], [144102304, 144102408], [144102730, 144102850], [144102965, 144103217]]	[[144102356, 144102408], [144102730, 144102850], [144102965, 144102994]]
ENST00000521182	[[144099962, 144100003], [144102299, 144102408], [144102765, 144102850], [144102982, 144103826]]	[[144102356, 144102408], [144102765, 144102839]]
ENST00000519546	[[144099968, 144100003], [144102299, 144102408], [144102730, 144102850], [144102965, 144103672]]	[[144102356, 144102408], [144102730, 144102850], [144102965, 144102994]]
ENST00000523847	[[144099969, 144100003], [144102299, 144102408], [144102730, 144102850], [144105085, 144105249]]	[[144102356, 144102408], [144102730, 144102850], [144105085, 144105114]]
ENST00000522024	[[144099973, 144100003], [144100249, 144100536], [144102304, 144102408], [144102730, 144102850], [144102982, 144103309]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
ENST00000519615	[[144103965, 144104459], [144105085, 144105247]]	None
NM_001127213	[[144099901, 144100003], [144102304, 144102408], [144102730, 144102850], [144102982, 144103827]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]
NM_002346	[[144099901, 144100003], [144102299, 144102408], [144102730, 144102850], [144102982, 144103827]]	[[144102356, 144102408], [144102730, 144102850], [144102982, 144103206]]