PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000460265	[[126112314, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126150861, 126150939], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172706]]	None
ENST00000261366	[[126112839, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172712]]	[[126113200, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126171956]]
ENST00000504788	[[126112844, 126112936], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172263]]	None
ENST00000492190	[[126112852, 126112944], [126113052, 126113559], [126140467, 126140606]]	None
ENST00000472034	[[126112852, 126112944], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154671]]	None
ENST00000395354	[[126112880, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154926]]	[[126113200, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154838]]
ENST00000463908	[[126113070, 126113098], [126113389, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126145947]]	None
ENST00000494185	[[126147404, 126147590], [126154613, 126154834], [126156601, 126156773]]	None
ENST00000512460	[[126154619, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161801]]	None
NM_005573	[[126112314, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172712]]	[[126113200, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126171956]]
NR_134488	[[126112314, 126113559], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126150861, 126150939], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172712]]	None
NM_001198557	[[126112844, 126112936], [126140467, 126140624], [126141262, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126172712]]	[[126141376, 126141388], [126145871, 126146042], [126147464, 126147590], [126154613, 126154834], [126156601, 126156827], [126158472, 126158577], [126161679, 126161799], [126168385, 126168493], [126171914, 126171956]]

Promoter

Chrom	Start	End	Description
chr5	126112794	126112928	CAGE_peak_1_at_LMNB1_5end
chr5	126112960	126112968	CAGE_peak_15_at_LMNB1_5end
chr5	126112987	126113012	CAGE_peak_4_at_LMNB1_5end
chr5	126113018	126113036	CAGE_peak_5_at_LMNB1_5end
chr5	126113041	126113051	CAGE_peak_13_at_LMNB1_5end
chr5	126113053	126113064	CAGE_peak_7_at_LMNB1_5end
chr5	126113110	126113127	CAGE_peak_9_at_LMNB1_5end
chr5	126147409	126147430	CAGE_peak_3_at_LMNB1_5end
chr5	126147449	126147493	CAGE_peak_2_at_LMNB1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I126747	126747389	126749281	1.4	[{'connected_gene': 'PHAX', 'score': 21.48}, {'connected_gene': 'LMNB1-DT', 'score': 12.47}, {'connected_gene': 'LMNB1', 'score': 12.47}, {'connected_gene': 'ALDH7A1', 'score': 4.98}, {'connected_gene': 'GC05P126739', 'score': 0.44}, {'connected_gene': 'RNU6-752P', 'score': 0.44}]
chr5	GH05I126757	126757999	126759545	1.47	[{'connected_gene': 'LMNB1', 'score': 2.64}, {'connected_gene': 'RNU6-752P', 'score': 0.77}, {'connected_gene': 'LMNB1-DT', 'score': 0.37}]
chr5	GH05I126699	126699601	126700200	0.49	[{'connected_gene': 'LMNB1', 'score': 11.77}, {'connected_gene': 'LMNB1-DT', 'score': 11.77}, {'connected_gene': 'RNU6-752P', 'score': 11.59}, {'connected_gene': 'ALDH7A1', 'score': 10.69}, {'connected_gene': 'ENSG00000250602', 'score': 9.39}, {'connected_gene': 'GRAMD2B', 'score': 9.36}, {'connected_gene': 'MARCH3', 'score': 9.08}, {'connected_gene': 'LOC105379162', 'score': 0.34}, {'connected_gene': 'HSPE1P10', 'score': 0.28}]
chr5	GH05I126679	126679543	126681483	1.32	[{'connected_gene': 'LMNB1', 'score': 16.27}, {'connected_gene': 'LMNB1-DT', 'score': 12.52}, {'connected_gene': 'RNU6-752P', 'score': 11.22}, {'connected_gene': 'ALDH7A1', 'score': 4.97}, {'connected_gene': 'LOC105379162', 'score': 0.44}, {'connected_gene': 'HSPE1P10', 'score': 0.22}]
chr5	GH05I126759	126759808	126763556	1.51	[{'connected_gene': 'PRRC1', 'score': 21.04}, {'connected_gene': 'CCDC192', 'score': 12.1}, {'connected_gene': 'PHAX', 'score': 10.57}, {'connected_gene': 'ALDH7A1', 'score': 6.34}, {'connected_gene': 'RNU6-752P', 'score': 0.44}, {'connected_gene': 'LMNB1', 'score': 0.39}, {'connected_gene': 'LMNB1-DT', 'score': 0.37}]
chr5	GH05I126821	126821272	126828653	0.31	[{'connected_gene': 'MARCH3', 'score': 15.32}, {'connected_gene': 'LMNB1-DT', 'score': 11.34}, {'connected_gene': 'LMNB1', 'score': 11.34}, {'connected_gene': 'RNU6-752P', 'score': 10.55}, {'connected_gene': 'ALDH7A1', 'score': 5.07}, {'connected_gene': 'GC05M126868', 'score': 0.26}]
chr5	GH05I126828	126828953	126832198	0.49	[{'connected_gene': 'MARCH3', 'score': 10.71}, {'connected_gene': 'GC05M126868', 'score': 0.28}, {'connected_gene': 'LMNB1-DT', 'score': 0.23}, {'connected_gene': 'LMNB1', 'score': 0.23}]
chr5	GH05I126832	126832913	126834463	0.2	[{'connected_gene': 'MARCH3', 'score': 11.91}, {'connected_gene': 'GC05M126868', 'score': 0.28}, {'connected_gene': 'LMNB1-DT', 'score': 0.22}, {'connected_gene': 'LMNB1', 'score': 0.22}]
chr5	GH05I126787	126787646	126792088	0.68	[{'connected_gene': 'RNU6-752P', 'score': 11.62}, {'connected_gene': 'PHAX', 'score': 10.56}, {'connected_gene': 'MARCH3', 'score': 10.19}, {'connected_gene': 'CCDC192', 'score': 10.09}, {'connected_gene': 'ALDH7A1', 'score': 5.16}, {'connected_gene': 'LMNB1', 'score': 0.39}, {'connected_gene': 'LMNB1-DT', 'score': 0.39}, {'connected_gene': 'GC05M126868', 'score': 0.18}]
chr5	GH05I126786	126786033	126787497	0.43	[{'connected_gene': 'RNU6-752P', 'score': 11.62}, {'connected_gene': 'ALDH7A1', 'score': 5.17}, {'connected_gene': 'LMNB1-DT', 'score': 0.44}, {'connected_gene': 'LMNB1', 'score': 0.39}, {'connected_gene': 'GC05M126868', 'score': 0.18}]
chr5	GH05I126794	126794201	126794800	0.4	[{'connected_gene': 'RNU6-752P', 'score': 11.26}, {'connected_gene': 'MARCH3', 'score': 10.19}, {'connected_gene': 'LMNB1-DT', 'score': 0.37}, {'connected_gene': 'LMNB1', 'score': 0.37}, {'connected_gene': 'GC05M126868', 'score': 0.19}]
chr5	GH05I126793	126793601	126793800	0.4	[{'connected_gene': 'RNU6-752P', 'score': 11.26}, {'connected_gene': 'MARCH3', 'score': 10.19}, {'connected_gene': 'LMNB1-DT', 'score': 0.37}, {'connected_gene': 'LMNB1', 'score': 0.37}, {'connected_gene': 'GC05M126868', 'score': 0.18}]
chr5	GH05I126717	126717588	126720278	0.2	[{'connected_gene': 'RNU6-752P', 'score': 11.92}, {'connected_gene': 'LMNB1-DT', 'score': 11.66}, {'connected_gene': 'LMNB1', 'score': 11.66}, {'connected_gene': 'ALDH7A1', 'score': 6.93}, {'connected_gene': 'HSPE1P10', 'score': 0.37}, {'connected_gene': 'LOC105379162', 'score': 0.26}]
chr5	GH05I126713	126713000	126713201	0.74	[{'connected_gene': 'RNU6-752P', 'score': 11.91}, {'connected_gene': 'LMNB1-DT', 'score': 11.54}, {'connected_gene': 'LMNB1', 'score': 11.54}, {'connected_gene': 'ALDH7A1', 'score': 6.98}, {'connected_gene': 'HSPE1P10', 'score': 0.34}, {'connected_gene': 'LOC105379162', 'score': 0.28}]
chr5	GH05I126753	126753180	126753691	0.76	[{'connected_gene': 'RNU6-752P', 'score': 550.77}, {'connected_gene': 'LMNB1-DT', 'score': 12.5}, {'connected_gene': 'LMNB1', 'score': 12.5}, {'connected_gene': 'GC05P126739', 'score': 0.39}]
chr5	GH05I126674	126674048	126674481	0.38	[{'connected_gene': 'LOC105379162', 'score': 550.77}, {'connected_gene': 'LMNB1-DT', 'score': 12.41}, {'connected_gene': 'LMNB1', 'score': 12.41}, {'connected_gene': 'RNU6-752P', 'score': 11.28}, {'connected_gene': 'BOLA3P3', 'score': 0.39}]
chr5	GH05I126675	126675709	126676870	1.12	[{'connected_gene': 'LOC105379162', 'score': 550.77}, {'connected_gene': 'LMNB1-DT', 'score': 12.51}, {'connected_gene': 'LMNB1', 'score': 12.51}, {'connected_gene': 'RNU6-752P', 'score': 11.21}, {'connected_gene': 'ALDH7A1', 'score': 5.48}, {'connected_gene': 'HSPE1P10', 'score': 0.21}]
chr5	GH05I126648	126648387	126649805	0.89	[{'connected_gene': 'LMNB1-DT', 'score': 10.59}, {'connected_gene': 'LMNB1', 'score': 10.59}, {'connected_gene': 'ALDH7A1', 'score': 8.09}, {'connected_gene': 'GC05M126665', 'score': 0.39}, {'connected_gene': 'TEX43', 'score': 0.37}]
chr5	GH05I126808	126808002	126812731	1.05	[{'connected_gene': 'LMNB1-DT', 'score': 11.77}, {'connected_gene': 'LMNB1', 'score': 11.77}, {'connected_gene': 'MARCH3', 'score': 10.59}, {'connected_gene': 'RNU6-752P', 'score': 10.57}, {'connected_gene': 'ALDH7A1', 'score': 5.06}, {'connected_gene': 'GC05M126868', 'score': 0.22}]
chr5	GH05I126814	126814402	126815399	0.72	[{'connected_gene': 'LMNB1-DT', 'score': 11.37}, {'connected_gene': 'LMNB1', 'score': 11.37}, {'connected_gene': 'MARCH3', 'score': 10.6}, {'connected_gene': 'RNU6-752P', 'score': 10.56}, {'connected_gene': 'GC05M126868', 'score': 0.23}]
chr5	GH05I126813	126813401	126814253	0.66	[{'connected_gene': 'LMNB1-DT', 'score': 11.37}, {'connected_gene': 'LMNB1', 'score': 11.37}, {'connected_gene': 'MARCH3', 'score': 10.6}, {'connected_gene': 'RNU6-752P', 'score': 10.56}, {'connected_gene': 'GC05M126868', 'score': 0.22}]
chr5	GH05I126801	126801801	126802218	0.92	[{'connected_gene': 'LMNB1-DT', 'score': 12.63}, {'connected_gene': 'LMNB1', 'score': 12.6}, {'connected_gene': 'MARCH3', 'score': 10.12}, {'connected_gene': 'GC05M126868', 'score': 0.2}]
chr5	GH05I126775	126775413	126780571	2.32	[{'connected_gene': 'LMNB1-DT', 'score': 550.77}, {'connected_gene': 'LMNB1', 'score': 550.77}, {'connected_gene': 'RNU6-752P', 'score': 11.6}, {'connected_gene': 'ALDH7A1', 'score': 5.69}, {'connected_gene': 'GC05M126868', 'score': 0.16}]
chr5	GH05I126684	126684454	126685510	0.52	[{'connected_gene': 'LMNB1-DT', 'score': 12.32}, {'connected_gene': 'LMNB1', 'score': 12.32}, {'connected_gene': 'RNU6-752P', 'score': 11.39}, {'connected_gene': 'LOC105379162', 'score': 0.39}, {'connected_gene': 'HSPE1P10', 'score': 0.23}]
chr5	GH05I126746	126746429	126746578	0.71	[{'connected_gene': 'LMNB1-DT', 'score': 12.45}, {'connected_gene': 'LMNB1', 'score': 12.45}, {'connected_gene': 'GC05P126739', 'score': 0.44}, {'connected_gene': 'RNU6-752P', 'score': 0.44}]
chr5	GH05I126752	126752154	126752323	0.6	[{'connected_gene': 'LMNB1-DT', 'score': 12.5}, {'connected_gene': 'LMNB1', 'score': 12.5}, {'connected_gene': 'RNU6-752P', 'score': 0.77}, {'connected_gene': 'GC05P126739', 'score': 0.39}]