PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000540941	[[37582642, 37585247], [37586034, 37586163], [37588809, 37588929], [37592249, 37592466]]	[[37592250, 37592466]]
ENST00000377773	[[37588409, 37588929], [37592306, 37592594]]	[[37588894, 37588929], [37592306, 37592529]]
ENST00000321301	[[37588409, 37588929], [37592408, 37592639]]	[[37588894, 37588929], [37592408, 37592529]]
ENST00000401811	[[37588454, 37588929], [37592287, 37592601]]	[[37588874, 37588929], [37592287, 37592529]]
ENST00000544379	[[37588638, 37588929], [37592249, 37592593]]	[[37592250, 37592529]]
NM_001134484	[[37588409, 37588929], [37592249, 37592636]]	[[37592250, 37592529]]
NM_001134485	[[37588409, 37588929], [37592306, 37592636]]	[[37588894, 37588929], [37592306, 37592529]]
NM_001001790	[[37588409, 37588929], [37592408, 37592636]]	[[37588894, 37588929], [37592408, 37592529]]

Promoter

Chrom	Start	End	Description
chr9	37592532	37592558	CAGE_peak_2_at_TOMM5_5end
chr9	37592561	37592616	CAGE_peak_1_at_TOMM5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I037408	37408285	37410827	1.34	[{'connected_gene': 'ZBTB5', 'score': 10.43}, {'connected_gene': 'GRHPR', 'score': 7.81}, {'connected_gene': 'PAX5', 'score': 5.14}, {'connected_gene': 'ZCCHC7', 'score': 2.21}, {'connected_gene': 'TOMM5', 'score': 1.61}, {'connected_gene': 'POLR1E', 'score': 1.46}, {'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'LOC105376035', 'score': 0.26}]
chr9	GH09I037511	37511124	37511273	0.49	[{'connected_gene': 'ZBTB5', 'score': 11.0}, {'connected_gene': 'FBXO10', 'score': 10.52}, {'connected_gene': 'TOMM5', 'score': 10.49}, {'connected_gene': 'ENSG00000256966', 'score': 10.49}, {'connected_gene': 'FRMPD1', 'score': 9.79}, {'connected_gene': 'ENSG00000234160', 'score': 0.77}, {'connected_gene': 'PIR43909', 'score': 0.77}]
chr9	GH09I037485	37485062	37488539	2.21	[{'connected_gene': 'POLR1E', 'score': 580.95}, {'connected_gene': 'RPL21P83', 'score': 44.65}, {'connected_gene': 'ZCCHC7', 'score': 27.91}, {'connected_gene': 'EXOSC3', 'score': 23.7}, {'connected_gene': 'ZBTB5', 'score': 16.41}, {'connected_gene': 'FBXO10', 'score': 16.31}, {'connected_gene': 'ENSG00000234160', 'score': 12.54}, {'connected_gene': 'DCAF10', 'score': 11.04}, {'connected_gene': 'TOMM5', 'score': 10.79}, {'connected_gene': 'ENSG00000256966', 'score': 10.79}, {'connected_gene': 'TMX2P1', 'score': 9.83}, {'connected_gene': 'FRMPD1', 'score': 9.74}, {'connected_gene': 'GRHPR', 'score': 8.88}, {'connected_gene': 'GC09M037494', 'score': 0.77}]
chr9	GH09I037590	37590671	37593213	2.09	[{'connected_gene': 'TOMM5', 'score': 557.21}, {'connected_gene': 'ENSG00000256966', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 27.9}, {'connected_gene': 'EXOSC3', 'score': 23.72}, {'connected_gene': 'DCAF10', 'score': 11.06}, {'connected_gene': 'TMX2P1', 'score': 9.84}, {'connected_gene': 'POLR1E', 'score': 9.09}, {'connected_gene': 'GC09P037586', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037594	37593324	37593378	0.46	[{'connected_gene': 'TOMM5', 'score': 550.77}, {'connected_gene': 'ENSG00000256966', 'score': 550.77}, {'connected_gene': 'POLR1E', 'score': 9.75}, {'connected_gene': 'FRMPD1', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037667	37667728	37668712	0.51	[{'connected_gene': 'TOMM5', 'score': 10.74}, {'connected_gene': 'ENSG00000256966', 'score': 10.74}, {'connected_gene': 'FBXO10', 'score': 10.72}, {'connected_gene': 'FRMPD1', 'score': 6.88}, {'connected_gene': 'GC09M037661', 'score': 0.44}, {'connected_gene': 'RN7SKP171', 'score': 0.44}, {'connected_gene': 'TRMT10B', 'score': 0.18}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037622	37622644	37622712	0.38	[{'connected_gene': 'TOMM5', 'score': 12.64}, {'connected_gene': 'ENSG00000256966', 'score': 12.64}, {'connected_gene': 'FBXO10', 'score': 12.59}, {'connected_gene': 'GC09M037636', 'score': 0.39}, {'connected_gene': 'FRMPD1', 'score': 0.37}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037621	37621384	37621533	0.43	[{'connected_gene': 'TOMM5', 'score': 12.66}, {'connected_gene': 'ENSG00000256966', 'score': 12.66}, {'connected_gene': 'FBXO10', 'score': 12.59}, {'connected_gene': 'GC09M037636', 'score': 0.37}, {'connected_gene': 'FRMPD1', 'score': 0.37}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037593	37593949	37595213	1	[{'connected_gene': 'TOMM5', 'score': 557.89}, {'connected_gene': 'FRMPD1', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037550	37550443	37551699	0.38	[{'connected_gene': 'FBXO10', 'score': 20.13}, {'connected_gene': 'ENSG00000234160', 'score': 12.14}, {'connected_gene': 'TOMM5', 'score': 11.43}, {'connected_gene': 'ENSG00000256966', 'score': 11.43}, {'connected_gene': 'POLR1E', 'score': 11.08}, {'connected_gene': 'FRMPD1', 'score': 10.09}, {'connected_gene': 'PIR31436', 'score': 0.39}, {'connected_gene': 'GC09M037564', 'score': 0.37}]
chr9	GH09I037582	37582664	37582813	0.6	[{'connected_gene': 'FRMPD1', 'score': 10.86}, {'connected_gene': 'ZBTB5', 'score': 10.31}, {'connected_gene': 'GC09P037586', 'score': 0.77}, {'connected_gene': 'TOMM5', 'score': 0.44}, {'connected_gene': 'FBXO10', 'score': 0.44}, {'connected_gene': 'ENSG00000256966', 'score': 0.44}]
chr9	GH09I037602	37602464	37603433	0.74	[{'connected_gene': 'FRMPD1', 'score': 550.77}, {'connected_gene': 'POLR1E', 'score': 15.24}, {'connected_gene': 'TOMM5', 'score': 0.39}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037679	37679075	37679134	1.03	[{'connected_gene': 'FRMPD1', 'score': 561.2}, {'connected_gene': 'TOMM5', 'score': 11.26}, {'connected_gene': 'ENSG00000256966', 'score': 11.26}, {'connected_gene': 'FBXO10', 'score': 11.24}, {'connected_gene': 'GC09M037661', 'score': 0.37}, {'connected_gene': 'RN7SKP171', 'score': 0.37}, {'connected_gene': 'TRMT10B', 'score': 0.19}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037675	37675502	37678159	0.38	[{'connected_gene': 'FRMPD1', 'score': 19.52}, {'connected_gene': 'TOMM5', 'score': 11.55}, {'connected_gene': 'ENSG00000256966', 'score': 11.55}, {'connected_gene': 'FBXO10', 'score': 11.52}, {'connected_gene': 'RPL21P83', 'score': 5.95}, {'connected_gene': 'GC09M037661', 'score': 0.39}, {'connected_gene': 'RN7SKP171', 'score': 0.39}, {'connected_gene': 'TRMT10B', 'score': 0.18}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]