PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370602	[[99609995, 99610072], [99619214, 99619340], [99623686, 99623839], [99623924, 99624026], [99625346, 99627782]]	[[99610060, 99610072], [99619214, 99619340], [99623686, 99623839], [99623924, 99624026], [99625346, 99625457]]
ENST00000423054	[[99625987, 99626132], [99630822, 99631337]]	None
NM_001010917	[[99609994, 99610072], [99619214, 99619340], [99623686, 99623839], [99623924, 99624026], [99625346, 99631335]]	[[99610060, 99610072], [99619214, 99619340], [99623686, 99623839], [99623924, 99624026], [99625346, 99625457]]

Promoter

Chrom	Start	End	Description
chr10	99609582	99609664	CAGE_peak_1_at_GOLGA7B_5end
chr10	99609717	99609780	CAGE_peak_2_at_GOLGA7B_5end
chr10	99627478	99627480	CAGE_peak_3_at_GOLGA7B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I097857	97857285	97859511	0.57	[{'connected_gene': 'SFRP5', 'score': 10.82}, {'connected_gene': 'LOXL4', 'score': 9.23}, {'connected_gene': 'GOLGA7B', 'score': 5.92}, {'connected_gene': 'PIR47260', 'score': 0.31}, {'connected_gene': 'CRTAC1', 'score': 0.09}]
chr10	GH10I097828	97828699	97830699	0.38	[{'connected_gene': 'SFRP5', 'score': 11.36}, {'connected_gene': 'CRTAC1', 'score': 10.62}, {'connected_gene': 'GOLGA7B', 'score': 9.59}, {'connected_gene': 'ZFYVE27', 'score': 6.27}, {'connected_gene': 'PIR33458', 'score': 0.39}, {'connected_gene': 'LINC00866', 'score': 0.34}]
chr10	GH10I097837	97837681	97838646	0.2	[{'connected_gene': 'SFRP5', 'score': 11.15}, {'connected_gene': 'CRTAC1', 'score': 10.62}, {'connected_gene': 'GOLGA7B', 'score': 6.5}, {'connected_gene': 'PIR33458', 'score': 0.77}, {'connected_gene': 'LINC00866', 'score': 0.39}]
chr10	GH10I097862	97862667	97863395	0.2	[{'connected_gene': 'SFRP5', 'score': 11.57}, {'connected_gene': 'GOLGA7B', 'score': 0.39}, {'connected_gene': 'PIR47260', 'score': 0.34}, {'connected_gene': 'CRTAC1', 'score': 0.1}]
chr10	GH10I097861	97861153	97862400	1.17	[{'connected_gene': 'SFRP5', 'score': 11.58}, {'connected_gene': 'ZFYVE27', 'score': 10.39}, {'connected_gene': 'GOLGA7B', 'score': 0.39}, {'connected_gene': 'PIR47260', 'score': 0.34}, {'connected_gene': 'CRTAC1', 'score': 0.1}]
chr10	GH10I097827	97827695	97828631	0.31	[{'connected_gene': 'GOLGA7B', 'score': 20.36}, {'connected_gene': 'SFRP5', 'score': 11.36}, {'connected_gene': 'PIR33458', 'score': 0.39}, {'connected_gene': 'LINC00866', 'score': 0.34}]
chr10	GH10I097819	97819302	97819835	0.2	[{'connected_gene': 'GOLGA7B', 'score': 21.65}, {'connected_gene': 'SFRP5', 'score': 10.93}, {'connected_gene': 'PIR33458', 'score': 0.34}]
chr10	GH10I097809	97809900	97811211	0.56	[{'connected_gene': 'GOLGA7B', 'score': 8.15}, {'connected_gene': 'PIR33458', 'score': 0.29}, {'connected_gene': 'SFRP5', 'score': 0.28}]
chr10	GH10I097869	97869044	97870112	1.29	[{'connected_gene': 'GOLGA7B', 'score': 18.89}, {'connected_gene': 'MMS19', 'score': 12.93}, {'connected_gene': 'R3HCC1L', 'score': 12.85}, {'connected_gene': 'SFRP5', 'score': 11.08}, {'connected_gene': 'PIR47260', 'score': 0.39}, {'connected_gene': 'CRTAC1', 'score': 0.1}]
chr10	GH10I097850	97850408	97850413	0.72	[{'connected_gene': 'GOLGA7B', 'score': 550.77}, {'connected_gene': 'LINC00866', 'score': 550.77}, {'connected_gene': 'GC10M097848', 'score': 550.77}, {'connected_gene': 'PIR47260', 'score': 0.29}]
chr10	GH10I097852	97850817	97851253	0.63	[{'connected_gene': 'GOLGA7B', 'score': 550.77}, {'connected_gene': 'LINC00866', 'score': 550.77}, {'connected_gene': 'GC10M097848', 'score': 550.77}, {'connected_gene': 'PIR47260', 'score': 0.29}]
chr10	GH10I097848	97848875	97850401	2.03	[{'connected_gene': 'GOLGA7B', 'score': 556.5}, {'connected_gene': 'LINC00866', 'score': 550.77}, {'connected_gene': 'GC10M097848', 'score': 550.77}]
chr10	GH10I097851	97851292	97853207	0.58	[{'connected_gene': 'GOLGA7B', 'score': 6.7}, {'connected_gene': 'PIR47260', 'score': 0.29}]
chr10	GH10I097839	97839574	97841104	1.36	[{'connected_gene': 'PIR33458', 'score': 550.77}, {'connected_gene': 'CRTAC1', 'score': 10.33}, {'connected_gene': 'PYROXD2', 'score': 9.76}, {'connected_gene': 'GOLGA7B', 'score': 6.6}, {'connected_gene': 'LINC00866', 'score': 0.44}, {'connected_gene': 'SFRP5', 'score': 0.2}]
chr10	GH10I097881	97881799	97883441	0.89	[{'connected_gene': 'PIR47260', 'score': 550.77}, {'connected_gene': 'CRTAC1', 'score': 8.05}, {'connected_gene': 'GOLGA7B', 'score': 0.29}]