PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373574	[[127615754, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619780, 127620160]]	[[127615810, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619780, 127619909]]
NM_001276375	[[127615695, 127615879], [127616516, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127620170]]	[[127615810, 127615879], [127616516, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127619909]]
NM_001276376	[[127615695, 127615879], [127616483, 127616604], [127618075, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127620170]]	[[127616508, 127616604], [127618075, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127619909]]
NM_001045476	[[127615695, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619780, 127620170]]	[[127615810, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619780, 127619909]]
NM_001276374	[[127615695, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127620170]]	[[127615810, 127615879], [127616483, 127616604], [127617912, 127618029], [127618139, 127618237], [127618518, 127618599], [127618747, 127618879], [127619010, 127619160], [127619642, 127619690], [127619777, 127619909]]

Promoter

Chrom	Start	End	Description
chr9	127615715	127615732	CAGE_peak_2_at_WDR38_5end
chr9	127615733	127615756	CAGE_peak_1_at_WDR38_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I124880	124880928	124881759	0.31	[{'connected_gene': 'ARPC5L', 'score': 13.02}, {'connected_gene': 'WDR38', 'score': 12.15}, {'connected_gene': 'OLFML2A', 'score': 11.68}, {'connected_gene': 'GOLGA1', 'score': 10.51}, {'connected_gene': 'PPP6C', 'score': 4.35}, {'connected_gene': 'RNU4-82P', 'score': 0.44}, {'connected_gene': 'GC09M124888', 'score': 0.44}]
chr9	GH09I124849	124849558	124850466	0.83	[{'connected_gene': 'ARPC5L', 'score': 14.06}, {'connected_gene': 'WDR38', 'score': 0.77}, {'connected_gene': 'PIR55692', 'score': 0.28}]
chr9	GH09I124817	124817738	124819676	1.34	[{'connected_gene': 'ARPC5L', 'score': 5.8}, {'connected_gene': 'WDR38', 'score': 4.67}, {'connected_gene': 'PIR55692', 'score': 0.44}]
chr9	GH09I124831	124831464	124833362	1.29	[{'connected_gene': 'ARPC5L', 'score': 8.94}, {'connected_gene': 'OLFML2A', 'score': 5.28}, {'connected_gene': 'PIR55692', 'score': 0.34}, {'connected_gene': 'WDR38', 'score': 0.34}]
chr9	GH09I124834	124834077	124836335	1.22	[{'connected_gene': 'ARPC5L', 'score': 8.05}, {'connected_gene': 'OLFML2A', 'score': 6.49}, {'connected_gene': 'WDR38', 'score': 0.37}, {'connected_gene': 'PIR55692', 'score': 0.34}]
chr9	GH09I124894	124894682	124894891	0.66	[{'connected_gene': 'ARPC5L', 'score': 12.24}, {'connected_gene': 'RPL35', 'score': 12.24}, {'connected_gene': 'WDR38', 'score': 12.21}, {'connected_gene': 'RABEPK', 'score': 10.45}, {'connected_gene': 'RPSAP76', 'score': 10.45}, {'connected_gene': 'GC09M124888', 'score': 0.44}, {'connected_gene': 'RNU4-82P', 'score': 0.44}, {'connected_gene': 'GC09P124941', 'score': 0.25}, {'connected_gene': 'GOLGA1', 'score': 0.23}]
chr9	GH09I124897	124897373	124898395	0.82	[{'connected_gene': 'ARPC5L', 'score': 26.77}, {'connected_gene': 'RPL35', 'score': 12.22}, {'connected_gene': 'WDR38', 'score': 12.21}, {'connected_gene': 'RPSAP76', 'score': 10.45}, {'connected_gene': 'RABEPK', 'score': 10.45}, {'connected_gene': 'GOLGA1', 'score': 8.57}, {'connected_gene': 'GC09M124888', 'score': 0.39}, {'connected_gene': 'RNU4-82P', 'score': 0.39}, {'connected_gene': 'GC09P124941', 'score': 0.26}]
chr9	GH09I124857	124857802	124857951	0.43	[{'connected_gene': 'ARPC5L', 'score': 15.0}, {'connected_gene': 'RPL35', 'score': 0.77}, {'connected_gene': 'WDR38', 'score': 0.77}]
chr9	GH09I124839	124839371	124841933	1.03	[{'connected_gene': 'ARPC5L', 'score': 23.88}, {'connected_gene': 'RPL35', 'score': 12.8}, {'connected_gene': 'GOLGA1', 'score': 7.42}, {'connected_gene': 'OLFML2A', 'score': 5.07}, {'connected_gene': 'WDR38', 'score': 0.39}, {'connected_gene': 'PIR55692', 'score': 0.29}]
chr9	GH09I124858	124858023	124864492	2.25	[{'connected_gene': 'ARPC5L', 'score': 565.01}, {'connected_gene': 'RPL35', 'score': 550.77}, {'connected_gene': 'GAPVD1', 'score': 19.93}, {'connected_gene': 'GOLGA1', 'score': 16.89}, {'connected_gene': 'PRPS1P2', 'score': 13.73}, {'connected_gene': 'RABEPK', 'score': 6.29}, {'connected_gene': 'WDR38', 'score': 0.44}]
chr9	GH09I124617	124617107	124619051	1	[{'connected_gene': 'MIR181A2', 'score': 11.01}, {'connected_gene': 'MIR181B2', 'score': 11.0}, {'connected_gene': 'ARPC5L', 'score': 10.72}, {'connected_gene': 'RPL35', 'score': 10.72}, {'connected_gene': 'WDR38', 'score': 10.72}, {'connected_gene': 'ENSG00000231149', 'score': 10.5}, {'connected_gene': 'NR5A1', 'score': 10.48}, {'connected_gene': 'RN7SL302P', 'score': 0.39}, {'connected_gene': 'MIR181A2HG', 'score': 0.26}, {'connected_gene': 'NR6A1', 'score': 0.1}]
chr9	GH09I124720	124720250	124722226	1.1	[{'connected_gene': 'MIR181A2', 'score': 12.22}, {'connected_gene': 'MIR181B2', 'score': 12.22}, {'connected_gene': 'ENSG00000236643', 'score': 11.62}, {'connected_gene': 'NR6A1', 'score': 11.6}, {'connected_gene': 'WDR38', 'score': 11.04}, {'connected_gene': 'ARPC5L', 'score': 11.04}, {'connected_gene': 'RPL35', 'score': 11.04}, {'connected_gene': 'ENSG00000231149', 'score': 10.3}, {'connected_gene': 'NR5A1', 'score': 10.3}, {'connected_gene': 'GC09P124694', 'score': 0.31}]
chr9	GH09I124851	124851700	124854167	2.19	[{'connected_gene': 'WDR38', 'score': 550.77}, {'connected_gene': 'ARPC5L', 'score': 14.47}, {'connected_gene': 'OLFML2A', 'score': 4.22}, {'connected_gene': 'PIR55692', 'score': 0.26}]
chr9	GH09I124766	124766801	124767000	0.56	[{'connected_gene': 'WDR38', 'score': 11.63}, {'connected_gene': 'ARPC5L', 'score': 11.62}, {'connected_gene': 'RPL35', 'score': 11.62}, {'connected_gene': 'NR6A1', 'score': 0.77}, {'connected_gene': 'ENSG00000236643', 'score': 0.77}, {'connected_gene': 'GC09P124694', 'score': 0.19}]
chr9	GH09I124795	124795022	124798471	1.24	[{'connected_gene': 'WDR38', 'score': 12.09}, {'connected_gene': 'ARPC5L', 'score': 12.07}, {'connected_gene': 'RPL35', 'score': 12.07}, {'connected_gene': 'GAPVD1', 'score': 10.18}, {'connected_gene': 'RNU6-1020P', 'score': 10.16}, {'connected_gene': 'MIR181A2HG', 'score': 8.44}, {'connected_gene': 'PIR55692', 'score': 0.39}, {'connected_gene': 'OLFML2A', 'score': 0.37}]
chr9	GH09I124756	124756798	124762156	1.02	[{'connected_gene': 'WDR38', 'score': 11.79}, {'connected_gene': 'ARPC5L', 'score': 11.78}, {'connected_gene': 'RPL35', 'score': 11.78}, {'connected_gene': 'MIR181A2HG', 'score': 7.2}, {'connected_gene': 'NR6A1', 'score': 0.39}, {'connected_gene': 'ENSG00000236643', 'score': 0.39}, {'connected_gene': 'GC09P124694', 'score': 0.2}]
chr9	GH09I124774	124774324	124775000	1.05	[{'connected_gene': 'WDR38', 'score': 13.58}, {'connected_gene': 'ARPC5L', 'score': 13.57}, {'connected_gene': 'RPL35', 'score': 13.57}, {'connected_gene': 'MIR181A2HG', 'score': 8.32}, {'connected_gene': 'OLFML2A', 'score': 0.77}, {'connected_gene': 'NR6A1', 'score': 0.77}]
chr9	GH09I124881	124880413	124880823	0.51	[{'connected_gene': 'WDR38', 'score': 12.15}, {'connected_gene': 'OLFML2A', 'score': 11.68}, {'connected_gene': 'GOLGA1', 'score': 10.38}, {'connected_gene': 'RNU4-82P', 'score': 0.44}, {'connected_gene': 'GC09M124888', 'score': 0.44}, {'connected_gene': 'ARPC5L', 'score': 0.37}]
chr9	GH09I124860	124856022	124856251	0.72	[{'connected_gene': 'WDR38', 'score': 0.77}, {'connected_gene': 'RPL35', 'score': 0.44}]
chr9	GH09I124856	124856702	124856971	0.79	[{'connected_gene': 'WDR38', 'score': 0.77}, {'connected_gene': 'RPL35', 'score': 0.44}]
chr9	GH09I124933	124933661	124935590	0.43	[{'connected_gene': 'SCAI', 'score': 11.12}, {'connected_gene': 'ARPC5L', 'score': 10.91}, {'connected_gene': 'RPL35', 'score': 10.91}, {'connected_gene': 'WDR38', 'score': 10.9}, {'connected_gene': 'PPP6C', 'score': 10.51}, {'connected_gene': 'GC09P124941', 'score': 0.44}, {'connected_gene': 'GOLGA1', 'score': 0.39}, {'connected_gene': 'GC09M124888', 'score': 0.25}, {'connected_gene': 'RNU4-82P', 'score': 0.25}]
chr9	GH09I124973	124973742	124974185	0.6	[{'connected_gene': 'SCAI', 'score': 11.72}, {'connected_gene': 'ARPC5L', 'score': 10.74}, {'connected_gene': 'RPL35', 'score': 10.74}, {'connected_gene': 'WDR38', 'score': 10.73}, {'connected_gene': 'PPP6C', 'score': 10.34}, {'connected_gene': 'FXNP2', 'score': 0.44}, {'connected_gene': 'GC09M125042', 'score': 0.19}]
chr9	GH09I124772	124772582	124772631	0.38	[{'connected_gene': 'NR6A1', 'score': 550.77}, {'connected_gene': 'WDR38', 'score': 13.58}, {'connected_gene': 'ARPC5L', 'score': 13.57}, {'connected_gene': 'RPL35', 'score': 13.57}, {'connected_gene': 'OLFML2A', 'score': 0.77}, {'connected_gene': 'ENSG00000236643', 'score': 0.77}]
chr9	GH09I124747	124747194	124747529	0.39	[{'connected_gene': 'NR6A1', 'score': 12.31}, {'connected_gene': 'ENSG00000236643', 'score': 12.31}, {'connected_gene': 'WDR38', 'score': 10.99}, {'connected_gene': 'ARPC5L', 'score': 10.99}, {'connected_gene': 'RPL35', 'score': 10.99}, {'connected_gene': 'GC09P124694', 'score': 0.23}]
chr9	GH09I124742	124742926	124744824	0.8	[{'connected_gene': 'NR6A1', 'score': 12.28}, {'connected_gene': 'ENSG00000236643', 'score': 12.28}, {'connected_gene': 'WDR38', 'score': 10.99}, {'connected_gene': 'ARPC5L', 'score': 10.98}, {'connected_gene': 'RPL35', 'score': 10.98}, {'connected_gene': 'GC09P124694', 'score': 0.23}]
chr9	GH09I124711	124711800	124712400	1.11	[{'connected_gene': 'NR6A1', 'score': 11.59}, {'connected_gene': 'ENSG00000236643', 'score': 11.59}, {'connected_gene': 'RPL35', 'score': 11.04}, {'connected_gene': 'WDR38', 'score': 11.04}, {'connected_gene': 'ARPC5L', 'score': 11.03}, {'connected_gene': 'MIR181A2HG', 'score': 6.63}, {'connected_gene': 'GC09P124694', 'score': 0.37}]
chr9	GH09I125374	125374401	125375183	0.96	[{'connected_gene': 'GAPVD1', 'score': 25.57}, {'connected_gene': 'RNU6-1020P', 'score': 11.26}, {'connected_gene': 'RPSAP76', 'score': 10.79}, {'connected_gene': 'RABEPK', 'score': 10.79}, {'connected_gene': 'ARPC5L', 'score': 10.41}, {'connected_gene': 'RPL35', 'score': 10.41}, {'connected_gene': 'WDR38', 'score': 10.41}, {'connected_gene': 'PPP6C', 'score': 9.86}, {'connected_gene': 'ENSG00000227845', 'score': 0.77}, {'connected_gene': 'GC09P125379', 'score': 0.77}]
chr9	GH09I124799	124799642	124802984	1.49	[{'connected_gene': 'OLFML2A', 'score': 561.52}, {'connected_gene': 'WDR38', 'score': 12.1}, {'connected_gene': 'ARPC5L', 'score': 12.08}, {'connected_gene': 'RPL35', 'score': 12.08}, {'connected_gene': 'GAPVD1', 'score': 10.18}, {'connected_gene': 'RNU6-1020P', 'score': 10.16}, {'connected_gene': 'MIR181A2HG', 'score': 7.47}, {'connected_gene': 'PIR55692', 'score': 0.44}]
chr9	GH09I124819	124819922	124822095	1	[{'connected_gene': 'OLFML2A', 'score': 5.27}, {'connected_gene': 'PIR55692', 'score': 0.39}, {'connected_gene': 'WDR38', 'score': 0.29}]
chr9	GH09I124859	124856542	124856691	0.8	[{'connected_gene': 'PRPS1P2', 'score': 12.16}, {'connected_gene': 'WDR38', 'score': 0.77}, {'connected_gene': 'RPL35', 'score': 0.44}]
chr9	GH09I124861	124856382	124856531	0.66	[{'connected_gene': 'PRPS1P2', 'score': 12.16}, {'connected_gene': 'WDR38', 'score': 0.77}, {'connected_gene': 'RPL35', 'score': 0.44}]
chr9	GH09I124808	124808482	124814575	1.29	[{'connected_gene': 'PIR55692', 'score': 550.77}, {'connected_gene': 'GOLGA1', 'score': 17.45}, {'connected_gene': 'OLFML2A', 'score': 5.47}, {'connected_gene': 'WDR38', 'score': 0.26}]
chr9	GH09I124768	124768904	124772401	2.11	[{'connected_gene': 'ENSG00000236643', 'score': 550.77}, {'connected_gene': 'NR6A1', 'score': 550.77}, {'connected_gene': 'PRPS1P2', 'score': 39.61}, {'connected_gene': 'GAPVD1', 'score': 21.07}, {'connected_gene': 'GOLGA1', 'score': 20.18}, {'connected_gene': 'WDR38', 'score': 13.58}, {'connected_gene': 'ARPC5L', 'score': 13.56}, {'connected_gene': 'RPL35', 'score': 13.56}, {'connected_gene': 'MIR181A2HG', 'score': 7.75}]