PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368100	[[159824105, 159824816], [159825672, 159825871], [159826313, 159826433], [159827534, 159827756], [159827879, 159828081], [159828523, 159828702], [159832262, 159832447]]	[[159824542, 159824816], [159825672, 159825871], [159826313, 159826433], [159827534, 159827756], [159827879, 159828081], [159828523, 159828702], [159832262, 159832311]]
NM_001013661	[[159824105, 159824816], [159825672, 159825871], [159826313, 159826433], [159827534, 159827756], [159827879, 159828081], [159828523, 159828702], [159832262, 159832447]]	[[159824542, 159824816], [159825672, 159825871], [159826313, 159826433], [159827534, 159827756], [159827879, 159828081], [159828523, 159828702], [159832262, 159832311]]

Promoter

Chrom	Start	End	Description
chr1	159832438	159832449	CAGE_peak_1_at_VSIG8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I160108	160108791	160110022	1.24	[{'connected_gene': 'IGSF8', 'score': 6.2}, {'connected_gene': 'VSIG8', 'score': 4.31}, {'connected_gene': 'ATP1A2', 'score': 0.44}]
chr1	GH01I159908	159908211	159926755	2.87	[{'connected_gene': 'TAGLN2', 'score': 559.83}, {'connected_gene': 'GC01M159919', 'score': 550.77}, {'connected_gene': 'GC01M159886', 'score': 550.77}, {'connected_gene': 'LOC100287049', 'score': 34.57}, {'connected_gene': 'NCSTN', 'score': 32.37}, {'connected_gene': 'SLAMF8', 'score': 31.57}, {'connected_gene': 'RAD1P2', 'score': 30.68}, {'connected_gene': 'ENSG00000272668', 'score': 20.86}, {'connected_gene': 'SNHG28', 'score': 17.8}, {'connected_gene': 'VSIG8', 'score': 13.81}, {'connected_gene': 'DCAF8', 'score': 11.97}, {'connected_gene': 'COPA', 'score': 10.55}, {'connected_gene': 'ENSG00000256029', 'score': 9.99}, {'connected_gene': 'FCRL6', 'score': 7.6}, {'connected_gene': 'ENSG00000279430', 'score': 0.44}]
chr1	GH01I159936	159936201	159946713	2.66	[{'connected_gene': 'IGSF9', 'score': 559.99}, {'connected_gene': 'ATP1A4', 'score': 51.6}, {'connected_gene': 'KCNJ10', 'score': 12.41}, {'connected_gene': 'NHLH1', 'score': 6.2}, {'connected_gene': 'LINC01133', 'score': 6.08}, {'connected_gene': 'VSIG8', 'score': 5.95}, {'connected_gene': 'CFAP45', 'score': 4.42}, {'connected_gene': 'VANGL2', 'score': 2.07}, {'connected_gene': 'TAGLN2', 'score': 0.37}]
chr1	GH01I159907	159907071	159907220	0.2	[{'connected_gene': 'VSIG8', 'score': 18.15}, {'connected_gene': 'SNHG28', 'score': 11.03}, {'connected_gene': 'IGSF9', 'score': 11.03}, {'connected_gene': 'ENSG00000212161', 'score': 11.02}, {'connected_gene': 'FCRL6', 'score': 10.5}, {'connected_gene': 'DUSP23', 'score': 10.41}, {'connected_gene': 'PIGM', 'score': 9.49}, {'connected_gene': 'ENSG00000279430', 'score': 0.77}, {'connected_gene': 'GC01P159904', 'score': 0.77}, {'connected_gene': 'PIR60584', 'score': 0.77}, {'connected_gene': 'GC01M159886', 'score': 0.39}]
chr1	GH01I159879	159879981	159880782	1.18	[{'connected_gene': 'VSIG8', 'score': 6.81}, {'connected_gene': 'ENSG00000256029', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.37}, {'connected_gene': 'MIR4259', 'score': 0.37}]
chr1	GH01I159862	159862647	159862706	0.5	[{'connected_gene': 'VSIG8', 'score': 550.77}, {'connected_gene': 'ENSG00000272668', 'score': 0.77}, {'connected_gene': 'ENSG00000256029', 'score': 0.39}]
chr1	GH01I159881	159881288	159882982	1.61	[{'connected_gene': 'RPSAP18', 'score': 36.6}, {'connected_gene': 'ENSG00000272668', 'score': 32.19}, {'connected_gene': 'SNHG28', 'score': 31.7}, {'connected_gene': 'LOC100287049', 'score': 22.64}, {'connected_gene': 'SLAMF8', 'score': 12.57}, {'connected_gene': 'PIGM', 'score': 12.13}, {'connected_gene': 'DCAF8', 'score': 11.34}, {'connected_gene': 'CADM3', 'score': 11.13}, {'connected_gene': 'CADM3-AS1', 'score': 10.32}, {'connected_gene': 'COPA', 'score': 9.98}, {'connected_gene': 'VSIG8', 'score': 6.77}, {'connected_gene': 'SLAMF9', 'score': 5.45}, {'connected_gene': 'TAGLN2', 'score': 2.04}, {'connected_gene': 'ENSG00000256029', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.37}, {'connected_gene': 'MIR4259', 'score': 0.37}]
chr1	GH01I159823	159823351	159823502	0.39	[{'connected_gene': 'FCRL6', 'score': 10.97}, {'connected_gene': 'ENSG00000212161', 'score': 10.66}, {'connected_gene': 'SNHG28', 'score': 10.56}, {'connected_gene': 'VSIG8', 'score': 10.55}, {'connected_gene': 'SLAMF8', 'score': 2.18}, {'connected_gene': 'LOC105371464', 'score': 0.37}]
chr1	GH01I159856	159856334	159857152	0.46	[{'connected_gene': 'SNHG28', 'score': 550.77}, {'connected_gene': 'ENSG00000272668', 'score': 76.95}, {'connected_gene': 'VSIG8', 'score': 0.44}]
chr1	GH01I159853	159853022	159855969	1.55	[{'connected_gene': 'SNHG28', 'score': 550.77}, {'connected_gene': 'ENSG00000272668', 'score': 44.25}, {'connected_gene': 'ENSG00000212161', 'score': 0.77}, {'connected_gene': 'GC01M159852', 'score': 0.77}, {'connected_gene': 'VSIG8', 'score': 0.44}]
chr1	GH01I159898	159898091	159899318	0.78	[{'connected_gene': 'CFAP45', 'score': 550.77}, {'connected_gene': 'MIR4259', 'score': 550.77}, {'connected_gene': 'ENSG00000272668', 'score': 6.71}, {'connected_gene': 'SNHG28', 'score': 5.02}, {'connected_gene': 'VSIG8', 'score': 4.72}, {'connected_gene': 'GC01M159886', 'score': 0.37}, {'connected_gene': 'ENSG00000256029', 'score': 0.31}]
chr1	GH01I159803	159803878	159805343	0.46	[{'connected_gene': 'LOC105371464', 'score': 550.77}, {'connected_gene': 'SLAMF8', 'score': 11.92}, {'connected_gene': 'ENSG00000212161', 'score': 10.86}, {'connected_gene': 'SNHG28', 'score': 10.73}, {'connected_gene': 'VSIG8', 'score': 10.72}, {'connected_gene': 'DUSP23', 'score': 10.7}, {'connected_gene': 'IGSF9', 'score': 10.23}, {'connected_gene': 'FCRL6', 'score': 0.77}]
chr1	GH01I159888	159888967	159891999	1.66	[{'connected_gene': 'ENSG00000272668', 'score': 34.46}, {'connected_gene': 'SLAMF8', 'score': 17.04}, {'connected_gene': 'SNHG28', 'score': 16.35}, {'connected_gene': 'FCRL6', 'score': 12.13}, {'connected_gene': 'VSIG8', 'score': 11.62}, {'connected_gene': 'ENSG00000212161', 'score': 11.59}, {'connected_gene': 'IGSF9', 'score': 10.93}, {'connected_gene': 'DUSP23', 'score': 10.84}, {'connected_gene': 'PIGM', 'score': 9.57}, {'connected_gene': 'SLAMF9', 'score': 5.85}, {'connected_gene': 'TAGLN2', 'score': 2.78}, {'connected_gene': 'COPA', 'score': 1.22}, {'connected_gene': 'MIR4259', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.44}, {'connected_gene': 'ENSG00000256029', 'score': 0.37}, {'connected_gene': 'GC01M159886', 'score': 0.31}]
chr1	GH01I159817	159817241	159818095	0.85	[{'connected_gene': 'ENSG00000212161', 'score': 11.62}, {'connected_gene': 'SNHG28', 'score': 11.19}, {'connected_gene': 'VSIG8', 'score': 11.17}, {'connected_gene': 'SLAMF8', 'score': 0.44}, {'connected_gene': 'LOC105371464', 'score': 0.39}]
chr1	GH01I159859	159859638	159859993	0.42	[{'connected_gene': 'ENSG00000272668', 'score': 10.37}, {'connected_gene': 'OR10J5', 'score': 1.62}, {'connected_gene': 'KCNJ9', 'score': 1.32}, {'connected_gene': 'VSIG8', 'score': 0.77}, {'connected_gene': 'SNHG28', 'score': 0.77}, {'connected_gene': 'ENSG00000256029', 'score': 0.39}]