PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000495223	[[139654085, 139654166], [139658195, 139658235], [139658321, 139658417], [139658844, 139658916]]	None
ENST00000316144	[[139654085, 139654235], [139656238, 139656305], [139656639, 139656741], [139657808, 139657919], [139658164, 139658235], [139658321, 139658461], [139658844, 139658965]]	[[139656270, 139656305], [139656639, 139656741], [139657808, 139657919], [139658164, 139658235], [139658321, 139658461], [139658844, 139658940]]
ENST00000482511	[[139654087, 139654235], [139656238, 139656305], [139656639, 139656741], [139657808, 139657919], [139658164, 139658235], [139658321, 139660707]]	None
NM_203347	[[139654085, 139654235], [139656238, 139656305], [139656639, 139656741], [139657808, 139657919], [139658164, 139658235], [139658321, 139658461], [139658844, 139658965]]	[[139656270, 139656305], [139656639, 139656741], [139657808, 139657919], [139658164, 139658235], [139658321, 139658461], [139658844, 139658940]]

Promoter

Chrom	Start	End	Description
chr9	139658908	139658936	CAGE_peak_2_at_LCN15_5end
chr9	139658967	139658975	CAGE_peak_1_at_LCN15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I136760	136760949	136761201	1.02	[{'connected_gene': 'EHMT1', 'score': 15.64}, {'connected_gene': 'LCN15', 'score': 14.81}, {'connected_gene': 'SDCCAG3', 'score': 13.09}, {'connected_gene': 'SNHG7', 'score': 12.96}, {'connected_gene': 'ANAPC2', 'score': 10.02}, {'connected_gene': 'LCN8', 'score': 0.77}]
chr9	GH09I136769	136769088	136770726	0.9	[{'connected_gene': 'LCN15', 'score': 550.77}, {'connected_gene': 'LCN8', 'score': 19.29}, {'connected_gene': 'TMEM141', 'score': 5.88}]
chr9	GH09I136764	136764508	136764567	0.92	[{'connected_gene': 'LCN15', 'score': 550.44}, {'connected_gene': 'LCN8', 'score': 0.44}]
chr9	GH09I136762	136762795	136764031	0.92	[{'connected_gene': 'LCN15', 'score': 15.28}, {'connected_gene': 'LCN8', 'score': 0.77}]
chr9	GH09I136757	136757215	136759098	1.54	[{'connected_gene': 'LCN8', 'score': 605.79}, {'connected_gene': 'EHMT1', 'score': 17.57}, {'connected_gene': 'SDCCAG3', 'score': 15.27}, {'connected_gene': 'LCN15', 'score': 12.96}, {'connected_gene': 'ANAPC2', 'score': 12.35}, {'connected_gene': 'SEC16A', 'score': 11.05}, {'connected_gene': 'SNHG7', 'score': 10.68}, {'connected_gene': 'DPH7', 'score': 10.04}, {'connected_gene': 'MAN1B1', 'score': 9.9}, {'connected_gene': 'LCN6', 'score': 0.44}]
chr9	GH09I136765	136765660	136767470	1.14	[{'connected_gene': 'LCN8', 'score': 26.51}, {'connected_gene': 'LCN15', 'score': 16.3}]
chr9	GH09I137233	137233373	137243238	2.65	[{'connected_gene': 'TUBB4B', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 90.39}, {'connected_gene': 'SDCCAG3', 'score': 59.97}, {'connected_gene': 'ANAPC2', 'score': 50.98}, {'connected_gene': 'NDOR1', 'score': 50.56}, {'connected_gene': 'DPH7', 'score': 40.53}, {'connected_gene': 'INPP5E', 'score': 40.02}, {'connected_gene': 'LOC651337', 'score': 36.84}, {'connected_gene': 'MAN1B1', 'score': 26.89}, {'connected_gene': 'SNHG7', 'score': 26.01}, {'connected_gene': 'SEC16A', 'score': 26.0}, {'connected_gene': 'EXD3', 'score': 13.5}, {'connected_gene': 'TRAF2', 'score': 10.75}, {'connected_gene': 'TMEM203', 'score': 10.34}, {'connected_gene': 'RABL6', 'score': 10.31}, {'connected_gene': 'NELFB', 'score': 8.98}, {'connected_gene': 'LCN15', 'score': 8.35}, {'connected_gene': 'ABCA2', 'score': 7.81}, {'connected_gene': 'TOR4A', 'score': 6.36}, {'connected_gene': 'UAP1L1', 'score': 6.25}, {'connected_gene': 'RNF224', 'score': 5.79}, {'connected_gene': 'CYSRT1', 'score': 5.23}, {'connected_gene': 'MRPL41', 'score': 5.19}, {'connected_gene': 'ZMYND19', 'score': 4.53}, {'connected_gene': 'PNPLA7', 'score': 3.77}, {'connected_gene': 'TPRN', 'score': 3.5}, {'connected_gene': 'LCNL1', 'score': 3.04}, {'connected_gene': 'ENTPD8', 'score': 2.25}, {'connected_gene': 'RNF208', 'score': 1.83}, {'connected_gene': 'DPP7', 'score': 1.81}, {'connected_gene': 'GRIN1', 'score': 1.71}, {'connected_gene': 'AJM1', 'score': 1.66}, {'connected_gene': 'NPDC1', 'score': 1.59}, {'connected_gene': 'NOXA1', 'score': 1.58}, {'connected_gene': 'PTGDS', 'score': 1.41}, {'connected_gene': 'ENTPD2', 'score': 1.26}, {'connected_gene': 'NSMF', 'score': 1.23}, {'connected_gene': 'SLC34A3', 'score': 0.44}]
chr9	GH09I136773	136773809	136773958	0.76	[{'connected_gene': 'CCDC183-AS1', 'score': 4.86}, {'connected_gene': 'PIR54207', 'score': 0.77}, {'connected_gene': 'LCN15', 'score': 0.77}]
chr9	GH09I136748	136748460	136749639	0.7	[{'connected_gene': 'ENSG00000204003', 'score': 550.77}, {'connected_gene': 'LCN6', 'score': 550.77}, {'connected_gene': 'LCN8', 'score': 51.89}, {'connected_gene': 'LCN15', 'score': 8.64}, {'connected_gene': 'LOC100128593', 'score': 0.77}]